Rh2AG101200

Protein terminal ear1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0009740
Physical Location & Seq
Reverse (-)
8616991 .. 8617437
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG101200.1

Sequence Viewer

Length: 447 bp
ATGGCTAAAACCGGTTTCGTCCCATTTTCGGGTGGCCTAGACCCGGGAGTCAAGGAGTTCAGGCCCAGAAACACAAAATCGATACCCCTTTTCAGCCCACTACCACCGCCTACCACACTAAGTTTACTATCCCTACCCGGGTGCAAGCTCCGATTTCGCTCGCCTCCGACCGCGGGGCCGACTCGGGAGGTGCCGTGTGACGTCAGTGAGGTGACTATTCAGAGGGAGTTGGTGGCGTTCGAGCAGGTGAGGTGGGTCCAGATGGAGAGGTCCTGCGATGGGATCGTGACCGTCCATTTTTACTATCTCAGGCAAGCAGAGAAGGCCTTGGCGGAGACGAGGTGGCCAAGGTGTGTTATTGTGTTTGGGTATGCGGTTAATCATGGATTTGGGAGTGTGAATTTGGAGAGGTGGAGGAATTTTGTGGGGGAGATTGGCTCTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 RRM_2

Protein Analysis

148

Amino Acids

16.65

Weight (kDa)

9.5

Isoelectric Point (pI)

54.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 235
AasI GACNNNNNNGTC 1 cut(s) 47
AatII GACGTC 1 cut(s) 204
Acc36I ACCTGC 1 cut(s) 235
AccB1I GGYRCC 1 cut(s) 190
AccII CGCG 1 cut(s) 173
AciI CCGC 5 cut(s) 107, 171, 173, 332, 374
AclWI GGATC 1 cut(s) 290
AcoI YGGCCR 1 cut(s) 344
AcsI RAATTY 2 cut(s) 400, 418
AcyI GRCGYC 1 cut(s) 201
AfiI CCNNNNNNNGG 6 cut(s) 28, 29, 43, 138, 173, 279
AgeI ACCGGT 1 cut(s) 11
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 329
AlwI GGATC 1 cut(s) 290
Ama87I CYCGRG 3 cut(s) 43, 137, 183
AoxI GGCC 5 cut(s) 34, 62, 176, 324, 344
ApoI RAATTY 2 cut(s) 400, 418
AsiGI ACCGGT 1 cut(s) 11
AspS9I GGNCC 4 cut(s) 63, 176, 256, 270
AsuC2I CCSGG 4 cut(s) 44, 45, 138, 139
AsuHPI GGTGA 2 cut(s) 223, 259
AvaI CYCGRG 3 cut(s) 43, 137, 183
AvaII GGWCC 2 cut(s) 256, 270
BalI TGGCCA 1 cut(s) 346
BanI GGYRCC 1 cut(s) 190
BccI CCATC 2 cut(s) 256, 272
BceAI ACGGC 1 cut(s) 178
BcnI CCSGG 4 cut(s) 44, 45, 138, 139
BcoDI GTCTC 1 cut(s) 329
BfaI CTAG 2 cut(s) 38, 441
BfuAI ACCTGC 1 cut(s) 235
Bme1390I CCNGG 4 cut(s) 44, 45, 138, 139
Bme18I GGWCC 2 cut(s) 256, 270
BmeT110I CYCGRG 3 cut(s) 43, 137, 183
BmgT120I GGNCC 4 cut(s) 63, 176, 256, 270
BmiI GGNNCC 3 cut(s) 177, 192, 257
BmrFI CCNGG 4 cut(s) 44, 45, 138, 139
BplI GAGNNNNNCTC 1 cut(s) 422
BpuMI CCSGG 4 cut(s) 44, 45, 138, 139
Bsa29I ATCGAT 1 cut(s) 80
BsaHI GRCGYC 1 cut(s) 201
BsaJI CCNNGG 5 cut(s) 43, 137, 171, 327, 347
BsaWI WCCGGW 1 cut(s) 11
BsaXI ACNNNNNCTCC 4 cut(s) 179, 209, 326, 356
Bsc4I CCNNNNNNNGG 6 cut(s) 28, 29, 43, 138, 173, 279
Bse118I RCCGGY 1 cut(s) 11
BseCI ATCGAT 1 cut(s) 80
BseDI CCNNGG 5 cut(s) 43, 137, 171, 327, 347
BseLI CCNNNNNNNGG 6 cut(s) 28, 29, 43, 138, 173, 279
BseMII CTCAG 1 cut(s) 322
Bsh1236I CGCG 1 cut(s) 173
Bsh1285I CGRYCG 1 cut(s) 171
BshFI GGCC 5 cut(s) 36, 64, 178, 326, 346
BshNI GGYRCC 1 cut(s) 190
BshTI ACCGGT 1 cut(s) 11
BshVI ATCGAT 1 cut(s) 80
BsiEI CGRYCG 1 cut(s) 171
BsiHKCI CYCGRG 3 cut(s) 43, 137, 183
BsiSI CCGG 3 cut(s) 12, 44, 138
BslFI GGGAC 1 cut(s) 5
BslI CCNNNNNNNGG 6 cut(s) 28, 29, 43, 138, 173, 279
BsmAI GTCTC 1 cut(s) 329
BsmBI CGTCTC 1 cut(s) 329
BsmFI GGGAC 1 cut(s) 5
BsnI GGCC 5 cut(s) 36, 64, 178, 326, 346
BsoBI CYCGRG 3 cut(s) 43, 137, 183
Bsp143I GATC 1 cut(s) 282
BspACI CCGC 5 cut(s) 107, 171, 173, 332, 374
BspANI GGCC 5 cut(s) 36, 64, 178, 326, 346
BspCNI CTCAG 1 cut(s) 321
BspDI ATCGAT 1 cut(s) 80
BspFNI CGCG 1 cut(s) 173
BspLI GGNNCC 3 cut(s) 177, 192, 257
BspMI ACCTGC 1 cut(s) 235
BspPI GGATC 1 cut(s) 290
BspT107I GGYRCC 1 cut(s) 190
BsrFI RCCGGY 1 cut(s) 11
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 5 cut(s) 43, 137, 171, 327, 347
BssMI GATC 1 cut(s) 282
BssNI GRCGYC 1 cut(s) 201
BssT1I CCWWGG 2 cut(s) 327, 347
Bst4CI ACNGT 1 cut(s) 292
BstACI GRCGYC 1 cut(s) 201
BstC8I GCNNGC 3 cut(s) 146, 161, 315
BstDEI CTNAG 2 cut(s) 119, 308
BstDSI CCRYGG 1 cut(s) 171
BstFNI CGCG 1 cut(s) 173
BstKTI GATC 1 cut(s) 285
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 1 cut(s) 282
BstMCI CGRYCG 1 cut(s) 171
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstSCI CCNGG 4 cut(s) 42, 43, 136, 137
BstUI CGCG 1 cut(s) 173
Bsu15I ATCGAT 1 cut(s) 80
BsuRI GGCC 5 cut(s) 36, 64, 178, 326, 346
BsuTUI ATCGAT 1 cut(s) 80
BtgI CCRYGG 1 cut(s) 171
BtgZI GCGATG 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 211
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 3 cut(s) 146, 161, 315
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 4 cut(s) 63, 176, 256, 270
Cfr42I CCGCGG 1 cut(s) 174
Cfr9I CCCGGG 2 cut(s) 43, 137
ClaI ATCGAT 1 cut(s) 80
CspAI ACCGGT 1 cut(s) 11
CviAII CATG 1 cut(s) 383
CviJI RGCY 9 cut(s) 5, 36, 64, 96, 148, 178, 326, 346, 438
CviKI_1 RGCY 9 cut(s) 5, 36, 64, 96, 148, 178, 326, 346, 438
DdeI CTNAG 2 cut(s) 119, 308
DpnI GATC 1 cut(s) 284
DpnII GATC 1 cut(s) 282
DrdI GACNNNNNNGTC 1 cut(s) 47
DseDI GACNNNNNNGTC 1 cut(s) 47
EaeI YGGCCR 1 cut(s) 344
EciI GGCGGA 1 cut(s) 347
Eco130I CCWWGG 2 cut(s) 327, 347
Eco147I AGGCCT 1 cut(s) 326
Eco47I GGWCC 2 cut(s) 256, 270
Eco88I CYCGRG 3 cut(s) 43, 137, 183
EcoO109I RGGNCCY 1 cut(s) 270
EcoT14I CCWWGG 2 cut(s) 327, 347
ErhI CCWWGG 2 cut(s) 327, 347
Esp3I CGTCTC 1 cut(s) 329
FaeI CATG 1 cut(s) 386
FaiI YATR 2 cut(s) 372, 384
FaqI GGGAC 1 cut(s) 5
FatI CATG 1 cut(s) 382
FauI CCCGC 1 cut(s) 166
FspBI CTAG 2 cut(s) 38, 441
HaeIII GGCC 5 cut(s) 36, 64, 178, 326, 346
HapII CCGG 3 cut(s) 12, 44, 138
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 1 cut(s) 386
HinfI GANTC 2 cut(s) 48, 181
HpaII CCGG 3 cut(s) 12, 44, 138
HphI GGTGA 2 cut(s) 223, 259
Hpy166II GTNNAC 1 cut(s) 125
Hpy188I TCNGA 3 cut(s) 152, 168, 222
Hpy188III TCNNGA 4 cut(s) 185, 259, 286, 441
Hpy8I GTNNAC 1 cut(s) 125
HpyAV CCTTC 1 cut(s) 316
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 1 cut(s) 144
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 2 cut(s) 119, 308
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 1 cut(s) 386
KspI CCGCGG 1 cut(s) 174
Kzo9I GATC 1 cut(s) 282
LmnI GCTCC 1 cut(s) 153
LpnPI CCDG 9 cut(s) 25, 46, 57, 79, 151, 230, 272, 286, 295
MaeI CTAG 2 cut(s) 38, 441
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 3 cut(s) 197, 211, 286
MalI GATC 1 cut(s) 284
MboI GATC 1 cut(s) 282
MlsI TGGCCA 1 cut(s) 346
MluCI AATT 2 cut(s) 400, 418
MluNI TGGCCA 1 cut(s) 346
MlyI GAGTC 2 cut(s) 57, 175
MmeI TCCRAC 1 cut(s) 191
MnlI CCTC 9 cut(s) 174, 181, 202, 216, 243, 261, 333, 402, 408
Mox20I TGGCCA 1 cut(s) 346
MscI TGGCCA 1 cut(s) 346
MseI TTAA 1 cut(s) 378
Msp20I TGGCCA 1 cut(s) 346
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 3 cut(s) 12, 44, 138
MspR9I CCNGG 4 cut(s) 44, 45, 138, 139
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 323
NciI CCSGG 4 cut(s) 44, 45, 138, 139
NdeII GATC 1 cut(s) 282
NlaIII CATG 1 cut(s) 386
NlaIV GGNNCC 3 cut(s) 177, 192, 257
NmuCI GTSAC 3 cut(s) 197, 211, 286
PaqCI CACCTGC 1 cut(s) 235
PceI AGGCCT 1 cut(s) 326
PinAI ACCGGT 1 cut(s) 11
PleI GAGTC 2 cut(s) 56, 175
PpsI GAGTC 2 cut(s) 56, 175
PpuMI RGGWCCY 1 cut(s) 270
Psp5II RGGWCCY 1 cut(s) 270
PspN4I GGNNCC 3 cut(s) 177, 192, 257
PspPI GGNCC 4 cut(s) 63, 176, 256, 270
PspPPI RGGWCCY 1 cut(s) 270
SacII CCGCGG 1 cut(s) 174
SaqAI TTAA 1 cut(s) 378
Sau3AI GATC 1 cut(s) 282
Sau96I GGNCC 4 cut(s) 63, 176, 256, 270
SchI GAGTC 2 cut(s) 57, 175
ScrFI CCNGG 4 cut(s) 44, 45, 138, 139
Sfr303I CCGCGG 1 cut(s) 174
SgrBI CCGCGG 1 cut(s) 174
SinI GGWCC 2 cut(s) 256, 270
SmaI CCCGGG 2 cut(s) 45, 139
Sse9I AATT 2 cut(s) 400, 418
SseBI AGGCCT 1 cut(s) 326
SsiI CCGC 5 cut(s) 107, 171, 173, 332, 374
SspMI CTAG 2 cut(s) 38, 441
StuI AGGCCT 1 cut(s) 326
StyD4I CCNGG 4 cut(s) 42, 43, 136, 137
StyI CCWWGG 2 cut(s) 327, 347
TaaI ACNGT 1 cut(s) 292
TaiI ACGT 1 cut(s) 204
TaqI TCGA 2 cut(s) 80, 240
TasI AATT 2 cut(s) 400, 418
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TscAI CASTG 1 cut(s) 211
TseFI GTSAC 3 cut(s) 197, 211, 286
Tsp45I GTSAC 3 cut(s) 197, 211, 286
TspMI CCCGGG 2 cut(s) 43, 137
TspRI CASTG 1 cut(s) 211
VpaK11BI GGWCC 2 cut(s) 256, 270
XapI RAATTY 2 cut(s) 400, 418
XbaI TCTAGA 1 cut(s) 440
XmaI CCCGGG 2 cut(s) 43, 137
XspI CTAG 2 cut(s) 38, 441
ZraI GACGTC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.