Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009740

Physical Location & Seq

Genomic Coordinates Forward (+)

19931971 .. 19932461

Gene Structure 491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007693

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGGTCCCAACGCAAAGGGTAATACTGTCATCGGCGTCCGAGGCACCGACACCATCATTCTCAGATCCCAACGGAAATGCTATGGAGACAGCCAGGCCCAACTGGAACTGGATTGCCTCTCAGATTCCGAAGATCTTAACCTCCTTGGAACCGAGAAAGAGTTCAAGATTTTCATGGAGAAATATGGGAAGAAGTATCCAACTAGAAAGGAGTACATGCAGAGCCGCCGAGCGCTAAGCTCTGGATCCGATGGCAGTCTACGGCTTCAAAGAGTTCTCGTATATGTCCGAGGAGGCGTTCGACCAGGTGAGGTGGGTTCAGATGGAGAGGTCCTGCGACGAGATCGTGACCGTCTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04142 ko04210 map04142 map04210

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

121

Amino Acids

13.54

Weight (kDa)

9.39

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009740)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0428301
rosa_laevigata	RLG00000003070 RLG00000007693 RLG00000026855
rosa_multiflora	Rmu_sc0000745.1_g000003 Rmu_sc0001524.1_g000052 Rmu_sc0002841.1_g000002 Rmu_sc0003153.1_g000010 Rmu_sc0003413.1_g000025 Rmu_sc0012746.1_g000019 Rmu_sc0020260.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186450
rosa_samantha	Rh1CG087900 Rh2AG101200 Rh2AG120600 Rh3AG298400 Rh3BG370900 Rh5AG245100 Rh5DG552400 Rh6CG347700 Rh7CG179600 Rh7CG189200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	259
AciI	CCGC	1 cut(s)	226
AclWI	GGATC	3 cut(s)	60, 240, 253
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	1 cut(s)	215
AfeI	AGCGCT	1 cut(s)	234
AgsI	TTSAA	2 cut(s)	166, 269
AjnI	CCWGG	2 cut(s)	93, 304
AluBI	AGCT	1 cut(s)	240
AluI	AGCT	1 cut(s)	240
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	3 cut(s)	60, 240, 253
Aor51HI	AGCGCT	1 cut(s)	234
AoxI	GGCC	1 cut(s)	96
Asp700I	GAANNNNTTC	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	235
AspS9I	GGNCC	3 cut(s)	5, 97, 331
AsuHPI	GGTGA	1 cut(s)	320
AvaII	GGWCC	2 cut(s)	5, 331
BamHI	GGATCC	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	44
BccI	CCATC	3 cut(s)	62, 245, 317
BceAI	ACGGC	1 cut(s)	278
BciT130I	CCWGG	2 cut(s)	95, 306
BciVI	GTATCC	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	204
BfoI	RGCGCY	1 cut(s)	236
BfuI	GTATCC	1 cut(s)	207
BglII	AGATCT	1 cut(s)	133
BisI	GCNGC	1 cut(s)	226
BlpI	GCTNAGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	227
Bme1390I	CCNGG	2 cut(s)	95, 306
Bme18I	GGWCC	2 cut(s)	5, 331
BmgT120I	GGNCC	3 cut(s)	5, 97, 331
BmiI	GGNNCC	5 cut(s)	6, 7, 46, 151, 247
BmrFI	CCNGG	2 cut(s)	95, 306
Bpu1102I	GCTNAGC	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	3 cut(s)	40, 145, 289
Bse1I	ACTGG	2 cut(s)	108, 114
BseBI	CCWGG	2 cut(s)	95, 306
BseDI	CCNNGG	3 cut(s)	40, 145, 289
BseMII	CTCAG	2 cut(s)	76, 135
BseNI	ACTGG	2 cut(s)	108, 114
BseRI	GAGGAG	1 cut(s)	306
BshFI	GGCC	1 cut(s)	98
BshNI	GGYRCC	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	81
BsnI	GGCC	1 cut(s)	98
Bsp143I	GATC	4 cut(s)	65, 133, 245, 343
Bsp1720I	GCTNAGC	1 cut(s)	236
BspACI	CCGC	1 cut(s)	226
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	2 cut(s)	75, 134
BspLI	GGNNCC	5 cut(s)	6, 7, 46, 151, 247
BspPI	GGATC	3 cut(s)	60, 240, 253
BspT107I	GGYRCC	1 cut(s)	44
BsrI	ACTGG	2 cut(s)	108, 114
BssECI	CCNNGG	3 cut(s)	40, 145, 289
BssMI	GATC	4 cut(s)	65, 133, 245, 343
BssNI	GRCGYC	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	145
Bst2UI	CCWGG	2 cut(s)	95, 306
Bst4CI	ACNGT	2 cut(s)	28, 353
BstACI	GRCGYC	1 cut(s)	36
BstDEI	CTNAG	3 cut(s)	62, 121, 236
BstH2I	RGCGCY	1 cut(s)	236
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	4 cut(s)	68, 136, 248, 346
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	4 cut(s)	65, 133, 245, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNI	CCWGG	2 cut(s)	95, 306
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	2 cut(s)	93, 304
BstX2I	RGATCY	3 cut(s)	65, 133, 245
BstYI	RGATCY	3 cut(s)	65, 133, 245
BsuI	GTATCC	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	98
CfoI	GCGC	1 cut(s)	235
Cfr13I	GGNCC	3 cut(s)	5, 97, 331
CseI	GACGC	1 cut(s)	25
CsiI	ACCWGGT	1 cut(s)	304
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	2 cut(s)	175, 217
CviJI	RGCY	5 cut(s)	93, 98, 225, 240, 265
CviKI_1	RGCY	5 cut(s)	93, 98, 225, 240, 265
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	3 cut(s)	62, 121, 236
DpnI	GATC	4 cut(s)	67, 135, 247, 345
DpnII	GATC	4 cut(s)	65, 133, 245, 343
Eco130I	CCWWGG	1 cut(s)	145
Eco47I	GGWCC	2 cut(s)	5, 331
Eco47III	AGCGCT	1 cut(s)	234
EcoO109I	RGGNCCY	2 cut(s)	5, 331
EcoRII	CCWGG	2 cut(s)	93, 304
EcoT14I	CCWWGG	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	145
FaeI	CATG	2 cut(s)	178, 220
FaiI	YATR	6 cut(s)	84, 176, 186, 218, 283, 285
FatI	CATG	2 cut(s)	174, 216
FblI	GTMKAC	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	226
Fsp4HI	GCNGC	1 cut(s)	226
FspBI	CTAG	1 cut(s)	204
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	1 cut(s)	226
HaeII	RGCGCY	1 cut(s)	236
HaeIII	GGCC	1 cut(s)	98
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	1 cut(s)	235
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	178, 220
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HinfI	GANTC	1 cut(s)	125
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	7 cut(s)	41, 65, 124, 130, 250, 290, 322
Hpy188III	TCNNGA	3 cut(s)	166, 243, 347
Hpy8I	GTNNAC	1 cut(s)	260
Hpy99I	CGWCG	1 cut(s)	342
HpyCH4III	ACNGT	2 cut(s)	28, 353
HpyCH4V	TGCA	1 cut(s)	220
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	3 cut(s)	62, 121, 236
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	178, 220
HspAI	GCGC	1 cut(s)	233
KflI	GGGWCCC	1 cut(s)	5
Kzo9I	GATC	4 cut(s)	65, 133, 245, 343
LpnPI	CCDG	8 cut(s)	80, 89, 95, 107, 228, 291, 318, 347
MabI	ACCWGGT	1 cut(s)	304
MaeI	CTAG	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	4 cut(s)	67, 135, 247, 345
MboI	GATC	4 cut(s)	65, 133, 245, 343
MboII	GAAGA	2 cut(s)	143, 202
MflI	RGATCY	3 cut(s)	65, 133, 245
MmeI	TCCRAC	1 cut(s)	224
MnlI	CCTC	7 cut(s)	35, 128, 152, 284, 287, 304, 322
MroXI	GAANNNNTTC	1 cut(s)	161
MseI	TTAA	1 cut(s)	138
MspR9I	CCNGG	2 cut(s)	95, 306
MvaI	CCWGG	2 cut(s)	95, 306
MwoI	GCNNNNNNNGC	1 cut(s)	42
NdeII	GATC	4 cut(s)	65, 133, 245, 343
NlaIII	CATG	2 cut(s)	178, 220
NlaIV	GGNNCC	5 cut(s)	6, 7, 46, 151, 247
NmeAIII	GCCGAG	1 cut(s)	254
NmuCI	GTSAC	1 cut(s)	347
NspI	RCATGY	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	227
PpuMI	RGGWCCY	2 cut(s)	5, 331
Psp5II	RGGWCCY	2 cut(s)	5, 331
Psp6I	CCWGG	2 cut(s)	93, 304
PspGI	CCWGG	2 cut(s)	93, 304
PspN4I	GGNNCC	5 cut(s)	6, 7, 46, 151, 247
PspPI	GGNCC	3 cut(s)	5, 97, 331
PspPPI	RGGWCCY	2 cut(s)	5, 331
PsuI	RGATCY	3 cut(s)	65, 133, 245
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	1 cut(s)	226
Sau3AI	GATC	4 cut(s)	65, 133, 245, 343
Sau96I	GGNCC	3 cut(s)	5, 97, 331
ScrFI	CCNGG	2 cut(s)	95, 306
SetI	ASST	5 cut(s)	144, 242, 310, 315, 333
SexAI	ACCWGGT	1 cut(s)	304
SinI	GGWCC	2 cut(s)	5, 331
SsiI	CCGC	1 cut(s)	226
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	2 cut(s)	93, 304
StyI	CCWWGG	1 cut(s)	145
TaaI	ACNGT	2 cut(s)	28, 353
TaqI	TCGA	1 cut(s)	301
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	347
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	1 cut(s)	163
TspGWI	ACGGA	1 cut(s)	88
VpaK11BI	GGWCC	2 cut(s)	5, 331
XceI	RCATGY	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	259
XmnI	GAANNNNTTC	1 cut(s)	161
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.