Rh3AG298400

Protein terminal ear1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0009740
Physical Location & Seq
Reverse (-)
36442302 .. 36454532
12231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG298400.1

Sequence Viewer

Length: 429 bp
ATGGCATATGGATCGGGTCCTTGGTCCGCCCAGCTCTTGGGATTGCAGCGTCGCTATTATTTTTGGTCTCGATCGGTTGAATTCGAAATTGGATTGGTCATCGCCGTTGACAACTACAGTGGAGTAGAGGTCGAATTTCGGCGGAATTTTTCAGTGGATGGTGCTGGTCGGATCCTTTTCAGTACATGCAGAGCCGCCGAGCACCAAGCTTTGGATCCGACGGCAGTCCACGGCTTCAAAGAGTTCTCGGATCTGTCCGAGGAGGCGTTTGGCCAGGTGAGGTGGGTTCAGACGGAGAGGTCCTGCGACGGGATCGTGACCGTCCATTTTGACGATCTCAGGCATGCAGAGAAGGCCTTGGCGGAGAAGAGGTGGCCAAGGGAGAACATAAATGAAATATCTGCTGACAATGAGCTATCCACATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 RRM_2

Protein Analysis

142

Amino Acids

16.22

Weight (kDa)

5.07

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 298
AccB7I CCANNNNNTGG 2 cut(s) 37, 211
AciI CCGC 4 cut(s) 27, 142, 195, 362
AclWI GGATC 7 cut(s) 19, 166, 179, 209, 222, 258, 320
AcoI YGGCCR 2 cut(s) 271, 374
AcsI RAATTY 3 cut(s) 80, 134, 145
AfaI GTAC 1 cut(s) 184
AfiI CCNNNNNNNGG 3 cut(s) 37, 211, 309
AgsI TTSAA 2 cut(s) 80, 238
AjnI CCWGG 1 cut(s) 273
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AluBI AGCT 3 cut(s) 34, 209, 415
AluI AGCT 3 cut(s) 34, 209, 415
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 72
AlwI GGATC 7 cut(s) 19, 166, 179, 209, 222, 258, 320
AoxI GGCC 3 cut(s) 271, 354, 374
ApeKI GCWGC 1 cut(s) 46
ApoI RAATTY 3 cut(s) 80, 134, 145
AspS9I GGNCC 3 cut(s) 17, 24, 300
AsuHPI GGTGA 1 cut(s) 289
AsuII TTCGAA 1 cut(s) 84
AvaII GGWCC 3 cut(s) 17, 24, 300
BalI TGGCCA 2 cut(s) 273, 376
BamHI GGATCC 2 cut(s) 171, 214
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 58
BccI CCATC 1 cut(s) 152
BceAI ACGGC 3 cut(s) 89, 237, 247
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 275
BcoDI GTCTC 1 cut(s) 72
BfmI CTRYAG 1 cut(s) 115
BisI GCNGC 2 cut(s) 47, 195
BlsI GCNGC 2 cut(s) 48, 196
Bme1390I CCNGG 1 cut(s) 275
Bme18I GGWCC 3 cut(s) 17, 24, 300
BmgT120I GGNCC 3 cut(s) 17, 24, 300
BmiI GGNNCC 3 cut(s) 18, 173, 216
BmrFI CCNGG 1 cut(s) 275
BoxI GACNNNNGTC 1 cut(s) 224
Bpu14I TTCGAA 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 72
BsaJI CCNNGG 5 cut(s) 20, 229, 258, 357, 377
BsaXI ACNNNNNCTCC 4 cut(s) 114, 144, 356, 386
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 211, 309
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 5 cut(s) 20, 229, 258, 357, 377
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 3 cut(s) 37, 211, 309
BseMII CTCAG 1 cut(s) 352
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 1 cut(s) 58
BseYI CCCAGC 1 cut(s) 30
Bsh1285I CGRYCG 1 cut(s) 74
BshFI GGCC 3 cut(s) 273, 356, 376
BsiEI CGRYCG 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 204
BslI CCNNNNNNNGG 3 cut(s) 37, 211, 309
BsmAI GTCTC 1 cut(s) 72
BsnI GGCC 3 cut(s) 273, 356, 376
Bso31I GGTCTC 1 cut(s) 72
Bsp119I TTCGAA 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 7 cut(s) 11, 71, 171, 214, 250, 312, 334
BspACI CCGC 4 cut(s) 27, 142, 195, 362
BspANI GGCC 3 cut(s) 273, 356, 376
BspCNI CTCAG 1 cut(s) 351
BspLI GGNNCC 3 cut(s) 18, 173, 216
BspPI GGATC 7 cut(s) 19, 166, 179, 209, 222, 258, 320
BspT104I TTCGAA 1 cut(s) 84
BspTNI GGTCTC 1 cut(s) 72
BssECI CCNNGG 5 cut(s) 20, 229, 258, 357, 377
BssMI GATC 7 cut(s) 11, 71, 171, 214, 250, 312, 334
BssT1I CCWWGG 3 cut(s) 20, 357, 377
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 2 cut(s) 119, 322
Bst6I CTCTTC 1 cut(s) 362
BstBI TTCGAA 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 1 cut(s) 338
BstDSI CCRYGG 1 cut(s) 229
BstF5I GGATG 1 cut(s) 163
BstKTI GATC 7 cut(s) 14, 74, 174, 217, 253, 315, 337
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 7 cut(s) 11, 71, 171, 214, 250, 312, 334
BstMCI CGRYCG 1 cut(s) 74
BstMWI GCNNNNNNNGC 1 cut(s) 353
BstNI CCWGG 1 cut(s) 275
BstNSI RCATGY 2 cut(s) 189, 347
BstPAI GACNNNNGTC 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 273
BstSFI CTRYAG 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 58
BstX2I RGATCY 3 cut(s) 171, 214, 250
BstYI RGATCY 3 cut(s) 171, 214, 250
BsuRI GGCC 3 cut(s) 273, 356, 376
BtgI CCRYGG 1 cut(s) 229
BtgZI GCGATG 1 cut(s) 85
BtsCI GGATG 1 cut(s) 163
BtsIMutI CAGTG 2 cut(s) 124, 159
Cac8I GCNNGC 1 cut(s) 345
Cfr13I GGNCC 3 cut(s) 17, 24, 300
CseI GACGC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 183
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviAII CATG 2 cut(s) 186, 344
CviJI RGCY 8 cut(s) 34, 194, 209, 234, 273, 356, 376, 415
CviKI_1 RGCY 8 cut(s) 34, 194, 209, 234, 273, 356, 376, 415
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 1 cut(s) 338
DpnI GATC 7 cut(s) 13, 73, 173, 216, 252, 314, 336
DpnII GATC 7 cut(s) 11, 71, 171, 214, 250, 312, 334
DrdI GACNNNNNNGTC 1 cut(s) 298
DseDI GACNNNNNNGTC 1 cut(s) 298
EaeI YGGCCR 2 cut(s) 271, 374
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
EciI GGCGGA 3 cut(s) 16, 157, 377
Eco130I CCWWGG 3 cut(s) 20, 357, 377
Eco147I AGGCCT 1 cut(s) 356
Eco31I GGTCTC 1 cut(s) 72
Eco47I GGWCC 3 cut(s) 17, 24, 300
EcoO109I RGGNCCY 2 cut(s) 17, 300
EcoRI GAATTC 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 273
EcoT14I CCWWGG 3 cut(s) 20, 357, 377
ErhI CCWWGG 3 cut(s) 20, 357, 377
FaeI CATG 2 cut(s) 189, 347
FaiI YATR 6 cut(s) 7, 9, 187, 345, 389, 424
FatI CATG 2 cut(s) 185, 343
FauNDI CATATG 1 cut(s) 7
Fnu4HI GCNGC 2 cut(s) 47, 195
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 2 cut(s) 47, 195
GluI GCNGC 2 cut(s) 47, 195
GsaI CCCAGC 1 cut(s) 34
HaeIII GGCC 3 cut(s) 273, 356, 376
HgaI GACGC 1 cut(s) 38
Hin1II CATG 2 cut(s) 189, 347
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 207
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 2 cut(s) 109, 229
Hpy188I TCNGA 5 cut(s) 171, 219, 250, 259, 291
Hpy188III TCNNGA 2 cut(s) 69, 316
Hpy8I GTNNAC 2 cut(s) 109, 229
Hpy99I CGWCG 3 cut(s) 54, 223, 311
HpyAV CCTTC 1 cut(s) 346
HpyCH4III ACNGT 2 cut(s) 119, 322
HpyCH4V TGCA 3 cut(s) 46, 189, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 353
HpyF3I CTNAG 1 cut(s) 338
Hsp92II CATG 2 cut(s) 189, 347
Kzo9I GATC 7 cut(s) 11, 71, 171, 214, 250, 312, 334
LpnPI CCDG 6 cut(s) 44, 150, 260, 287, 316, 325
Lsp1109I GCAGC 1 cut(s) 58
MaeIII GTNAC 1 cut(s) 316
MalI GATC 7 cut(s) 13, 73, 173, 216, 252, 314, 336
MboI GATC 7 cut(s) 11, 71, 171, 214, 250, 312, 334
MboII GAAGA 1 cut(s) 379
MflI RGATCY 3 cut(s) 171, 214, 250
MhlI GDGCHC 1 cut(s) 204
MlsI TGGCCA 2 cut(s) 273, 376
MluCI AATT 4 cut(s) 80, 87, 134, 145
MluNI TGGCCA 2 cut(s) 273, 376
MmeI TCCRAC 2 cut(s) 149, 242
MnlI CCTC 6 cut(s) 121, 253, 256, 273, 291, 363
Mox20I TGGCCA 2 cut(s) 273, 376
MscI TGGCCA 2 cut(s) 273, 376
Msp20I TGGCCA 2 cut(s) 273, 376
MspR9I CCNGG 1 cut(s) 275
MvaI CCWGG 1 cut(s) 275
MwoI GCNNNNNNNGC 1 cut(s) 353
NdeI CATATG 1 cut(s) 7
NdeII GATC 7 cut(s) 11, 71, 171, 214, 250, 312, 334
NlaIII CATG 2 cut(s) 189, 347
NlaIV GGNNCC 3 cut(s) 18, 173, 216
NmeAIII GCCGAG 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 316
NspI RCATGY 2 cut(s) 189, 347
NspV TTCGAA 1 cut(s) 84
PaeI GCATGC 1 cut(s) 347
PceI AGGCCT 1 cut(s) 356
PflMI CCANNNNNTGG 2 cut(s) 37, 211
PkrI GCNGC 2 cut(s) 48, 196
Ple19I CGATCG 1 cut(s) 74
PpuMI RGGWCCY 2 cut(s) 17, 300
PshAI GACNNNNGTC 1 cut(s) 224
Psp5II RGGWCCY 2 cut(s) 17, 300
Psp6I CCWGG 1 cut(s) 273
PspFI CCCAGC 1 cut(s) 30
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 3 cut(s) 18, 173, 216
PspPI GGNCC 3 cut(s) 17, 24, 300
PspPPI RGGWCCY 2 cut(s) 17, 300
PsuI RGATCY 3 cut(s) 171, 214, 250
PvuI CGATCG 1 cut(s) 74
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
SatI GCNGC 2 cut(s) 47, 195
Sau3AI GATC 7 cut(s) 11, 71, 171, 214, 250, 312, 334
Sau96I GGNCC 3 cut(s) 17, 24, 300
ScrFI CCNGG 1 cut(s) 275
SduI GDGCHC 1 cut(s) 204
SetI ASST 8 cut(s) 36, 132, 211, 279, 284, 302, 374, 417
SfcI CTRYAG 1 cut(s) 115
SfuI TTCGAA 1 cut(s) 84
SinI GGWCC 3 cut(s) 17, 24, 300
SphI GCATGC 1 cut(s) 347
Sse9I AATT 4 cut(s) 80, 87, 134, 145
SseBI AGGCCT 1 cut(s) 356
SsiI CCGC 4 cut(s) 27, 142, 195, 362
StuI AGGCCT 1 cut(s) 356
StyD4I CCNGG 1 cut(s) 273
StyI CCWWGG 3 cut(s) 20, 357, 377
TaaI ACNGT 2 cut(s) 119, 322
TaqI TCGA 3 cut(s) 70, 84, 132
TasI AATT 4 cut(s) 80, 87, 134, 145
TatI WGTACW 1 cut(s) 182
TauI GCSGC 1 cut(s) 197
TscAI CASTG 2 cut(s) 124, 159
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 1 cut(s) 408
TspGWI ACGGA 1 cut(s) 308
TspRI CASTG 2 cut(s) 124, 159
Van91I CCANNNNNTGG 2 cut(s) 37, 211
VpaK11BI GGWCC 3 cut(s) 17, 24, 300
XapI RAATTY 3 cut(s) 80, 134, 145
XceI RCATGY 2 cut(s) 189, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.