Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020260.1

Orthogroup ID

OG0009740

Physical Location & Seq

Genomic Coordinates Reverse (-)

954 .. 2129

Gene Structure 1176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020260.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atggctaaaacaggtttcgtcccattttcaggtgacctgaacccgggagtcgaggagttcaggcccagaaacacaaaatcgataccccttttcagcccactaccatcgcccgcggggcccactcgggcggtgctgctgaggctggtgccgtgtgacgtcagcgaggtgacgattcagagggagttggtagcgttcgagcaggtgaggtgggtccagatggagaggtcctgcgacgggatcgtgactgtccatttttacgatctcaggcaagcagagaaggccttggctgagaagaggtggccaaggtgtgttattgtgtttgggtatgcggttaatcatggatttgagagtccacgtctggagcttgggctgagctggcagccgggcagactgggtcaggaaaatagtcacaggcgccctttttttggactgggtcatgcaaagccaaagtttggctggtcaagcttggcccggtggaagcaaatttttccttctagccggtcaacacatcatcaaaatgacatggcagccagtcaaaacgagaccggtggacttgctctcaaaggcttagctagaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

193

Amino Acids

21.69

Weight (kDa)

9.87

Isoelectric Point (pI)

62.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009740)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0428301
rosa_laevigata	RLG00000003070 RLG00000007693 RLG00000026855
rosa_multiflora	Rmu_sc0000745.1_g000003 Rmu_sc0001524.1_g000052 Rmu_sc0002841.1_g000002 Rmu_sc0003153.1_g000010 Rmu_sc0003413.1_g000025 Rmu_sc0012746.1_g000019 Rmu_sc0020260.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186450
rosa_samantha	Rh1CG087900 Rh2AG101200 Rh2AG120600 Rh3AG298400 Rh3BG370900 Rh5AG245100 Rh5DG552400 Rh6CG347700 Rh7CG179600 Rh7CG189200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	190
AatII	GACGTC	1 cut(s)	159
Acc36I	ACCTGC	1 cut(s)	190
AccB1I	GGYRCC	2 cut(s)	145, 414
AccB7I	CCANNNNNTGG	1 cut(s)	452
AccII	CGCG	1 cut(s)	113
AciI	CCGC	4 cut(s)	111, 113, 128, 329
AclWI	GGATC	1 cut(s)	245
AcoI	YGGCCR	1 cut(s)	299
AcsI	RAATTY	2 cut(s)	483, 576
AcyI	GRCGYC	2 cut(s)	156, 415
AfiI	CCNNNNNNNGG	5 cut(s)	29, 43, 234, 425, 452
AgeI	ACCGGT	1 cut(s)	545
AjiI	CACGTC	1 cut(s)	356
AluBI	AGCT	4 cut(s)	364, 375, 465, 572
AluI	AGCT	4 cut(s)	364, 375, 465, 572
Alw26I	GTCTC	1 cut(s)	536
AlwI	GGATC	1 cut(s)	245
Ama87I	CYCGRG	2 cut(s)	43, 123
AoxI	GGCC	5 cut(s)	62, 116, 279, 299, 468
ApaI	GGGCCC	1 cut(s)	120
ApeKI	GCWGC	3 cut(s)	133, 379, 527
ApoI	RAATTY	2 cut(s)	483, 576
AsiGI	ACCGGT	1 cut(s)	545
AspLEI	GCGC	1 cut(s)	417
AspS9I	GGNCC	6 cut(s)	63, 116, 117, 211, 225, 469
AsuC2I	CCSGG	4 cut(s)	44, 45, 384, 472
AsuHPI	GGTGA	3 cut(s)	44, 178, 214
AvaI	CYCGRG	2 cut(s)	43, 123
AvaII	GGWCC	2 cut(s)	211, 225
BaeGI	GKGCMC	1 cut(s)	120
BalI	TGGCCA	1 cut(s)	301
BanI	GGYRCC	2 cut(s)	145, 414
BanII	GRGCYC	1 cut(s)	120
BbvCI	CCTCAGC	1 cut(s)	137
BbvI	GCAGC	3 cut(s)	120, 391, 539
BccI	CCATC	2 cut(s)	112, 211
BceAI	ACGGC	1 cut(s)	133
BcnI	CCSGG	4 cut(s)	44, 45, 384, 472
BcoDI	GTCTC	1 cut(s)	536
BfaI	CTAG	2 cut(s)	495, 573
BfoI	RGCGCY	1 cut(s)	418
BfuAI	ACCTGC	1 cut(s)	190
BglI	GCCNNNNNGGC	1 cut(s)	115
BisI	GCNGC	3 cut(s)	134, 380, 528
BlpI	GCTNAGC	2 cut(s)	371, 568
BlsI	GCNGC	3 cut(s)	135, 381, 529
Bme1390I	CCNGG	4 cut(s)	44, 45, 384, 472
Bme18I	GGWCC	2 cut(s)	211, 225
BmeT110I	CYCGRG	2 cut(s)	43, 123
BmgBI	CACGTC	1 cut(s)	356
BmgT120I	GGNCC	6 cut(s)	63, 116, 117, 211, 225, 469
BmiI	GGNNCC	5 cut(s)	117, 118, 147, 212, 416
BmrFI	CCNGG	4 cut(s)	44, 45, 384, 472
BmrI	ACTGGG	2 cut(s)	401, 440
BmuI	ACTGGG	2 cut(s)	401, 440
BpmI	CTGGAG	1 cut(s)	380
Bpu10I	CCTNAGC	1 cut(s)	137
Bpu1102I	GCTNAGC	2 cut(s)	371, 568
BpuMI	CCSGG	4 cut(s)	44, 45, 384, 472
Bsa29I	ATCGAT	1 cut(s)	80
BsaHI	GRCGYC	2 cut(s)	156, 415
BsaI	GGTCTC	1 cut(s)	536
BsaJI	CCNNGG	4 cut(s)	43, 111, 282, 302
BsaWI	WCCGGW	1 cut(s)	545
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 43, 234, 425, 452
Bse118I	RCCGGY	2 cut(s)	498, 545
Bse1I	ACTGG	3 cut(s)	396, 435, 531
BseCI	ATCGAT	1 cut(s)	80
BseDI	CCNNGG	4 cut(s)	43, 111, 282, 302
BseLI	CCNNNNNNNGG	5 cut(s)	29, 43, 234, 425, 452
BseMII	CTCAG	4 cut(s)	128, 277, 279, 362
BseNI	ACTGG	3 cut(s)	396, 435, 531
BseRI	GAGGAG	1 cut(s)	68
BseSI	GKGCMC	1 cut(s)	120
BseXI	GCAGC	3 cut(s)	120, 391, 539
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	5 cut(s)	64, 118, 281, 301, 470
BshNI	GGYRCC	2 cut(s)	145, 414
BshTI	ACCGGT	1 cut(s)	545
BshVI	ATCGAT	1 cut(s)	80
BsiHKCI	CYCGRG	2 cut(s)	43, 123
BsiSI	CCGG	5 cut(s)	44, 383, 472, 499, 546
BslFI	GGGAC	1 cut(s)	5
BslI	CCNNNNNNNGG	5 cut(s)	29, 43, 234, 425, 452
BsmAI	GTCTC	1 cut(s)	536
BsmFI	GGGAC	1 cut(s)	5
BsnI	GGCC	5 cut(s)	64, 118, 281, 301, 470
Bso31I	GGTCTC	1 cut(s)	536
BsoBI	CYCGRG	2 cut(s)	43, 123
Bsp120I	GGGCCC	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	2 cut(s)	237, 259
Bsp1720I	GCTNAGC	2 cut(s)	371, 568
BspACI	CCGC	4 cut(s)	111, 113, 128, 329
BspANI	GGCC	5 cut(s)	64, 118, 281, 301, 470
BspCNI	CTCAG	4 cut(s)	129, 276, 280, 363
BspDI	ATCGAT	1 cut(s)	80
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	5 cut(s)	117, 118, 147, 212, 416
BspMI	ACCTGC	1 cut(s)	190
BspPI	GGATC	1 cut(s)	245
BspT107I	GGYRCC	2 cut(s)	145, 414
BspTNI	GGTCTC	1 cut(s)	536
BsrFI	RCCGGY	2 cut(s)	498, 545
BsrI	ACTGG	3 cut(s)	396, 435, 531
BssAI	RCCGGY	2 cut(s)	498, 545
BssECI	CCNNGG	4 cut(s)	43, 111, 282, 302
BssMI	GATC	2 cut(s)	237, 259
BssNI	GRCGYC	2 cut(s)	156, 415
BssT1I	CCWWGG	2 cut(s)	282, 302
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	287
BstACI	GRCGYC	2 cut(s)	156, 415
BstC8I	GCNNGC	3 cut(s)	111, 270, 377
BstDEI	CTNAG	5 cut(s)	137, 263, 288, 371, 568
BstDSI	CCRYGG	1 cut(s)	111
BstEII	GGTNACC	1 cut(s)	32
BstFNI	CGCG	1 cut(s)	113
BstH2I	RGCGCY	1 cut(s)	418
BstHHI	GCGC	1 cut(s)	417
BstKTI	GATC	2 cut(s)	240, 262
BstMAI	GTCTC	1 cut(s)	536
BstMBI	GATC	2 cut(s)	237, 259
BstMWI	GCNNNNNNNGC	5 cut(s)	115, 139, 278, 376, 462
BstPI	GGTNACC	1 cut(s)	32
BstSCI	CCNGG	4 cut(s)	42, 43, 382, 470
BstSLI	GKGCMC	1 cut(s)	120
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	3 cut(s)	120, 391, 539
Bsu15I	ATCGAT	1 cut(s)	80
BsuRI	GGCC	5 cut(s)	64, 118, 281, 301, 470
BsuTUI	ATCGAT	1 cut(s)	80
BtgI	CCRYGG	1 cut(s)	111
BtgZI	GCGATG	1 cut(s)	90
BtrI	CACGTC	1 cut(s)	356
BveI	ACCTGC	1 cut(s)	190
Cac8I	GCNNGC	3 cut(s)	111, 270, 377
CfoI	GCGC	1 cut(s)	417
Cfr10I	RCCGGY	2 cut(s)	498, 545
Cfr13I	GGNCC	6 cut(s)	63, 116, 117, 211, 225, 469
Cfr42I	CCGCGG	1 cut(s)	114
Cfr9I	CCCGGG	1 cut(s)	43
ClaI	ATCGAT	1 cut(s)	80
CspAI	ACCGGT	1 cut(s)	545
CviAII	CATG	3 cut(s)	338, 437, 523
DdeI	CTNAG	5 cut(s)	137, 263, 288, 371, 568
DinI	GGCGCC	1 cut(s)	416
DpnI	GATC	2 cut(s)	239, 261
DpnII	GATC	2 cut(s)	237, 259
EaeI	YGGCCR	1 cut(s)	299
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
Eco130I	CCWWGG	2 cut(s)	282, 302
Eco147I	AGGCCT	1 cut(s)	281
Eco24I	GRGCYC	1 cut(s)	120
Eco31I	GGTCTC	1 cut(s)	536
Eco47I	GGWCC	2 cut(s)	211, 225
Eco88I	CYCGRG	2 cut(s)	43, 123
Eco91I	GGTNACC	1 cut(s)	32
EcoO109I	RGGNCCY	2 cut(s)	116, 225
EcoO65I	GGTNACC	1 cut(s)	32
EcoT14I	CCWWGG	2 cut(s)	282, 302
EcoT38I	GRGCYC	1 cut(s)	120
EgeI	GGCGCC	1 cut(s)	416
EheI	GGCGCC	1 cut(s)	416
ErhI	CCWWGG	2 cut(s)	282, 302
FaeI	CATG	3 cut(s)	341, 440, 526
FaiI	YATR	4 cut(s)	327, 339, 438, 524
FaqI	GGGAC	1 cut(s)	5
FatI	CATG	3 cut(s)	337, 436, 522
FauI	CCCGC	2 cut(s)	106, 118
Fnu4HI	GCNGC	3 cut(s)	134, 380, 528
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	3 cut(s)	134, 380, 528
FspBI	CTAG	2 cut(s)	495, 573
GlaI	GCGC	1 cut(s)	416
GluI	GCNGC	3 cut(s)	134, 380, 528
GsuI	CTGGAG	1 cut(s)	380
HaeII	RGCGCY	1 cut(s)	418
HaeIII	GGCC	5 cut(s)	64, 118, 281, 301, 470
HapII	CCGG	5 cut(s)	44, 383, 472, 499, 546
HhaI	GCGC	1 cut(s)	417
Hin1I	GRCGYC	2 cut(s)	156, 415
Hin1II	CATG	3 cut(s)	341, 440, 526
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HincII	GTYRAC	1 cut(s)	504
HindII	GTYRAC	1 cut(s)	504
HindIII	AAGCTT	1 cut(s)	463
HinfI	GANTC	3 cut(s)	48, 172, 349
HpaII	CCGG	5 cut(s)	44, 383, 472, 499, 546
HphI	GGTGA	3 cut(s)	44, 178, 214
Hpy166II	GTNNAC	3 cut(s)	353, 504, 551
Hpy188I	TCNGA	1 cut(s)	177
Hpy188III	TCNNGA	4 cut(s)	214, 241, 359, 398
Hpy8I	GTNNAC	3 cut(s)	353, 504, 551
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	2 cut(s)	271, 501
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	2 cut(s)	156, 355
HpyCH4V	TGCA	1 cut(s)	440
HpyF10VI	GCNNNNNNNGC	5 cut(s)	115, 139, 278, 376, 462
HpyF3I	CTNAG	5 cut(s)	137, 263, 288, 371, 568
HpySE526I	ACGT	2 cut(s)	156, 355
Hsp92I	GRCGYC	2 cut(s)	156, 415
Hsp92II	CATG	3 cut(s)	341, 440, 526
HspAI	GCGC	1 cut(s)	415
KasI	GGCGCC	1 cut(s)	414
KspI	CCGCGG	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	237, 259
LmnI	GCTCC	1 cut(s)	361
Lsp1109I	GCAGC	3 cut(s)	120, 391, 539
MaeI	CTAG	2 cut(s)	495, 573
MaeII	ACGT	2 cut(s)	156, 355
MaeIII	GTNAC	5 cut(s)	32, 152, 166, 241, 407
MalI	GATC	2 cut(s)	239, 261
MboI	GATC	2 cut(s)	237, 259
MboII	GAAGA	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	120
MlsI	TGGCCA	1 cut(s)	301
MluCI	AATT	2 cut(s)	483, 576
MluNI	TGGCCA	1 cut(s)	301
Mly113I	GGCGCC	1 cut(s)	415
MlyI	GAGTC	2 cut(s)	57, 358
MnlI	CCTC	7 cut(s)	46, 132, 157, 171, 198, 216, 288
Mox20I	TGGCCA	1 cut(s)	301
MscI	TGGCCA	1 cut(s)	301
MseI	TTAA	2 cut(s)	333, 580
MslI	CAYNNNNRTG	1 cut(s)	516
Msp20I	TGGCCA	1 cut(s)	301
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	5 cut(s)	44, 383, 472, 499, 546
MspR9I	CCNGG	4 cut(s)	44, 45, 384, 472
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	5 cut(s)	115, 139, 278, 376, 462
NarI	GGCGCC	1 cut(s)	415
NciI	CCSGG	4 cut(s)	44, 45, 384, 472
NdeII	GATC	2 cut(s)	237, 259
NlaIII	CATG	3 cut(s)	341, 440, 526
NlaIV	GGNNCC	5 cut(s)	117, 118, 147, 212, 416
NmuCI	GTSAC	5 cut(s)	32, 152, 166, 241, 407
PaqCI	CACCTGC	1 cut(s)	190
PceI	AGGCCT	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	172
PflFI	GACNNNGTC	2 cut(s)	393, 432
PflMI	CCANNNNNTGG	1 cut(s)	452
PinAI	ACCGGT	1 cut(s)	545
PkrI	GCNGC	3 cut(s)	135, 381, 529
PleI	GAGTC	2 cut(s)	56, 357
PluTI	GGCGCC	1 cut(s)	418
PpsI	GAGTC	2 cut(s)	56, 357
PpuMI	RGGWCCY	1 cut(s)	225
Psp5II	RGGWCCY	1 cut(s)	225
PspEI	GGTNACC	1 cut(s)	32
PspN4I	GGNNCC	5 cut(s)	117, 118, 147, 212, 416
PspOMI	GGGCCC	1 cut(s)	116
PspPI	GGNCC	6 cut(s)	63, 116, 117, 211, 225, 469
PspPPI	RGGWCCY	1 cut(s)	225
PsyI	GACNNNGTC	2 cut(s)	393, 432
RseI	CAYNNNNRTG	1 cut(s)	516
SacII	CCGCGG	1 cut(s)	114
SaqAI	TTAA	2 cut(s)	333, 580
SatI	GCNGC	3 cut(s)	134, 380, 528
Sau3AI	GATC	2 cut(s)	237, 259
Sau96I	GGNCC	6 cut(s)	63, 116, 117, 211, 225, 469
SchI	GAGTC	2 cut(s)	57, 358
ScrFI	CCNGG	4 cut(s)	44, 45, 384, 472
SduI	GDGCHC	1 cut(s)	120
SfoI	GGCGCC	1 cut(s)	416
Sfr303I	CCGCGG	1 cut(s)	114
SgrBI	CCGCGG	1 cut(s)	114
SinI	GGWCC	2 cut(s)	211, 225
SmaI	CCCGGG	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	516
Sse9I	AATT	2 cut(s)	483, 576
SseBI	AGGCCT	1 cut(s)	281
SsiI	CCGC	4 cut(s)	111, 113, 128, 329
SspDI	GGCGCC	1 cut(s)	414
SspMI	CTAG	2 cut(s)	495, 573
StuI	AGGCCT	1 cut(s)	281
StyD4I	CCNGG	4 cut(s)	42, 43, 382, 470
StyI	CCWWGG	2 cut(s)	282, 302
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	2 cut(s)	159, 358
TaqI	TCGA	3 cut(s)	51, 80, 195
TasI	AATT	2 cut(s)	483, 576
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	2 cut(s)	333, 580
Tru9I	TTAA	2 cut(s)	333, 580
TseFI	GTSAC	5 cut(s)	32, 152, 166, 241, 407
TseI	GCWGC	3 cut(s)	133, 379, 527
Tsp45I	GTSAC	5 cut(s)	32, 152, 166, 241, 407
TspMI	CCCGGG	1 cut(s)	43
Tth111I	GACNNNGTC	2 cut(s)	393, 432
Van91I	CCANNNNNTGG	1 cut(s)	452
VpaK11BI	GGWCC	2 cut(s)	211, 225
XapI	RAATTY	2 cut(s)	483, 576
XcmI	CCANNNNNNNNNTGG	1 cut(s)	453
XmaI	CCCGGG	1 cut(s)	43
XspI	CTAG	2 cut(s)	495, 573
ZraI	GACGTC	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.