Rh7CG179600

Protein terminal ear1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0009740
Physical Location & Seq
Forward (+)
15461713 .. 15462042
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG179600.1

Sequence Viewer

Length: 330 bp
ATGGGAAGGACTATCCAACTAGAAAGGAGTACATGCAGAGCCGCCGAGCACCAAGCTCTGGATCCGACGACAGTCCACGGCTTCAAAGAGTTCTCGGATCTATCCGAGAAGGCATTCAGCCAGGTGAGGTGGGTTCAGACGGAGAGGTCCTGCGACGGGATCGTGACCGTCCATTTTGACGATCTCAGGCATGTAGAGAAGGCCTTAGCGGAGAAGAGGTGGCCAAGGTGTGTTACTGTGTTTGGGTATGGGCTTACTCTTGGATTTGGGAGTGTGAATTTGGAGAGGTGGAGGAATTTTGAGGGGAGGATTGGCTCTAGATTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 RRM_2

Protein Analysis

109

Amino Acids

12.54

Weight (kDa)

8.59

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 145
AccB7I CCANNNNNTGG 1 cut(s) 58
AciI CCGC 2 cut(s) 42, 209
AclWI GGATC 4 cut(s) 56, 69, 105, 167
AcoI YGGCCR 1 cut(s) 221
AcsI RAATTY 2 cut(s) 277, 295
AfaI GTAC 1 cut(s) 31
AfiI CCNNNNNNNGG 2 cut(s) 58, 156
AgsI TTSAA 1 cut(s) 85
AjnI CCWGG 1 cut(s) 120
AluBI AGCT 1 cut(s) 56
AluI AGCT 1 cut(s) 56
Alw21I GWGCWC 1 cut(s) 51
AlwI GGATC 4 cut(s) 56, 69, 105, 167
AoxI GGCC 2 cut(s) 201, 221
ApoI RAATTY 2 cut(s) 277, 295
Asp700I GAANNNNTTC 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 136
AvaII GGWCC 1 cut(s) 147
BalI TGGCCA 1 cut(s) 223
BamHI GGATCC 1 cut(s) 61
Bbv12I GWGCWC 1 cut(s) 51
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 122
BfaI CTAG 2 cut(s) 20, 318
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 122
Bme18I GGWCC 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 147
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 122
BoxI GACNNNNGTC 1 cut(s) 71
Bpu10I CCTNAGC 1 cut(s) 205
BsaJI CCNNGG 2 cut(s) 76, 224
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 156
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 2 cut(s) 76, 224
BseLI CCNNNNNNNGG 2 cut(s) 58, 156
BseMII CTCAG 1 cut(s) 199
BshFI GGCC 2 cut(s) 203, 223
BsiHKAI GWGCWC 1 cut(s) 51
BslI CCNNNNNNNGG 2 cut(s) 58, 156
BsmI GAATGC 1 cut(s) 113
BsnI GGCC 2 cut(s) 203, 223
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 4 cut(s) 61, 97, 159, 181
BspACI CCGC 2 cut(s) 42, 209
BspANI GGCC 2 cut(s) 203, 223
BspCNI CTCAG 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 63
BspPI GGATC 4 cut(s) 56, 69, 105, 167
BssECI CCNNGG 2 cut(s) 76, 224
BssMI GATC 4 cut(s) 61, 97, 159, 181
BssT1I CCWWGG 1 cut(s) 224
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 3 cut(s) 73, 169, 238
Bst6I CTCTTC 1 cut(s) 209
BstDEI CTNAG 2 cut(s) 185, 205
BstDSI CCRYGG 1 cut(s) 76
BstKTI GATC 4 cut(s) 64, 100, 162, 184
BstMBI GATC 4 cut(s) 61, 97, 159, 181
BstNI CCWGG 1 cut(s) 122
BstNSI RCATGY 2 cut(s) 36, 194
BstPAI GACNNNNGTC 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 120
BstX2I RGATCY 2 cut(s) 61, 97
BstYI RGATCY 2 cut(s) 61, 97
BsuRI GGCC 2 cut(s) 203, 223
BtgI CCRYGG 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 147
Csp6I GTAC 1 cut(s) 30
CviAII CATG 2 cut(s) 33, 191
CviJI RGCY 8 cut(s) 41, 56, 81, 120, 203, 223, 253, 315
CviKI_1 RGCY 8 cut(s) 41, 56, 81, 120, 203, 223, 253, 315
CviQI GTAC 1 cut(s) 30
DdeI CTNAG 2 cut(s) 185, 205
DpnI GATC 4 cut(s) 63, 99, 161, 183
DpnII GATC 4 cut(s) 61, 97, 159, 181
DrdI GACNNNNNNGTC 1 cut(s) 145
DseDI GACNNNNNNGTC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 221
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
Eco130I CCWWGG 1 cut(s) 224
Eco147I AGGCCT 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 147
EcoO109I RGGNCCY 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 120
EcoT14I CCWWGG 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 224
FaeI CATG 2 cut(s) 36, 194
FaiI YATR 3 cut(s) 34, 192, 249
FatI CATG 2 cut(s) 32, 190
Fnu4HI GCNGC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 2 cut(s) 20, 318
GluI GCNGC 1 cut(s) 42
HaeIII GGCC 2 cut(s) 203, 223
Hin1II CATG 2 cut(s) 36, 194
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 4 cut(s) 66, 97, 106, 138
Hpy188III TCNNGA 3 cut(s) 59, 163, 318
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 2 cut(s) 70, 158
HpyAV CCTTC 2 cut(s) 103, 193
HpyCH4III ACNGT 3 cut(s) 73, 169, 238
HpyCH4V TGCA 1 cut(s) 36
HpyF3I CTNAG 2 cut(s) 185, 205
Hsp92II CATG 2 cut(s) 36, 194
Kzo9I GATC 4 cut(s) 61, 97, 159, 181
LpnPI CCDG 5 cut(s) 44, 107, 134, 163, 172
MaeI CTAG 2 cut(s) 20, 318
MaeIII GTNAC 2 cut(s) 163, 232
MalI GATC 4 cut(s) 63, 99, 161, 183
MboI GATC 4 cut(s) 61, 97, 159, 181
MboII GAAGA 1 cut(s) 226
MflI RGATCY 2 cut(s) 61, 97
MhlI GDGCHC 1 cut(s) 51
MlsI TGGCCA 1 cut(s) 223
MluCI AATT 3 cut(s) 277, 295, 325
MluNI TGGCCA 1 cut(s) 223
MmeI TCCRAC 2 cut(s) 40, 89
MnlI CCTC 7 cut(s) 120, 138, 210, 279, 285, 295, 300
Mox20I TGGCCA 1 cut(s) 223
MroXI GAANNNNTTC 1 cut(s) 113
MscI TGGCCA 1 cut(s) 223
MseI TTAA 2 cut(s) 323, 328
Msp20I TGGCCA 1 cut(s) 223
MspR9I CCNGG 1 cut(s) 122
Mva1269I GAATGC 1 cut(s) 113
MvaI CCWGG 1 cut(s) 122
NdeII GATC 4 cut(s) 61, 97, 159, 181
NlaIII CATG 2 cut(s) 36, 194
NlaIV GGNNCC 1 cut(s) 63
NmeAIII GCCGAG 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 163
NspI RCATGY 2 cut(s) 36, 194
PceI AGGCCT 1 cut(s) 203
PctI GAATGC 1 cut(s) 113
PdmI GAANNNNTTC 1 cut(s) 113
PflMI CCANNNNNTGG 1 cut(s) 58
PkrI GCNGC 1 cut(s) 43
PpuMI RGGWCCY 1 cut(s) 147
PshAI GACNNNNGTC 1 cut(s) 71
Psp5II RGGWCCY 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 147
PspPPI RGGWCCY 1 cut(s) 147
PsuI RGATCY 2 cut(s) 61, 97
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
SaqAI TTAA 2 cut(s) 323, 328
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 4 cut(s) 61, 97, 159, 181
Sau96I GGNCC 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 122
SduI GDGCHC 1 cut(s) 51
SetI ASST 7 cut(s) 58, 126, 131, 149, 221, 230, 290
SinI GGWCC 1 cut(s) 147
Sse9I AATT 3 cut(s) 277, 295, 325
SseBI AGGCCT 1 cut(s) 203
SsiI CCGC 2 cut(s) 42, 209
SspMI CTAG 2 cut(s) 20, 318
StuI AGGCCT 1 cut(s) 203
StyD4I CCNGG 1 cut(s) 120
StyI CCWWGG 1 cut(s) 224
TaaI ACNGT 3 cut(s) 73, 169, 238
TasI AATT 3 cut(s) 277, 295, 325
TatI WGTACW 1 cut(s) 29
TauI GCSGC 1 cut(s) 44
Tru1I TTAA 2 cut(s) 323, 328
Tru9I TTAA 2 cut(s) 323, 328
TseFI GTSAC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 163
TspGWI ACGGA 1 cut(s) 155
Van91I CCANNNNNTGG 1 cut(s) 58
VpaK11BI GGWCC 1 cut(s) 147
XapI RAATTY 2 cut(s) 277, 295
XbaI TCTAGA 1 cut(s) 317
XceI RCATGY 2 cut(s) 36, 194
XmnI GAANNNNTTC 1 cut(s) 113
XspI CTAG 2 cut(s) 20, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.