RLG00000003070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009740
Physical Location & Seq
Forward (+)
43933194 .. 43935920
2727 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003070

Sequence Viewer

Length: 429 bp
ATGGCATATGGATCGGGTCCTTGGTCCGCCCAGCTCTTGGGATTGCAGTGTCGCTATTATTTCTGGTCTCGATCGGTTGAATTCGAAATTGGATTTGTCATCGCCGTTGACAACTACAGTGGAGTAGAGGTCGAATTTCGGCGAGATTTTTCAGTGGACGGTGCCGGTCGGATACTTTTCAGTACATGCAGAGCCGCCGAGCACCAAGCTCTGGATCCGACGGCAGTCCACGGCTGCAAAGAGTTCTCGGAGATGGGATTTAGAAGAAGTTCCATCGATGGCCCATACGAAGCAGACTGCTCGAAAGTCCACCGGCGGCAAGGCTCCAAGGAAGCAACTGGCGACGAAGGCTGCCTGAAAGTCGGCTCCAACCACCGGAGTAGTGAAGAAGCCACAAAGGTTCTGCCCTGGAACAGTGGCTCTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.73

Weight (kDa)

5.8

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 161
AccB7I CCANNNNNTGG 2 cut(s) 37, 211
AciI CCGC 3 cut(s) 27, 195, 316
AclWI GGATC 3 cut(s) 19, 209, 222
AcsI RAATTY 2 cut(s) 80, 134
AfaI GTAC 1 cut(s) 184
AfiI CCNNNNNNNGG 3 cut(s) 37, 211, 375
AgsI TTSAA 1 cut(s) 80
AjnI CCWGG 1 cut(s) 407
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AluBI AGCT 2 cut(s) 34, 209
AluI AGCT 2 cut(s) 34, 209
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 72
AlwI GGATC 3 cut(s) 19, 209, 222
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 2 cut(s) 234, 351
ApoI RAATTY 2 cut(s) 80, 134
Asp700I GAANNNNTTC 1 cut(s) 268
AspS9I GGNCC 3 cut(s) 17, 24, 281
AsuII TTCGAA 1 cut(s) 84
AvaII GGWCC 2 cut(s) 17, 24
BamHI GGATCC 1 cut(s) 214
BanI GGYRCC 1 cut(s) 161
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 2 cut(s) 221, 338
BccI CCATC 3 cut(s) 247, 272, 281
BceAI ACGGC 3 cut(s) 89, 237, 247
BcgI CGANNNNNNTGC 3 cut(s) 28, 282, 316
BciT130I CCWGG 1 cut(s) 409
BciVI GTATCC 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 72
BfmI CTRYAG 1 cut(s) 115
BfuI GTATCC 1 cut(s) 165
BisI GCNGC 4 cut(s) 195, 235, 317, 352
BlsI GCNGC 4 cut(s) 196, 236, 318, 353
Bme1390I CCNGG 1 cut(s) 409
Bme18I GGWCC 2 cut(s) 17, 24
BmgT120I GGNCC 3 cut(s) 17, 24, 281
BmiI GGNNCC 5 cut(s) 18, 163, 216, 325, 367
BmrFI CCNGG 1 cut(s) 409
BoxI GACNNNNGTC 1 cut(s) 224
Bpu14I TTCGAA 1 cut(s) 84
Bsa29I ATCGAT 1 cut(s) 276
BsaI GGTCTC 1 cut(s) 72
BsaJI CCNNGG 4 cut(s) 20, 229, 327, 407
BsaWI WCCGGW 1 cut(s) 375
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 211, 375
Bse118I RCCGGY 2 cut(s) 164, 312
Bse1I ACTGG 1 cut(s) 343
BseBI CCWGG 1 cut(s) 409
BseCI ATCGAT 1 cut(s) 276
BseDI CCNNGG 4 cut(s) 20, 229, 327, 407
BseLI CCNNNNNNNGG 3 cut(s) 37, 211, 375
BseNI ACTGG 1 cut(s) 343
BseXI GCAGC 2 cut(s) 221, 338
BseYI CCCAGC 1 cut(s) 30
Bsh1285I CGRYCG 2 cut(s) 74, 169
BshFI GGCC 1 cut(s) 282
BshNI GGYRCC 1 cut(s) 161
BshVI ATCGAT 1 cut(s) 276
BsiEI CGRYCG 2 cut(s) 74, 169
BsiHKAI GWGCWC 1 cut(s) 204
BsiSI CCGG 3 cut(s) 165, 313, 376
BslI CCNNNNNNNGG 3 cut(s) 37, 211, 375
BsmAI GTCTC 1 cut(s) 72
BsnI GGCC 1 cut(s) 282
Bso31I GGTCTC 1 cut(s) 72
Bsp119I TTCGAA 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 3 cut(s) 11, 71, 214
BspACI CCGC 3 cut(s) 27, 195, 316
BspANI GGCC 1 cut(s) 282
BspDI ATCGAT 1 cut(s) 276
BspLI GGNNCC 5 cut(s) 18, 163, 216, 325, 367
BspPI GGATC 3 cut(s) 19, 209, 222
BspT104I TTCGAA 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 72
BsrFI RCCGGY 2 cut(s) 164, 312
BsrI ACTGG 1 cut(s) 343
BssAI RCCGGY 2 cut(s) 164, 312
BssECI CCNNGG 4 cut(s) 20, 229, 327, 407
BssMI GATC 3 cut(s) 11, 71, 214
BssT1I CCWWGG 2 cut(s) 20, 327
Bst2UI CCWGG 1 cut(s) 409
Bst4CI ACNGT 3 cut(s) 119, 161, 416
BstBI TTCGAA 1 cut(s) 84
BstDSI CCRYGG 1 cut(s) 229
BstKTI GATC 3 cut(s) 14, 74, 217
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 3 cut(s) 11, 71, 214
BstMCI CGRYCG 2 cut(s) 74, 169
BstMWI GCNNNNNNNGC 1 cut(s) 348
BstNI CCWGG 1 cut(s) 409
BstNSI RCATGY 1 cut(s) 189
BstPAI GACNNNNGTC 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 407
BstSFI CTRYAG 1 cut(s) 115
BstV1I GCAGC 2 cut(s) 221, 338
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
Bsu15I ATCGAT 1 cut(s) 276
BsuI GTATCC 1 cut(s) 165
BsuRI GGCC 1 cut(s) 282
BsuTUI ATCGAT 1 cut(s) 276
BtgI CCRYGG 1 cut(s) 229
BtgZI GCGATG 1 cut(s) 85
BtsI GCAGTG 1 cut(s) 53
BtsIMutI CAGTG 4 cut(s) 53, 124, 159, 421
Cfr10I RCCGGY 2 cut(s) 164, 312
Cfr13I GGNCC 3 cut(s) 17, 24, 281
ClaI ATCGAT 1 cut(s) 276
Csp6I GTAC 1 cut(s) 183
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviAII CATG 1 cut(s) 186
CviQI GTAC 1 cut(s) 183
DpnI GATC 3 cut(s) 13, 73, 216
DpnII GATC 3 cut(s) 11, 71, 214
EciI GGCGGA 1 cut(s) 16
Eco130I CCWWGG 2 cut(s) 20, 327
Eco31I GGTCTC 1 cut(s) 72
Eco47I GGWCC 2 cut(s) 17, 24
EcoO109I RGGNCCY 1 cut(s) 17
EcoRI GAATTC 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 407
EcoT14I CCWWGG 2 cut(s) 20, 327
ErhI CCWWGG 2 cut(s) 20, 327
FaeI CATG 1 cut(s) 189
FaiI YATR 4 cut(s) 7, 9, 187, 286
FatI CATG 1 cut(s) 185
FauNDI CATATG 1 cut(s) 7
Fnu4HI GCNGC 4 cut(s) 195, 235, 317, 352
Fsp4HI GCNGC 4 cut(s) 195, 235, 317, 352
GluI GCNGC 4 cut(s) 195, 235, 317, 352
GsaI CCCAGC 1 cut(s) 34
HaeIII GGCC 1 cut(s) 282
HapII CCGG 3 cut(s) 165, 313, 376
Hin1II CATG 1 cut(s) 189
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HpaII CCGG 3 cut(s) 165, 313, 376
Hpy166II GTNNAC 4 cut(s) 109, 157, 229, 310
Hpy188I TCNGA 3 cut(s) 171, 219, 250
Hpy188III TCNNGA 2 cut(s) 69, 212
Hpy8I GTNNAC 4 cut(s) 109, 157, 229, 310
Hpy99I CGWCG 2 cut(s) 223, 347
HpyAV CCTTC 1 cut(s) 341
HpyCH4III ACNGT 3 cut(s) 119, 161, 416
HpyCH4V TGCA 3 cut(s) 46, 189, 237
HpyF10VI GCNNNNNNNGC 1 cut(s) 348
Hsp92II CATG 1 cut(s) 189
Kzo9I GATC 3 cut(s) 11, 71, 214
LmnI GCTCC 2 cut(s) 329, 371
Lsp1109I GCAGC 2 cut(s) 221, 338
MalI GATC 3 cut(s) 13, 73, 216
MboI GATC 3 cut(s) 11, 71, 214
MboII GAAGA 2 cut(s) 276, 398
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 3 cut(s) 80, 87, 134
MmeI TCCRAC 3 cut(s) 149, 242, 393
MnlI CCTC 1 cut(s) 121
MroXI GAANNNNTTC 1 cut(s) 268
MspI CCGG 3 cut(s) 165, 313, 376
MspR9I CCNGG 1 cut(s) 409
MvaI CCWGG 1 cut(s) 409
MwoI GCNNNNNNNGC 1 cut(s) 348
NdeI CATATG 1 cut(s) 7
NdeII GATC 3 cut(s) 11, 71, 214
NlaIII CATG 1 cut(s) 189
NlaIV GGNNCC 5 cut(s) 18, 163, 216, 325, 367
NmeAIII GCCGAG 1 cut(s) 223
NspI RCATGY 1 cut(s) 189
NspV TTCGAA 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 268
PflMI CCANNNNNTGG 2 cut(s) 37, 211
PkrI GCNGC 4 cut(s) 196, 236, 318, 353
Ple19I CGATCG 1 cut(s) 74
PpuMI RGGWCCY 1 cut(s) 17
PshAI GACNNNNGTC 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 407
PspFI CCCAGC 1 cut(s) 30
PspGI CCWGG 1 cut(s) 407
PspN4I GGNNCC 5 cut(s) 18, 163, 216, 325, 367
PspPI GGNCC 3 cut(s) 17, 24, 281
PspPPI RGGWCCY 1 cut(s) 17
PsuI RGATCY 1 cut(s) 214
PvuI CGATCG 1 cut(s) 74
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
SatI GCNGC 4 cut(s) 195, 235, 317, 352
Sau3AI GATC 3 cut(s) 11, 71, 214
Sau96I GGNCC 3 cut(s) 17, 24, 281
ScrFI CCNGG 1 cut(s) 409
SduI GDGCHC 1 cut(s) 204
SetI ASST 4 cut(s) 36, 132, 211, 402
SfcI CTRYAG 1 cut(s) 115
SfuI TTCGAA 1 cut(s) 84
SgrAI CRCCGGYG 1 cut(s) 312
SinI GGWCC 2 cut(s) 17, 24
Sse9I AATT 3 cut(s) 80, 87, 134
SsiI CCGC 3 cut(s) 27, 195, 316
StyD4I CCNGG 1 cut(s) 407
StyI CCWWGG 2 cut(s) 20, 327
TaaI ACNGT 3 cut(s) 119, 161, 416
TaqI TCGA 5 cut(s) 70, 84, 132, 276, 302
TasI AATT 3 cut(s) 80, 87, 134
TatI WGTACW 1 cut(s) 182
TauI GCSGC 2 cut(s) 197, 319
TscAI CASTG 4 cut(s) 53, 124, 159, 421
TseI GCWGC 2 cut(s) 234, 351
TspRI CASTG 4 cut(s) 53, 124, 159, 421
Van91I CCANNNNNTGG 2 cut(s) 37, 211
VpaK11BI GGWCC 2 cut(s) 17, 24
XapI RAATTY 2 cut(s) 80, 134
XceI RCATGY 1 cut(s) 189
XmnI GAANNNNTTC 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.