Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009740

Physical Location & Seq

Genomic Coordinates Forward (+)

25787251 .. 25788466

Gene Structure 1216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00186450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGATGAGGCTGATTGATGCAGGGTCCAGGATTGTTTTCGTAGCTGTCAACTCCGATATTGTTGTTACTGATGAAGAGATCGAGTTCGTTGGTTTGTCGGAGGTGTTGTCTACGGAAGTGGTGGTGGCAACAGCCGTGGAAGTGGAGGTGGCAACAGCGGAGGAGGCGGCTGCGGAGGTGGTGGCTGGGATCGTGGATCTAATGGTGGGAGCTGGAGGAGTATTACCTCAGAAATGCAGCAAACTCTCATCTCTTCCTTTTGCTTCAATTTGCTGGCTTTCTCCTCCAAAGTCCTTGGTGAAAAATTCAAGTGTGGGAAACATGGCCCAGTTATCAAATTTTCTTTTAGCTTCAGAGGTAGCCACCCAGAAAATTGTGGGTATCTTGGGTTTCTTGTATCCTGCAATGAAAGGAAGGAAACCATTCTTGAGCTCCCAATCCCAGTTAAATTCCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

15.96

Weight (kDa)

4.67

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009740)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0428301
rosa_laevigata	RLG00000003070 RLG00000007693 RLG00000026855
rosa_multiflora	Rmu_sc0000745.1_g000003 Rmu_sc0001524.1_g000052 Rmu_sc0002841.1_g000002 Rmu_sc0003153.1_g000010 Rmu_sc0003413.1_g000025 Rmu_sc0012746.1_g000019 Rmu_sc0020260.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186450
rosa_samantha	Rh1CG087900 Rh2AG101200 Rh2AG120600 Rh3AG298400 Rh3BG370900 Rh5AG245100 Rh5DG552400 Rh6CG347700 Rh7CG179600 Rh7CG189200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	110
AciI	CCGC	3 cut(s)	158, 167, 173
AclWI	GGATC	2 cut(s)	197, 204
AcsI	RAATTY	3 cut(s)	304, 337, 448
AcuI	CTGAAG	1 cut(s)	336
AgsI	TTSAA	2 cut(s)	267, 309
AjnI	CCWGG	1 cut(s)	26
AluBI	AGCT	4 cut(s)	44, 212, 350, 432
AluI	AGCT	4 cut(s)	44, 212, 350, 432
Alw21I	GWGCWC	1 cut(s)	434
AlwI	GGATC	2 cut(s)	197, 204
AoxI	GGCC	1 cut(s)	324
ApeKI	GCWGC	2 cut(s)	170, 237
ApoI	RAATTY	3 cut(s)	304, 337, 448
Asp700I	GAANNNNTTC	1 cut(s)	422
AspS9I	GGNCC	2 cut(s)	24, 325
AsuHPI	GGTGA	1 cut(s)	310
AvaII	GGWCC	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	434
Bbv12I	GWGCWC	1 cut(s)	434
BbvI	GCAGC	2 cut(s)	157, 249
BceAI	ACGGC	1 cut(s)	119
BciT130I	CCWGG	1 cut(s)	28
BciVI	GTATCC	1 cut(s)	408
BfuI	GTATCC	1 cut(s)	408
BisI	GCNGC	3 cut(s)	168, 171, 238
BlsI	GCNGC	3 cut(s)	169, 172, 239
Bme1390I	CCNGG	1 cut(s)	28
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	24, 325
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	28
BmrI	ACTGGG	2 cut(s)	322, 436
BmsI	GCATC	1 cut(s)	7
BmuI	ACTGGG	2 cut(s)	322, 436
BpmI	CTGGAG	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	448
BsaJI	CCNNGG	2 cut(s)	135, 294
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bse1I	ACTGG	2 cut(s)	328, 442
Bse3DI	GCAATG	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	28
BseDI	CCNNGG	2 cut(s)	135, 294
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	2 cut(s)	328, 442
BseRI	GAGGAG	3 cut(s)	176, 231, 273
BseXI	GCAGC	2 cut(s)	157, 249
BseYI	CCCAGC	1 cut(s)	185
BshFI	GGCC	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	434
BsnI	GGCC	1 cut(s)	326
Bsp1286I	GDGCHC	1 cut(s)	434
Bsp143I	GATC	3 cut(s)	78, 189, 196
BspACI	CCGC	3 cut(s)	158, 167, 173
BspANI	GGCC	1 cut(s)	326
BspCNI	CTCAG	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	25
BspPI	GGATC	2 cut(s)	197, 204
BsrDI	GCAATG	1 cut(s)	411
BsrI	ACTGG	2 cut(s)	328, 442
BssECI	CCNNGG	2 cut(s)	135, 294
BssMI	GATC	3 cut(s)	78, 189, 196
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	1 cut(s)	28
Bst6I	CTCTTC	2 cut(s)	69, 258
BstC8I	GCNNGC	1 cut(s)	275
BstDEI	CTNAG	1 cut(s)	228
BstDSI	CCRYGG	1 cut(s)	135
BstKTI	GATC	3 cut(s)	81, 192, 199
BstMBI	GATC	3 cut(s)	78, 189, 196
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	1 cut(s)	28
BstSCI	CCNGG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	157, 249
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BsuI	GTATCC	1 cut(s)	408
BsuRI	GGCC	1 cut(s)	326
BtgI	CCRYGG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	275
Cfr13I	GGNCC	2 cut(s)	24, 325
CspCI	CAANNNNNGTGG	2 cut(s)	117, 152
CviAII	CATG	1 cut(s)	322
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	3 cut(s)	80, 191, 198
DpnII	GATC	3 cut(s)	78, 189, 196
Eam1104I	CTCTTC	2 cut(s)	69, 258
EarI	CTCTTC	2 cut(s)	69, 258
Ecl136II	GAGCTC	1 cut(s)	432
Eco130I	CCWWGG	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	434
Eco47I	GGWCC	1 cut(s)	24
Eco53kI	GAGCTC	1 cut(s)	432
Eco57I	CTGAAG	1 cut(s)	336
EcoICRI	GAGCTC	1 cut(s)	432
EcoRII	CCWGG	1 cut(s)	26
EcoT14I	CCWWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	434
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	1 cut(s)	325
FaiI	YATR	1 cut(s)	323
FatI	CATG	1 cut(s)	321
FblI	GTMKAC	1 cut(s)	110
Fnu4HI	GCNGC	3 cut(s)	168, 171, 238
FriOI	GRGCYC	1 cut(s)	434
Fsp4HI	GCNGC	3 cut(s)	168, 171, 238
GluI	GCNGC	3 cut(s)	168, 171, 238
GsaI	CCCAGC	1 cut(s)	189
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	326
Hin1II	CATG	1 cut(s)	325
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	2 cut(s)	49, 111
Hpy188I	TCNGA	4 cut(s)	55, 100, 231, 355
Hpy188III	TCNNGA	1 cut(s)	427
Hpy8I	GTNNAC	2 cut(s)	49, 111
HpyAV	CCTTC	1 cut(s)	408
HpyCH4V	TGCA	3 cut(s)	20, 237, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	78, 189, 196
LmnI	GCTCC	2 cut(s)	209, 437
Lsp1109I	GCAGC	2 cut(s)	157, 249
LweI	GCATC	1 cut(s)	7
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	3 cut(s)	80, 191, 198
MboI	GATC	3 cut(s)	78, 189, 196
MboII	GAAGA	2 cut(s)	86, 245
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	434
MluCI	AATT	5 cut(s)	267, 304, 337, 372, 448
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	9 cut(s)	94, 139, 154, 157, 169, 209, 237, 294, 349
MroXI	GAANNNNTTC	1 cut(s)	422
MseI	TTAA	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	28
MvaI	CCWGG	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	164
NdeII	GATC	3 cut(s)	78, 189, 196
NlaIII	CATG	1 cut(s)	325
NlaIV	GGNNCC	1 cut(s)	25
PdmI	GAANNNNTTC	1 cut(s)	422
PfoI	TCCNGGA	1 cut(s)	26
PkrI	GCNGC	3 cut(s)	169, 172, 239
Psp124BI	GAGCTC	1 cut(s)	434
Psp6I	CCWGG	1 cut(s)	26
PspFI	CCCAGC	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	26
PspN4I	GGNNCC	1 cut(s)	25
PspPI	GGNCC	2 cut(s)	24, 325
PsuI	RGATCY	1 cut(s)	196
SacI	GAGCTC	1 cut(s)	434
SaqAI	TTAA	1 cut(s)	446
SatI	GCNGC	3 cut(s)	168, 171, 238
Sau3AI	GATC	3 cut(s)	78, 189, 196
Sau96I	GGNCC	2 cut(s)	24, 325
ScrFI	CCNGG	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	434
SetI	ASST	9 cut(s)	46, 105, 150, 180, 214, 229, 352, 360, 434
SfaNI	GCATC	1 cut(s)	7
SinI	GGWCC	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
Sse9I	AATT	5 cut(s)	267, 304, 337, 372, 448
SsiI	CCGC	3 cut(s)	158, 167, 173
SstI	GAGCTC	1 cut(s)	434
StyD4I	CCNGG	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	294
TaqI	TCGA	1 cut(s)	81
TasI	AATT	5 cut(s)	267, 304, 337, 372, 448
TauI	GCSGC	1 cut(s)	170
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TseI	GCWGC	2 cut(s)	170, 237
TspDTI	ATGAA	2 cut(s)	87, 422
TspGWI	ACGGA	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	24
XapI	RAATTY	3 cut(s)	304, 337, 448
XmiI	GTMKAC	1 cut(s)	110
XmnI	GAANNNNTTC	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.