Rh5AG245100

Protein terminal ear1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0009740
Physical Location & Seq
Forward (+)
30172218 .. 30172567
350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG245100.1

Sequence Viewer

Length: 350 bp
ATGGCTAAAACCGATTTCGTCCCATTTTCGGGTGGCCTGGACCCGGGAGTCGAGGAGTTCAGGCCCAGAAACACAAAATCGATACCCCTTTTCAGCTCACTACCACCGCCTACCACATTAAGTTTACTATCCCTACCCGGGTGCACGCTCCGATTTCGCGCGCCTCTGGCCACGGGGCCGACTTGGGCGGTGTTGTGTGATGTCAGCAAGGTGACGATTCATAGGGAGTTGGAGGTGTTCGAGCAGGTGAGCTGGGTCCAAATGGAGAGGTCCTGCGACGGGATCATGACCGTCCATTTTTACGATCTCAGGCAAGTAGAGAAGGCCTTAGCGGAGAAGAGGTGGCCAAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 RRM_2

Protein Analysis

116

Amino Acids

13.08

Weight (kDa)

6.72

Isoelectric Point (pI)

52.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 235
AasI GACNNNNNNGTC 1 cut(s) 47
Acc36I ACCTGC 1 cut(s) 235
AccII CGCG 2 cut(s) 159, 161
AciI CCGC 3 cut(s) 107, 188, 332
AclWI GGATC 1 cut(s) 290
AcoI YGGCCR 2 cut(s) 168, 344
AfiI CCNNNNNNNGG 5 cut(s) 28, 29, 43, 138, 279
AjnI CCWGG 1 cut(s) 36
AluBI AGCT 2 cut(s) 96, 252
AluI AGCT 2 cut(s) 96, 252
Alw21I GWGCWC 1 cut(s) 146
Alw44I GTGCAC 1 cut(s) 142
AlwI GGATC 1 cut(s) 290
Ama87I CYCGRG 2 cut(s) 43, 137
AoxI GGCC 6 cut(s) 34, 62, 168, 176, 324, 344
ApaLI GTGCAC 1 cut(s) 142
AspLEI GCGC 2 cut(s) 161, 163
AspS9I GGNCC 5 cut(s) 40, 63, 176, 256, 270
AsuC2I CCSGG 4 cut(s) 44, 45, 138, 139
AsuHPI GGTGA 2 cut(s) 223, 259
AvaI CYCGRG 2 cut(s) 43, 137
AvaII GGWCC 3 cut(s) 40, 256, 270
BaeGI GKGCMC 1 cut(s) 146
BalI TGGCCA 2 cut(s) 170, 346
Bbv12I GWGCWC 1 cut(s) 146
BciT130I CCWGG 1 cut(s) 38
BcnI CCSGG 4 cut(s) 44, 45, 138, 139
BfuAI ACCTGC 1 cut(s) 235
Bme1390I CCNGG 5 cut(s) 38, 44, 45, 138, 139
Bme18I GGWCC 3 cut(s) 40, 256, 270
BmeT110I CYCGRG 2 cut(s) 43, 137
BmgT120I GGNCC 5 cut(s) 40, 63, 176, 256, 270
BmiI GGNNCC 3 cut(s) 42, 177, 257
BmrFI CCNGG 5 cut(s) 38, 44, 45, 138, 139
Bpu10I CCTNAGC 1 cut(s) 328
BpuMI CCSGG 4 cut(s) 44, 45, 138, 139
Bsa29I ATCGAT 1 cut(s) 80
BsaJI CCNNGG 3 cut(s) 43, 137, 171
BsaXI ACNNNNNCTCC 1 cut(s) 326
Bsc4I CCNNNNNNNGG 5 cut(s) 28, 29, 43, 138, 279
BseBI CCWGG 1 cut(s) 38
BseCI ATCGAT 1 cut(s) 80
BseDI CCNNGG 3 cut(s) 43, 137, 171
BseLI CCNNNNNNNGG 5 cut(s) 28, 29, 43, 138, 279
BseMII CTCAG 1 cut(s) 322
BsePI GCGCGC 1 cut(s) 159
BseRI GAGGAG 1 cut(s) 68
BseSI GKGCMC 1 cut(s) 146
BseYI CCCAGC 1 cut(s) 252
Bsh1236I CGCG 2 cut(s) 159, 161
BshFI GGCC 6 cut(s) 36, 64, 170, 178, 326, 346
BshVI ATCGAT 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 146
BsiHKCI CYCGRG 2 cut(s) 43, 137
BsiSI CCGG 2 cut(s) 44, 138
BslFI GGGAC 1 cut(s) 5
BslI CCNNNNNNNGG 5 cut(s) 28, 29, 43, 138, 279
BsmFI GGGAC 1 cut(s) 5
BsnI GGCC 6 cut(s) 36, 64, 170, 178, 326, 346
BsoBI CYCGRG 2 cut(s) 43, 137
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 2 cut(s) 282, 304
BspACI CCGC 3 cut(s) 107, 188, 332
BspANI GGCC 6 cut(s) 36, 64, 170, 178, 326, 346
BspCNI CTCAG 1 cut(s) 321
BspDI ATCGAT 1 cut(s) 80
BspFNI CGCG 2 cut(s) 159, 161
BspHI TCATGA 1 cut(s) 285
BspLI GGNNCC 3 cut(s) 42, 177, 257
BspMI ACCTGC 1 cut(s) 235
BspPI GGATC 1 cut(s) 290
BssECI CCNNGG 3 cut(s) 43, 137, 171
BssHII GCGCGC 1 cut(s) 159
BssMI GATC 2 cut(s) 282, 304
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 1 cut(s) 292
Bst6I CTCTTC 1 cut(s) 332
BstC8I GCNNGC 2 cut(s) 146, 161
BstDEI CTNAG 2 cut(s) 308, 328
BstDSI CCRYGG 1 cut(s) 171
BstFNI CGCG 2 cut(s) 159, 161
BstHHI GCGC 2 cut(s) 161, 163
BstKTI GATC 2 cut(s) 285, 307
BstMBI GATC 2 cut(s) 282, 304
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNI CCWGG 1 cut(s) 38
BstSCI CCNGG 5 cut(s) 36, 42, 43, 136, 137
BstSLI GKGCMC 1 cut(s) 146
BstUI CGCG 2 cut(s) 159, 161
Bsu15I ATCGAT 1 cut(s) 80
BsuRI GGCC 6 cut(s) 36, 64, 170, 178, 326, 346
BsuTUI ATCGAT 1 cut(s) 80
BtgI CCRYGG 1 cut(s) 171
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 2 cut(s) 146, 161
CciI TCATGA 1 cut(s) 285
CfoI GCGC 2 cut(s) 161, 163
Cfr13I GGNCC 5 cut(s) 40, 63, 176, 256, 270
Cfr9I CCCGGG 2 cut(s) 43, 137
ClaI ATCGAT 1 cut(s) 80
CviAII CATG 1 cut(s) 286
CviJI RGCY 9 cut(s) 5, 36, 64, 96, 170, 178, 252, 326, 346
CviKI_1 RGCY 9 cut(s) 5, 36, 64, 96, 170, 178, 252, 326, 346
DdeI CTNAG 2 cut(s) 308, 328
DpnI GATC 2 cut(s) 284, 306
DpnII GATC 2 cut(s) 282, 304
DrdI GACNNNNNNGTC 1 cut(s) 47
DseDI GACNNNNNNGTC 1 cut(s) 47
EaeI YGGCCR 2 cut(s) 168, 344
Eam1104I CTCTTC 1 cut(s) 332
EarI CTCTTC 1 cut(s) 332
Eco147I AGGCCT 1 cut(s) 326
Eco47I GGWCC 3 cut(s) 40, 256, 270
Eco88I CYCGRG 2 cut(s) 43, 137
EcoO109I RGGNCCY 1 cut(s) 270
EcoRII CCWGG 1 cut(s) 36
FaeI CATG 1 cut(s) 289
FaiI YATR 2 cut(s) 222, 287
FaqI GGGAC 1 cut(s) 5
FatI CATG 1 cut(s) 285
GlaI GCGC 2 cut(s) 160, 162
GsaI CCCAGC 1 cut(s) 256
HaeIII GGCC 6 cut(s) 36, 64, 170, 178, 326, 346
HapII CCGG 2 cut(s) 44, 138
HhaI GCGC 2 cut(s) 161, 163
Hin1II CATG 1 cut(s) 289
Hin6I GCGC 2 cut(s) 159, 161
HinP1I GCGC 2 cut(s) 159, 161
HinfI GANTC 2 cut(s) 48, 217
HpaII CCGG 2 cut(s) 44, 138
HphI GGTGA 2 cut(s) 223, 259
Hpy166II GTNNAC 2 cut(s) 125, 144
Hpy188I TCNGA 1 cut(s) 152
Hpy188III TCNNGA 1 cut(s) 286
Hpy8I GTNNAC 2 cut(s) 125, 144
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 1 cut(s) 316
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4V TGCA 1 cut(s) 144
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 2 cut(s) 308, 328
Hsp92II CATG 1 cut(s) 289
HspAI GCGC 2 cut(s) 159, 161
Kzo9I GATC 2 cut(s) 282, 304
LmnI GCTCC 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 211
MalI GATC 2 cut(s) 284, 306
MboI GATC 2 cut(s) 282, 304
MboII GAAGA 1 cut(s) 349
MhlI GDGCHC 1 cut(s) 146
MlsI TGGCCA 2 cut(s) 170, 346
MluNI TGGCCA 2 cut(s) 170, 346
MlyI GAGTC 1 cut(s) 57
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 5 cut(s) 46, 174, 226, 261, 333
Mox20I TGGCCA 2 cut(s) 170, 346
MscI TGGCCA 2 cut(s) 170, 346
MseI TTAA 1 cut(s) 119
Msp20I TGGCCA 2 cut(s) 170, 346
MspI CCGG 2 cut(s) 44, 138
MspR9I CCNGG 5 cut(s) 38, 44, 45, 138, 139
MvaI CCWGG 1 cut(s) 38
MvnI CGCG 2 cut(s) 159, 161
MwoI GCNNNNNNNGC 1 cut(s) 167
NciI CCSGG 4 cut(s) 44, 45, 138, 139
NdeII GATC 2 cut(s) 282, 304
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 3 cut(s) 42, 177, 257
NmuCI GTSAC 1 cut(s) 211
PagI TCATGA 1 cut(s) 285
PaqCI CACCTGC 1 cut(s) 235
PauI GCGCGC 1 cut(s) 159
PceI AGGCCT 1 cut(s) 326
PfeI GAWTC 1 cut(s) 217
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PpuMI RGGWCCY 1 cut(s) 270
Psp5II RGGWCCY 1 cut(s) 270
Psp6I CCWGG 1 cut(s) 36
PspFI CCCAGC 1 cut(s) 252
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 3 cut(s) 42, 177, 257
PspPI GGNCC 5 cut(s) 40, 63, 176, 256, 270
PspPPI RGGWCCY 1 cut(s) 270
PteI GCGCGC 1 cut(s) 159
SaqAI TTAA 1 cut(s) 119
Sau3AI GATC 2 cut(s) 282, 304
Sau96I GGNCC 5 cut(s) 40, 63, 176, 256, 270
SchI GAGTC 1 cut(s) 57
ScrFI CCNGG 5 cut(s) 38, 44, 45, 138, 139
SduI GDGCHC 1 cut(s) 146
SetI ASST 7 cut(s) 98, 213, 237, 249, 254, 272, 344
SinI GGWCC 3 cut(s) 40, 256, 270
SmaI CCCGGG 2 cut(s) 45, 139
SseBI AGGCCT 1 cut(s) 326
SsiI CCGC 3 cut(s) 107, 188, 332
StuI AGGCCT 1 cut(s) 326
StyD4I CCNGG 5 cut(s) 36, 42, 43, 136, 137
TaaI ACNGT 1 cut(s) 292
TaqI TCGA 3 cut(s) 51, 80, 240
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TseFI GTSAC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 209
TspMI CCCGGG 2 cut(s) 43, 137
VneI GTGCAC 1 cut(s) 142
VpaK11BI GGWCC 3 cut(s) 40, 256, 270
XmaI CCCGGG 2 cut(s) 43, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.