Rh1CG087900

Cysteine desulfurase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0009740
Physical Location & Seq
Forward (+)
18564205 .. 18580131
15927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG087900.1

Sequence Viewer

Length: 621 bp
ATGCAGAGCCGCCTAGCACCAAGCTCTGGATCCGACGGCAGTCCACTGCTTCAAAGAGTGTTCTTGGATTTGTCCGAGGAGGCGTTCAGCCAGGTGAGGTGGGTTCAGACAGAGAGGTCCTGCGACGGGATCGTGACCGTCCATTTTGACAATCTCAGGCATGCAGAGAAGGCCTTGGTAGAGAAGAGGTGGCCAAGGGCTGGCCAAATATCTATTAATCTATATGATAGTCATTGTTCAATACCCAACATTCGGATTTATGGTCCCGTGCCTTCAGAAGATGTGCACCGCGCTGCTCTTTGTTCTTTCAATGTTGAGAATATACACCCTACAGATTTGGCAACTCTTCTTGACCAACATAAAAAACTAGTACTGCCTCAGAAATGCAGCAAACTCTCATTTCTTCCTTTTGCTTCATCTTGCTGGCTTTCTCCTCAGAAGTCCTTGGTGAAAAATCGAGGCATTGTAAACATGGCCCAGATATCAAATTCCCTTTTAGCTTCAAAGGCAGCCAGCACCCAGAAAATTCTGGGTATCCTGGGTTTCTTGTATCCTGCAATGAAAAGCAGGAAACCATTCTTGAGCTGCCAATCCCAGTTAAATTCACAATCAAAACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00450 ko01100 map00450 map01100
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

206

Amino Acids

22.9

Weight (kDa)

9.45

Isoelectric Point (pI)

67.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 115
AccB7I CCANNNNNTGG 2 cut(s) 26, 200
AccII CGCG 1 cut(s) 291
AciI CCGC 2 cut(s) 10, 289
AclWI GGATC 3 cut(s) 24, 37, 137
AcoI YGGCCR 2 cut(s) 191, 202
AcsI RAATTY 3 cut(s) 487, 525, 601
AcuI CTGAAG 1 cut(s) 258
AfaI GTAC 1 cut(s) 372
AfiI CCNNNNNNNGG 4 cut(s) 26, 126, 200, 252
AgsI TTSAA 4 cut(s) 53, 240, 310, 504
AhlI ACTAGT 1 cut(s) 367
AjnI CCWGG 2 cut(s) 90, 537
AluBI AGCT 3 cut(s) 24, 500, 585
AluI AGCT 3 cut(s) 24, 500, 585
Alw21I GWGCWC 1 cut(s) 288
Alw44I GTGCAC 1 cut(s) 284
AlwI GGATC 3 cut(s) 24, 37, 137
AoxI GGCC 4 cut(s) 171, 191, 202, 474
ApaLI GTGCAC 1 cut(s) 284
ApeKI GCWGC 4 cut(s) 293, 387, 509, 585
ApoI RAATTY 3 cut(s) 487, 525, 601
AseI ATTAAT 1 cut(s) 216
Asp700I GAANNNNTTC 1 cut(s) 575
AspLEI GCGC 1 cut(s) 293
AspS9I GGNCC 3 cut(s) 117, 263, 475
AsuHPI GGTGA 2 cut(s) 106, 460
AvaII GGWCC 2 cut(s) 117, 263
BaeGI GKGCMC 1 cut(s) 288
BalI TGGCCA 2 cut(s) 193, 204
BamHI GGATCC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 4 cut(s) 280, 399, 521, 572
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 2 cut(s) 92, 539
BciVI GTATCC 2 cut(s) 545, 561
BcuI ACTAGT 1 cut(s) 367
BfaI CTAG 2 cut(s) 14, 368
BfmI CTRYAG 1 cut(s) 330
BfuI GTATCC 2 cut(s) 545, 561
BisI GCNGC 5 cut(s) 10, 294, 388, 510, 586
BlsI GCNGC 5 cut(s) 11, 295, 389, 511, 587
BmcAI AGTACT 1 cut(s) 372
Bme1390I CCNGG 2 cut(s) 92, 539
Bme18I GGWCC 2 cut(s) 117, 263
BmgT120I GGNCC 3 cut(s) 117, 263, 475
BmiI GGNNCC 2 cut(s) 31, 265
BmrFI CCNGG 2 cut(s) 92, 539
BmrI ACTGGG 1 cut(s) 589
BmuI ACTGGG 1 cut(s) 589
BoxI GACNNNNGTC 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 601
BsaJI CCNNGG 5 cut(s) 75, 174, 194, 444, 538
Bsc4I CCNNNNNNNGG 4 cut(s) 26, 126, 200, 252
Bse1I ACTGG 1 cut(s) 595
Bse3DI GCAATG 1 cut(s) 564
BseBI CCWGG 2 cut(s) 92, 539
BseDI CCNNGG 5 cut(s) 75, 174, 194, 444, 538
BseLI CCNNNNNNNGG 4 cut(s) 26, 126, 200, 252
BseMI GCAATG 1 cut(s) 564
BseMII CTCAG 3 cut(s) 169, 392, 449
BseNI ACTGG 1 cut(s) 595
BseRI GAGGAG 2 cut(s) 92, 423
BseSI GKGCMC 1 cut(s) 288
BseXI GCAGC 4 cut(s) 280, 399, 521, 572
Bsh1236I CGCG 1 cut(s) 291
BshFI GGCC 4 cut(s) 173, 193, 204, 476
BsiHKAI GWGCWC 1 cut(s) 288
BslFI GGGAC 1 cut(s) 249
BslI CCNNNNNNNGG 4 cut(s) 26, 126, 200, 252
BsmFI GGGAC 1 cut(s) 249
BsnI GGCC 4 cut(s) 173, 193, 204, 476
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 2 cut(s) 29, 129
BspACI CCGC 2 cut(s) 10, 289
BspANI GGCC 4 cut(s) 173, 193, 204, 476
BspCNI CTCAG 3 cut(s) 168, 391, 448
BspFNI CGCG 1 cut(s) 291
BspLI GGNNCC 2 cut(s) 31, 265
BspPI GGATC 3 cut(s) 24, 37, 137
BsrDI GCAATG 1 cut(s) 564
BsrI ACTGG 1 cut(s) 595
BssECI CCNNGG 5 cut(s) 75, 174, 194, 444, 538
BssMI GATC 2 cut(s) 29, 129
BssT1I CCWWGG 3 cut(s) 174, 194, 444
Bst2UI CCWGG 2 cut(s) 92, 539
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 2 cut(s) 179, 351
BstC8I GCNNGC 4 cut(s) 162, 202, 425, 514
BstDEI CTNAG 3 cut(s) 155, 378, 435
BstFNI CGCG 1 cut(s) 291
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 2 cut(s) 32, 132
BstMBI GATC 2 cut(s) 29, 129
BstMWI GCNNNNNNNGC 2 cut(s) 170, 506
BstNI CCWGG 2 cut(s) 92, 539
BstNSI RCATGY 1 cut(s) 164
BstPAI GACNNNNGTC 1 cut(s) 39
BstSCI CCNGG 2 cut(s) 90, 537
BstSFI CTRYAG 1 cut(s) 330
BstSLI GKGCMC 1 cut(s) 288
BstUI CGCG 1 cut(s) 291
BstV1I GCAGC 4 cut(s) 280, 399, 521, 572
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
BsuI GTATCC 2 cut(s) 545, 561
BsuRI GGCC 4 cut(s) 173, 193, 204, 476
BtsI GCAGTG 1 cut(s) 44
BtsIMutI CAGTG 1 cut(s) 44
Cac8I GCNNGC 4 cut(s) 162, 202, 425, 514
CfoI GCGC 1 cut(s) 293
Cfr13I GGNCC 3 cut(s) 117, 263, 475
Csp6I GTAC 1 cut(s) 371
CviAII CATG 2 cut(s) 161, 472
CviQI GTAC 1 cut(s) 371
DdeI CTNAG 3 cut(s) 155, 378, 435
DpnI GATC 2 cut(s) 31, 131
DpnII GATC 2 cut(s) 29, 129
DrdI GACNNNNNNGTC 1 cut(s) 115
DseDI GACNNNNNNGTC 1 cut(s) 115
EaeI YGGCCR 2 cut(s) 191, 202
Eam1104I CTCTTC 2 cut(s) 179, 351
EarI CTCTTC 2 cut(s) 179, 351
Eco130I CCWWGG 3 cut(s) 174, 194, 444
Eco147I AGGCCT 1 cut(s) 173
Eco32I GATATC 1 cut(s) 483
Eco47I GGWCC 2 cut(s) 117, 263
Eco57I CTGAAG 1 cut(s) 258
EcoO109I RGGNCCY 1 cut(s) 117
EcoRII CCWGG 2 cut(s) 90, 537
EcoRV GATATC 1 cut(s) 483
EcoT14I CCWWGG 3 cut(s) 174, 194, 444
ErhI CCWWGG 3 cut(s) 174, 194, 444
FaeI CATG 2 cut(s) 164, 475
FaiI YATR 8 cut(s) 162, 223, 225, 261, 323, 360, 473, 619
FaqI GGGAC 1 cut(s) 249
FatI CATG 2 cut(s) 160, 471
Fnu4HI GCNGC 5 cut(s) 10, 294, 388, 510, 586
Fsp4HI GCNGC 5 cut(s) 10, 294, 388, 510, 586
FspBI CTAG 2 cut(s) 14, 368
GlaI GCGC 1 cut(s) 292
GluI GCNGC 5 cut(s) 10, 294, 388, 510, 586
HaeIII GGCC 4 cut(s) 173, 193, 204, 476
HhaI GCGC 1 cut(s) 293
Hin1II CATG 2 cut(s) 164, 475
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HphI GGTGA 2 cut(s) 106, 460
Hpy166II GTNNAC 3 cut(s) 44, 286, 469
Hpy188I TCNGA 7 cut(s) 34, 76, 108, 255, 277, 381, 438
Hpy188III TCNNGA 4 cut(s) 27, 133, 350, 580
Hpy8I GTNNAC 3 cut(s) 44, 286, 469
Hpy99I CGWCG 2 cut(s) 38, 128
HpyAV CCTTC 2 cut(s) 163, 282
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 5 cut(s) 4, 164, 286, 387, 557
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 506
HpyF3I CTNAG 3 cut(s) 155, 378, 435
Hsp92II CATG 2 cut(s) 164, 475
HspAI GCGC 1 cut(s) 291
Kzo9I GATC 2 cut(s) 29, 129
Lsp1109I GCAGC 4 cut(s) 280, 399, 521, 572
MaeI CTAG 2 cut(s) 14, 368
MaeIII GTNAC 1 cut(s) 133
MalI GATC 2 cut(s) 31, 131
MboI GATC 2 cut(s) 29, 129
MboII GAAGA 4 cut(s) 196, 290, 338, 395
MflI RGATCY 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 288
MlsI TGGCCA 2 cut(s) 193, 204
MluCI AATT 3 cut(s) 487, 525, 601
MluNI TGGCCA 2 cut(s) 193, 204
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 8 cut(s) 70, 73, 90, 108, 180, 387, 444, 452
Mox20I TGGCCA 2 cut(s) 193, 204
MroXI GAANNNNTTC 1 cut(s) 575
MscI TGGCCA 2 cut(s) 193, 204
MseI TTAA 2 cut(s) 216, 599
Msp20I TGGCCA 2 cut(s) 193, 204
MspR9I CCNGG 2 cut(s) 92, 539
MvaI CCWGG 2 cut(s) 92, 539
MvnI CGCG 1 cut(s) 291
MwoI GCNNNNNNNGC 2 cut(s) 170, 506
NdeII GATC 2 cut(s) 29, 129
NlaIII CATG 2 cut(s) 164, 475
NlaIV GGNNCC 2 cut(s) 31, 265
NmuCI GTSAC 1 cut(s) 133
NspI RCATGY 1 cut(s) 164
PaeI GCATGC 1 cut(s) 164
PceI AGGCCT 1 cut(s) 173
PdmI GAANNNNTTC 1 cut(s) 575
PflMI CCANNNNNTGG 2 cut(s) 26, 200
PkrI GCNGC 5 cut(s) 11, 295, 389, 511, 587
PpuMI RGGWCCY 1 cut(s) 117
PshAI GACNNNNGTC 1 cut(s) 39
PshBI ATTAAT 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 117
Psp6I CCWGG 2 cut(s) 90, 537
PspGI CCWGG 2 cut(s) 90, 537
PspN4I GGNNCC 2 cut(s) 31, 265
PspPI GGNCC 3 cut(s) 117, 263, 475
PspPPI RGGWCCY 1 cut(s) 117
PsuI RGATCY 1 cut(s) 29
RsaI GTAC 1 cut(s) 372
RsaNI GTAC 1 cut(s) 371
SaqAI TTAA 2 cut(s) 216, 599
SatI GCNGC 5 cut(s) 10, 294, 388, 510, 586
Sau3AI GATC 2 cut(s) 29, 129
Sau96I GGNCC 3 cut(s) 117, 263, 475
ScaI AGTACT 1 cut(s) 372
ScrFI CCNGG 2 cut(s) 92, 539
SduI GDGCHC 1 cut(s) 288
SetI ASST 7 cut(s) 26, 96, 101, 119, 191, 502, 587
SfcI CTRYAG 1 cut(s) 330
SinI GGWCC 2 cut(s) 117, 263
SmlI CTYRAG 1 cut(s) 580
SmoI CTYRAG 1 cut(s) 580
SpeI ACTAGT 1 cut(s) 367
SphI GCATGC 1 cut(s) 164
Sse9I AATT 3 cut(s) 487, 525, 601
SseBI AGGCCT 1 cut(s) 173
SsiI CCGC 2 cut(s) 10, 289
SspMI CTAG 2 cut(s) 14, 368
StuI AGGCCT 1 cut(s) 173
StyD4I CCNGG 2 cut(s) 90, 537
StyI CCWWGG 3 cut(s) 174, 194, 444
TaaI ACNGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 457
TasI AATT 3 cut(s) 487, 525, 601
TatI WGTACW 1 cut(s) 370
TauI GCSGC 1 cut(s) 12
Tru1I TTAA 2 cut(s) 216, 599
Tru9I TTAA 2 cut(s) 216, 599
TscAI CASTG 1 cut(s) 51
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 4 cut(s) 293, 387, 509, 585
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 2 cut(s) 405, 575
TspRI CASTG 1 cut(s) 51
Van91I CCANNNNNTGG 2 cut(s) 26, 200
VneI GTGCAC 1 cut(s) 284
VpaK11BI GGWCC 2 cut(s) 117, 263
VspI ATTAAT 1 cut(s) 216
XapI RAATTY 3 cut(s) 487, 525, 601
XceI RCATGY 1 cut(s) 164
XmnI GAANNNNTTC 1 cut(s) 575
XspI CTAG 2 cut(s) 14, 368
ZrmI AGTACT 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.