Rh3BG370900

Protein terminal ear1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0009740
Physical Location & Seq
Reverse (-)
46767177 .. 46769005
1829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG370900.1

Sequence Viewer

Length: 381 bp
ATGGATCAGGCCCTTGGTCCGCCTAGCTCTTGGGATTGCAGCGTCACTATTATTTCTGGTCTCGATCGAGCCGCCGAGCACCAAGCTCTGGATCCGACGGCAGTCCACGGCTTCAAAGAGTTCTCGGATCTGTCCGAGGAGGAGTTCGGCCAGGTGAGGTGGGTTCAGACGGAGAGGTCCTGCGACGGGATCGTGACCGTCCATTTTGACGATCTCAGGCATGCAAAGAAGGCCTTGGCGGAGAAGAGGTGGCCAAGAAAAAGGTTATATGTTCTTCAGCCACAGTATTCAATTGGTCAATACTATGCTCCTTTGGATTTGACTGGTCGAAGGATAGGTTCGACTGGTCAGTTAAGCTTTTGTGTTCCTCTGGGTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 RRM_2

Protein Analysis

126

Amino Acids

14.16

Weight (kDa)

6.05

Isoelectric Point (pI)

53.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 175
AccB7I CCANNNNNTGG 1 cut(s) 88
AciI CCGC 3 cut(s) 20, 72, 239
AclWI GGATC 5 cut(s) 12, 86, 99, 135, 197
AcoI YGGCCR 2 cut(s) 148, 251
AcuI CTGAAG 1 cut(s) 260
AfiI CCNNNNNNNGG 2 cut(s) 88, 186
AgsI TTSAA 2 cut(s) 115, 291
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 3 cut(s) 27, 86, 357
AluI AGCT 3 cut(s) 27, 86, 357
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 65
AlwI GGATC 5 cut(s) 12, 86, 99, 135, 197
AoxI GGCC 4 cut(s) 9, 148, 231, 251
ApeKI GCWGC 1 cut(s) 39
AspS9I GGNCC 3 cut(s) 10, 17, 177
AsuHPI GGTGA 1 cut(s) 166
AvaII GGWCC 2 cut(s) 17, 177
BalI TGGCCA 1 cut(s) 253
BamHI GGATCC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 51
BceAI ACGGC 2 cut(s) 114, 124
BciT130I CCWGG 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 65
BfaI CTAG 1 cut(s) 24
BisI GCNGC 2 cut(s) 40, 72
BlsI GCNGC 2 cut(s) 41, 73
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 2 cut(s) 17, 177
BmgT120I GGNCC 3 cut(s) 10, 17, 177
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 1 cut(s) 152
BoxI GACNNNNGTC 1 cut(s) 101
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 4 cut(s) 13, 106, 135, 234
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 186
Bse1I ACTGG 2 cut(s) 328, 349
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 4 cut(s) 13, 106, 135, 234
BseLI CCNNNNNNNGG 2 cut(s) 88, 186
BseMII CTCAG 1 cut(s) 229
BseNI ACTGG 2 cut(s) 328, 349
BseRI GAGGAG 2 cut(s) 152, 155
BseXI GCAGC 1 cut(s) 51
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 4 cut(s) 11, 150, 233, 253
BsiEI CGRYCG 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 81
BslI CCNNNNNNNGG 2 cut(s) 88, 186
BsmAI GTCTC 1 cut(s) 65
BsnI GGCC 4 cut(s) 11, 150, 233, 253
Bso31I GGTCTC 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 6 cut(s) 4, 64, 91, 127, 189, 211
BspACI CCGC 3 cut(s) 20, 72, 239
BspANI GGCC 4 cut(s) 11, 150, 233, 253
BspCNI CTCAG 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 5 cut(s) 12, 86, 99, 135, 197
BspTNI GGTCTC 1 cut(s) 65
BsrI ACTGG 2 cut(s) 328, 349
BssECI CCNNGG 4 cut(s) 13, 106, 135, 234
BssMI GATC 6 cut(s) 4, 64, 91, 127, 189, 211
BssT1I CCWWGG 2 cut(s) 13, 234
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 2 cut(s) 199, 285
Bst6I CTCTTC 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 1 cut(s) 215
BstDSI CCRYGG 1 cut(s) 106
BstKTI GATC 6 cut(s) 7, 67, 94, 130, 192, 214
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 6 cut(s) 4, 64, 91, 127, 189, 211
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 224
BstPAI GACNNNNGTC 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 51
BstX2I RGATCY 2 cut(s) 91, 127
BstYI RGATCY 2 cut(s) 91, 127
BsuRI GGCC 4 cut(s) 11, 150, 233, 253
BtgI CCRYGG 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 222
Cfr13I GGNCC 3 cut(s) 10, 17, 177
CseI GACGC 1 cut(s) 31
CviAII CATG 1 cut(s) 221
DdeI CTNAG 1 cut(s) 215
DpnI GATC 6 cut(s) 6, 66, 93, 129, 191, 213
DpnII GATC 6 cut(s) 4, 64, 91, 127, 189, 211
DrdI GACNNNNNNGTC 1 cut(s) 175
DseDI GACNNNNNNGTC 1 cut(s) 175
EaeI YGGCCR 2 cut(s) 148, 251
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
EciI GGCGGA 2 cut(s) 9, 254
Eco130I CCWWGG 2 cut(s) 13, 234
Eco147I AGGCCT 1 cut(s) 233
Eco31I GGTCTC 1 cut(s) 65
Eco47I GGWCC 2 cut(s) 17, 177
Eco57I CTGAAG 1 cut(s) 260
EcoO109I RGGNCCY 2 cut(s) 10, 177
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 2 cut(s) 13, 234
ErhI CCWWGG 2 cut(s) 13, 234
FaeI CATG 1 cut(s) 224
FaiI YATR 4 cut(s) 222, 268, 270, 306
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FatI CATG 1 cut(s) 220
Fnu4HI GCNGC 2 cut(s) 40, 72
Fsp4HI GCNGC 2 cut(s) 40, 72
FspBI CTAG 1 cut(s) 24
GluI GCNGC 2 cut(s) 40, 72
HaeIII GGCC 4 cut(s) 11, 150, 233, 253
HgaI GACGC 1 cut(s) 31
Hin1II CATG 1 cut(s) 224
HindIII AAGCTT 1 cut(s) 355
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 4 cut(s) 96, 127, 136, 168
Hpy188III TCNNGA 3 cut(s) 62, 89, 193
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 2 cut(s) 100, 188
HpyAV CCTTC 2 cut(s) 223, 324
HpyCH4III ACNGT 2 cut(s) 199, 285
HpyCH4V TGCA 2 cut(s) 39, 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 1 cut(s) 215
Hsp92II CATG 1 cut(s) 224
Kzo9I GATC 6 cut(s) 4, 64, 91, 127, 189, 211
LmnI GCTCC 1 cut(s) 313
LpnPI CCDG 9 cut(s) 42, 74, 137, 164, 193, 202, 309, 330, 356
Lsp1109I GCAGC 1 cut(s) 51
MaeI CTAG 1 cut(s) 24
MaeIII GTNAC 2 cut(s) 43, 193
MalI GATC 6 cut(s) 6, 66, 93, 129, 191, 213
MboI GATC 6 cut(s) 4, 64, 91, 127, 189, 211
MboII GAAGA 2 cut(s) 256, 266
MfeI CAATTG 1 cut(s) 291
MflI RGATCY 2 cut(s) 91, 127
MhlI GDGCHC 1 cut(s) 81
MlsI TGGCCA 1 cut(s) 253
MluCI AATT 1 cut(s) 291
MluNI TGGCCA 1 cut(s) 253
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 6 cut(s) 130, 133, 150, 168, 240, 378
Mox20I TGGCCA 1 cut(s) 253
MscI TGGCCA 1 cut(s) 253
MseI TTAA 1 cut(s) 353
Msp20I TGGCCA 1 cut(s) 253
MspR9I CCNGG 1 cut(s) 152
MunI CAATTG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 230
NdeII GATC 6 cut(s) 4, 64, 91, 127, 189, 211
NlaIII CATG 1 cut(s) 224
NlaIV GGNNCC 1 cut(s) 93
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 2 cut(s) 43, 193
NspI RCATGY 1 cut(s) 224
PaeI GCATGC 1 cut(s) 224
PceI AGGCCT 1 cut(s) 233
PflMI CCANNNNNTGG 1 cut(s) 88
PkrI GCNGC 2 cut(s) 41, 73
Ple19I CGATCG 1 cut(s) 67
PpuMI RGGWCCY 1 cut(s) 177
PshAI GACNNNNGTC 1 cut(s) 101
Psp5II RGGWCCY 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 3 cut(s) 10, 17, 177
PspPPI RGGWCCY 1 cut(s) 177
PsuI RGATCY 2 cut(s) 91, 127
PvuI CGATCG 1 cut(s) 67
SaqAI TTAA 1 cut(s) 353
SatI GCNGC 2 cut(s) 40, 72
Sau3AI GATC 6 cut(s) 4, 64, 91, 127, 189, 211
Sau96I GGNCC 3 cut(s) 10, 17, 177
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 1 cut(s) 81
SetI ASST 9 cut(s) 29, 88, 156, 161, 179, 251, 266, 340, 359
SinI GGWCC 2 cut(s) 17, 177
SphI GCATGC 1 cut(s) 224
Sse9I AATT 1 cut(s) 291
SseBI AGGCCT 1 cut(s) 233
SsiI CCGC 3 cut(s) 20, 72, 239
SspMI CTAG 1 cut(s) 24
StuI AGGCCT 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 2 cut(s) 13, 234
TaaI ACNGT 2 cut(s) 199, 285
TaqI TCGA 4 cut(s) 63, 67, 328, 341
TasI AATT 1 cut(s) 291
TauI GCSGC 1 cut(s) 74
Tru1I TTAA 1 cut(s) 353
Tru9I TTAA 1 cut(s) 353
TseFI GTSAC 2 cut(s) 43, 193
TseI GCWGC 1 cut(s) 39
Tsp45I GTSAC 2 cut(s) 43, 193
TspGWI ACGGA 1 cut(s) 185
Van91I CCANNNNNTGG 1 cut(s) 88
VpaK11BI GGWCC 2 cut(s) 17, 177
XceI RCATGY 1 cut(s) 224
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.