Rmu_sc0012746.1_g000019

Protein terminal ear1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012746.1
OG0009740
Physical Location & Seq
Forward (+)
56817 .. 57230
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012746.1_g000019.1.cds

Sequence Viewer

Length: 414 bp
ctggtggcgagagtcgaggagttcaggcccagaaatagaaacctgataccctttttcaacccaccaccaccaccacctctaccaactaagtttattatccctacccaagtgcacgccccgatcctgcctctgggcgtggggccaactcaggcggtgcagttgaggccggtaccatgtgatgtcagcgaggtgatgattcggagggagttggaggctttcgagcaggtgaggtgggtcccgatagagaggccctgtgacgggatcatgaacgtccatttctataatctcaggcatgtagataagaccttggcggagatttgggacaagcagatgcaacaccaacccacccggcctcttcctggaggggaatggacggctcgtattggacgaccaagatggctgcggtggacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 RRM_2

Protein Analysis

137

Amino Acids

16.02

Weight (kDa)

10.01

Isoelectric Point (pI)

66.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 214
Acc36I ACCTGC 1 cut(s) 214
Acc65I GGTACC 1 cut(s) 169
AccB1I GGYRCC 1 cut(s) 169
AciI CCGC 3 cut(s) 152, 311, 403
AclWI GGATC 2 cut(s) 115, 269
AfaI GTAC 1 cut(s) 171
AfiI CCNNNNNNNGG 4 cut(s) 130, 257, 258, 359
AgsI TTSAA 1 cut(s) 58
AjnI CCWGG 1 cut(s) 358
Alw21I GWGCWC 1 cut(s) 114
Alw44I GTGCAC 1 cut(s) 110
AlwI GGATC 2 cut(s) 115, 269
AoxI GGCC 5 cut(s) 26, 140, 164, 248, 350
ApaLI GTGCAC 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 400
Asp718I GGTACC 1 cut(s) 169
AspS9I GGNCC 5 cut(s) 27, 140, 235, 249, 408
AsuC2I CCSGG 1 cut(s) 349
AsuHPI GGTGA 2 cut(s) 202, 238
AvaII GGWCC 2 cut(s) 235, 408
BaeGI GKGCMC 1 cut(s) 114
BanI GGYRCC 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 387
BccI CCATC 1 cut(s) 390
BceAI ACGGC 1 cut(s) 390
BciT130I CCWGG 1 cut(s) 360
BcnI CCSGG 1 cut(s) 349
BfaI CTAG 1 cut(s) 412
BfuAI ACCTGC 1 cut(s) 214
BisI GCNGC 1 cut(s) 401
BlsI GCNGC 1 cut(s) 402
Bme1390I CCNGG 2 cut(s) 349, 360
Bme18I GGWCC 2 cut(s) 235, 408
BmgT120I GGNCC 5 cut(s) 27, 140, 235, 249, 408
BmiI GGNNCC 4 cut(s) 141, 171, 236, 237
BmrFI CCNGG 2 cut(s) 349, 360
BmsI GCATC 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 381
BpuMI CCSGG 1 cut(s) 349
BsaJI CCNNGG 1 cut(s) 306
Bsc4I CCNNNNNNNGG 4 cut(s) 130, 257, 258, 359
Bse118I RCCGGY 1 cut(s) 166
BseBI CCWGG 1 cut(s) 360
BseDI CCNNGG 1 cut(s) 306
BseLI CCNNNNNNNGG 4 cut(s) 130, 257, 258, 359
BseMII CTCAG 2 cut(s) 161, 301
BseRI GAGGAG 1 cut(s) 32
BseSI GKGCMC 1 cut(s) 114
BseXI GCAGC 1 cut(s) 387
BsgI GTGCAG 1 cut(s) 176
BshFI GGCC 5 cut(s) 28, 142, 166, 250, 352
BshNI GGYRCC 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 114
BsiSI CCGG 2 cut(s) 167, 349
BslFI GGGAC 2 cut(s) 221, 335
BslI CCNNNNNNNGG 4 cut(s) 130, 257, 258, 359
BsmFI GGGAC 2 cut(s) 221, 335
BsnI GGCC 5 cut(s) 28, 142, 166, 250, 352
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 2 cut(s) 120, 261
BspACI CCGC 3 cut(s) 152, 311, 403
BspANI GGCC 5 cut(s) 28, 142, 166, 250, 352
BspCNI CTCAG 2 cut(s) 160, 300
BspHI TCATGA 1 cut(s) 264
BspLI GGNNCC 4 cut(s) 141, 171, 236, 237
BspMI ACCTGC 1 cut(s) 214
BspPI GGATC 2 cut(s) 115, 269
BspT107I GGYRCC 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 166
BssAI RCCGGY 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 2 cut(s) 120, 261
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 360
Bst6I CTCTTC 1 cut(s) 360
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 3 cut(s) 87, 147, 287
BstKTI GATC 2 cut(s) 123, 264
BstMBI GATC 2 cut(s) 120, 261
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstNI CCWGG 1 cut(s) 360
BstNSI RCATGY 1 cut(s) 296
BstSCI CCNGG 2 cut(s) 347, 358
BstSLI GKGCMC 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 387
BsuRI GGCC 5 cut(s) 28, 142, 166, 250, 352
BveI ACCTGC 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 114
CciI TCATGA 1 cut(s) 264
Cfr10I RCCGGY 1 cut(s) 166
Cfr13I GGNCC 5 cut(s) 27, 140, 235, 249, 408
Csp6I GTAC 1 cut(s) 170
CviAII CATG 3 cut(s) 174, 265, 293
CviJI RGCY 8 cut(s) 28, 142, 166, 215, 250, 352, 377, 400
CviKI_1 RGCY 8 cut(s) 28, 142, 166, 215, 250, 352, 377, 400
CviQI GTAC 1 cut(s) 170
DdeI CTNAG 3 cut(s) 87, 147, 287
DpnI GATC 2 cut(s) 122, 263
DpnII GATC 2 cut(s) 120, 261
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
EciI GGCGGA 1 cut(s) 326
Eco130I CCWWGG 1 cut(s) 306
Eco47I GGWCC 2 cut(s) 235, 408
EcoO109I RGGNCCY 2 cut(s) 235, 249
EcoRII CCWGG 1 cut(s) 358
EcoT14I CCWWGG 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 3 cut(s) 177, 268, 296
FaiI YATR 4 cut(s) 175, 266, 282, 294
FaqI GGGAC 2 cut(s) 221, 335
FatI CATG 3 cut(s) 173, 264, 292
Fnu4HI GCNGC 1 cut(s) 401
Fsp4HI GCNGC 1 cut(s) 401
FspBI CTAG 1 cut(s) 412
GluI GCNGC 1 cut(s) 401
GsuI CTGGAG 1 cut(s) 381
HaeIII GGCC 5 cut(s) 28, 142, 166, 250, 352
HapII CCGG 2 cut(s) 167, 349
Hin1II CATG 3 cut(s) 177, 268, 296
HinfI GANTC 2 cut(s) 12, 196
HpaII CCGG 2 cut(s) 167, 349
HphI GGTGA 2 cut(s) 202, 238
Hpy166II GTNNAC 2 cut(s) 112, 408
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 2 cut(s) 238, 265
Hpy8I GTNNAC 2 cut(s) 112, 408
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 3 cut(s) 112, 157, 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpyF3I CTNAG 3 cut(s) 87, 147, 287
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 3 cut(s) 177, 268, 296
KflI GGGWCCC 1 cut(s) 235
KpnI GGTACC 1 cut(s) 173
Kzo9I GATC 2 cut(s) 120, 261
Lsp1109I GCAGC 1 cut(s) 387
LweI GCATC 1 cut(s) 321
MaeI CTAG 1 cut(s) 412
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 254
MalI GATC 2 cut(s) 122, 263
MboI GATC 2 cut(s) 120, 261
MboII GAAGA 1 cut(s) 347
MhlI GDGCHC 1 cut(s) 114
MlyI GAGTC 1 cut(s) 21
MmeI TCCRAC 1 cut(s) 189
MspI CCGG 2 cut(s) 167, 349
MspR9I CCNGG 2 cut(s) 349, 360
MvaI CCWGG 1 cut(s) 360
MwoI GCNNNNNNNGC 1 cut(s) 163
NciI CCSGG 1 cut(s) 349
NdeII GATC 2 cut(s) 120, 261
NlaIII CATG 3 cut(s) 177, 268, 296
NlaIV GGNNCC 4 cut(s) 141, 171, 236, 237
NmuCI GTSAC 1 cut(s) 254
NspI RCATGY 1 cut(s) 296
PagI TCATGA 1 cut(s) 264
PaqCI CACCTGC 1 cut(s) 214
PcsI WCGNNNNNNNCGW 1 cut(s) 385
PfeI GAWTC 1 cut(s) 196
PfoI TCCNGGA 1 cut(s) 358
PkrI GCNGC 1 cut(s) 402
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
PpuMI RGGWCCY 1 cut(s) 235
Psp5II RGGWCCY 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 358
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 4 cut(s) 141, 171, 236, 237
PspPI GGNCC 5 cut(s) 27, 140, 235, 249, 408
PspPPI RGGWCCY 1 cut(s) 235
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
SatI GCNGC 1 cut(s) 401
Sau3AI GATC 2 cut(s) 120, 261
Sau96I GGNCC 5 cut(s) 27, 140, 235, 249, 408
SchI GAGTC 1 cut(s) 21
ScrFI CCNGG 2 cut(s) 349, 360
SduI GDGCHC 1 cut(s) 114
SetI ASST 8 cut(s) 45, 79, 192, 228, 233, 273, 308, 413
SfaNI GCATC 1 cut(s) 321
SinI GGWCC 2 cut(s) 235, 408
SsiI CCGC 3 cut(s) 152, 311, 403
SspMI CTAG 1 cut(s) 412
StyD4I CCNGG 2 cut(s) 347, 358
StyI CCWWGG 1 cut(s) 306
TaiI ACGT 1 cut(s) 273
TaqI TCGA 2 cut(s) 15, 219
TfiI GAWTC 1 cut(s) 196
TseFI GTSAC 1 cut(s) 254
TseI GCWGC 1 cut(s) 400
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 1 cut(s) 281
VneI GTGCAC 1 cut(s) 110
VpaK11BI GGWCC 2 cut(s) 235, 408
XceI RCATGY 1 cut(s) 296
XspI CTAG 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.