Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0009740

Physical Location & Seq

Genomic Coordinates Forward (+)

6540358 .. 6541013

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026855

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGCAATGTTATGGCATGGGTCCCGACACAAAGGGTAATACTGCCGTTGGCGTCCGAGGCACCGACACCATCATTCTCAGATCCCAACGGAAATGCTGCGGAGATAGCCCGGCCCAGCTGGAACTGAATTGCCTCTCAGATTCTGAAGATCTTAACCTCCCTGGAACCGAGAAAGAGTTCAAGATTTTCATGGAGAAATATGGGAAGAAGTATCCAACTAGAAAGGAGTACATGCAGAGCCGCCGAGCACCAAGCTCTGGATCCGACGGCAGTCCACGGCTTCAAAGAGTTCTCGGATCTGTCCGAGGAGGCGTTCGGCCAGGTGAGGTGGTTCAGACGGAGAGGTCCTGCAACGGGATCGTGACTGTCCATTTTGACTATCTTAGGCATGCAGAGAAGGCCTTGGCGGAGAAGAGGTGGCCAAGGTGTGTTACTGTGTTTGGGTATGGGGTTACTCTTGGATTTGGGAGTGTGAATTTGGAGAGGTGGAGGAATTTTGTGGGGAGGATTGGCTCTAGATTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04142 ko04210 map04142 map04210

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

176

Amino Acids

19.53

Weight (kDa)

9.56

Isoelectric Point (pI)

47.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009740)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0428301
rosa_laevigata	RLG00000003070 RLG00000007693 RLG00000026855
rosa_multiflora	Rmu_sc0000745.1_g000003 Rmu_sc0001524.1_g000052 Rmu_sc0002841.1_g000002 Rmu_sc0003153.1_g000010 Rmu_sc0003413.1_g000025 Rmu_sc0012746.1_g000019 Rmu_sc0020260.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186450
rosa_samantha	Rh1CG087900 Rh2AG101200 Rh2AG120600 Rh3AG298400 Rh3BG370900 Rh5AG245100 Rh5DG552400 Rh6CG347700 Rh7CG179600 Rh7CG189200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	343
AccB1I	GGYRCC	1 cut(s)	59
AccB7I	CCANNNNNTGG	1 cut(s)	257
AciI	CCGC	3 cut(s)	99, 241, 407
AclWI	GGATC	5 cut(s)	75, 255, 268, 304, 365
AcoI	YGGCCR	2 cut(s)	317, 419
AcsI	RAATTY	2 cut(s)	475, 493
AcuI	CTGAAG	1 cut(s)	165
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	2 cut(s)	257, 354
AgsI	TTSAA	2 cut(s)	181, 284
AjnI	CCWGG	2 cut(s)	160, 319
AluBI	AGCT	2 cut(s)	118, 255
AluI	AGCT	2 cut(s)	118, 255
Alw21I	GWGCWC	1 cut(s)	250
AlwI	GGATC	5 cut(s)	75, 255, 268, 304, 365
AlwNI	CAGNNNCTG	1 cut(s)	143
AoxI	GGCC	4 cut(s)	111, 317, 399, 419
ApeKI	GCWGC	1 cut(s)	96
ApoI	RAATTY	2 cut(s)	475, 493
Asp700I	GAANNNNTTC	1 cut(s)	176
AspS9I	GGNCC	3 cut(s)	20, 112, 345
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	335
AvaII	GGWCC	2 cut(s)	20, 345
BalI	TGGCCA	1 cut(s)	421
BamHI	GGATCC	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	1 cut(s)	77
BceAI	ACGGC	3 cut(s)	29, 283, 293
BcgI	CGANNNNNNTGC	2 cut(s)	340, 374
BciT130I	CCWGG	2 cut(s)	162, 321
BciVI	GTATCC	1 cut(s)	222
BcnI	CCSGG	1 cut(s)	110
BfaI	CTAG	2 cut(s)	219, 516
BfuI	GTATCC	1 cut(s)	222
BglII	AGATCT	1 cut(s)	148
BisI	GCNGC	2 cut(s)	97, 241
BlsI	GCNGC	2 cut(s)	98, 242
Bme1390I	CCNGG	3 cut(s)	110, 162, 321
Bme18I	GGWCC	2 cut(s)	20, 345
BmgT120I	GGNCC	3 cut(s)	20, 112, 345
BmiI	GGNNCC	5 cut(s)	21, 22, 61, 166, 262
BmrFI	CCNGG	3 cut(s)	110, 162, 321
BoxI	GACNNNNGTC	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	6 cut(s)	55, 160, 275, 304, 402, 422
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 354
Bse3DI	GCAATG	1 cut(s)	11
BseBI	CCWGG	2 cut(s)	162, 321
BseDI	CCNNGG	6 cut(s)	55, 160, 275, 304, 402, 422
BseLI	CCNNNNNNNGG	2 cut(s)	257, 354
BseMI	GCAATG	1 cut(s)	11
BseMII	CTCAG	2 cut(s)	91, 150
BseRI	GAGGAG	1 cut(s)	321
BseXI	GCAGC	1 cut(s)	83
BseYI	CCCAGC	1 cut(s)	114
BshFI	GGCC	4 cut(s)	113, 319, 401, 421
BshNI	GGYRCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	110
BslFI	GGGAC	1 cut(s)	6
BslI	CCNNNNNNNGG	2 cut(s)	257, 354
BsmFI	GGGAC	1 cut(s)	6
BsnI	GGCC	4 cut(s)	113, 319, 401, 421
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	5 cut(s)	80, 148, 260, 296, 357
BspACI	CCGC	3 cut(s)	99, 241, 407
BspANI	GGCC	4 cut(s)	113, 319, 401, 421
BspCNI	CTCAG	2 cut(s)	90, 149
BspLI	GGNNCC	5 cut(s)	21, 22, 61, 166, 262
BspPI	GGATC	5 cut(s)	75, 255, 268, 304, 365
BspT107I	GGYRCC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	11
BssECI	CCNNGG	6 cut(s)	55, 160, 275, 304, 402, 422
BssMI	GATC	5 cut(s)	80, 148, 260, 296, 357
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	2 cut(s)	402, 422
Bst2UI	CCWGG	2 cut(s)	162, 321
Bst4CI	ACNGT	2 cut(s)	367, 436
Bst6I	CTCTTC	1 cut(s)	407
BstACI	GRCGYC	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	390
BstDEI	CTNAG	3 cut(s)	77, 136, 383
BstDSI	CCRYGG	1 cut(s)	275
BstKTI	GATC	5 cut(s)	83, 151, 263, 299, 360
BstMBI	GATC	5 cut(s)	80, 148, 260, 296, 357
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 105, 398
BstNI	CCWGG	2 cut(s)	162, 321
BstNSI	RCATGY	2 cut(s)	235, 392
BstPAI	GACNNNNGTC	1 cut(s)	270
BstSCI	CCNGG	3 cut(s)	108, 160, 319
BstV1I	GCAGC	1 cut(s)	83
BstX2I	RGATCY	4 cut(s)	80, 148, 260, 296
BstYI	RGATCY	4 cut(s)	80, 148, 260, 296
BsuI	GTATCC	1 cut(s)	222
BsuRI	GGCC	4 cut(s)	113, 319, 401, 421
BtgI	CCRYGG	1 cut(s)	275
Cac8I	GCNNGC	1 cut(s)	390
CaiI	CAGNNNCTG	1 cut(s)	143
Cfr13I	GGNCC	3 cut(s)	20, 112, 345
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	4 cut(s)	16, 190, 232, 389
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	3 cut(s)	77, 136, 383
DpnI	GATC	5 cut(s)	82, 150, 262, 298, 359
DpnII	GATC	5 cut(s)	80, 148, 260, 296, 357
DrdI	GACNNNNNNGTC	1 cut(s)	343
DseDI	GACNNNNNNGTC	1 cut(s)	343
EaeI	YGGCCR	2 cut(s)	317, 419
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
EciI	GGCGGA	1 cut(s)	422
Eco130I	CCWWGG	2 cut(s)	402, 422
Eco147I	AGGCCT	1 cut(s)	401
Eco47I	GGWCC	2 cut(s)	20, 345
Eco57I	CTGAAG	1 cut(s)	165
EcoO109I	RGGNCCY	2 cut(s)	20, 345
EcoRII	CCWGG	2 cut(s)	160, 319
EcoT14I	CCWWGG	2 cut(s)	402, 422
ErhI	CCWWGG	2 cut(s)	402, 422
FaeI	CATG	4 cut(s)	19, 193, 235, 392
FaiI	YATR	7 cut(s)	12, 17, 191, 201, 233, 390, 447
FaqI	GGGAC	1 cut(s)	6
FatI	CATG	4 cut(s)	15, 189, 231, 388
Fnu4HI	GCNGC	2 cut(s)	97, 241
Fsp4HI	GCNGC	2 cut(s)	97, 241
FspBI	CTAG	2 cut(s)	219, 516
GluI	GCNGC	2 cut(s)	97, 241
GsaI	CCCAGC	1 cut(s)	118
HaeIII	GGCC	4 cut(s)	113, 319, 401, 421
HapII	CCGG	1 cut(s)	110
HgaI	GACGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	4 cut(s)	19, 193, 235, 392
HinfI	GANTC	1 cut(s)	140
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188I	TCNGA	8 cut(s)	56, 80, 139, 145, 265, 296, 305, 336
Hpy188III	TCNNGA	5 cut(s)	23, 181, 258, 361, 516
Hpy8I	GTNNAC	1 cut(s)	275
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	1 cut(s)	391
HpyCH4III	ACNGT	2 cut(s)	367, 436
HpyCH4V	TGCA	4 cut(s)	4, 235, 351, 392
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 105, 398
HpyF3I	CTNAG	3 cut(s)	77, 136, 383
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	4 cut(s)	19, 193, 235, 392
KflI	GGGWCCC	1 cut(s)	20
Kzo9I	GATC	5 cut(s)	80, 148, 260, 296, 357
LpnPI	CCDG	9 cut(s)	104, 123, 128, 147, 174, 243, 306, 333, 361
Lsp1109I	GCAGC	1 cut(s)	83
MaeI	CTAG	2 cut(s)	219, 516
MaeIII	GTNAC	3 cut(s)	361, 430, 451
MalI	GATC	5 cut(s)	82, 150, 262, 298, 359
MboI	GATC	5 cut(s)	80, 148, 260, 296, 357
MboII	GAAGA	3 cut(s)	158, 217, 424
MflI	RGATCY	4 cut(s)	80, 148, 260, 296
MhlI	GDGCHC	1 cut(s)	250
MlsI	TGGCCA	1 cut(s)	421
MluCI	AATT	4 cut(s)	127, 475, 493, 523
MluNI	TGGCCA	1 cut(s)	421
MmeI	TCCRAC	2 cut(s)	239, 288
Mox20I	TGGCCA	1 cut(s)	421
MroXI	GAANNNNTTC	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	421
MseI	TTAA	3 cut(s)	153, 521, 526
Msp20I	TGGCCA	1 cut(s)	421
MspA1I	CMGCKG	1 cut(s)	118
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	3 cut(s)	110, 162, 321
MvaI	CCWGG	2 cut(s)	162, 321
MwoI	GCNNNNNNNGC	3 cut(s)	57, 105, 398
NciI	CCSGG	1 cut(s)	110
NdeII	GATC	5 cut(s)	80, 148, 260, 296, 357
NlaIII	CATG	4 cut(s)	19, 193, 235, 392
NlaIV	GGNNCC	5 cut(s)	21, 22, 61, 166, 262
NmeAIII	GCCGAG	1 cut(s)	269
NmuCI	GTSAC	1 cut(s)	361
NspI	RCATGY	2 cut(s)	235, 392
PaeI	GCATGC	1 cut(s)	392
PceI	AGGCCT	1 cut(s)	401
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	140
PflMI	CCANNNNNTGG	1 cut(s)	257
PkrI	GCNGC	2 cut(s)	98, 242
PpuMI	RGGWCCY	2 cut(s)	20, 345
PshAI	GACNNNNGTC	1 cut(s)	270
Psp5II	RGGWCCY	2 cut(s)	20, 345
Psp6I	CCWGG	2 cut(s)	160, 319
PspFI	CCCAGC	1 cut(s)	114
PspGI	CCWGG	2 cut(s)	160, 319
PspN4I	GGNNCC	5 cut(s)	21, 22, 61, 166, 262
PspPI	GGNCC	3 cut(s)	20, 112, 345
PspPPI	RGGWCCY	2 cut(s)	20, 345
PstNI	CAGNNNCTG	1 cut(s)	143
PsuI	RGATCY	4 cut(s)	80, 148, 260, 296
PvuII	CAGCTG	1 cut(s)	118
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SaqAI	TTAA	3 cut(s)	153, 521, 526
SatI	GCNGC	2 cut(s)	97, 241
Sau3AI	GATC	5 cut(s)	80, 148, 260, 296, 357
Sau96I	GGNCC	3 cut(s)	20, 112, 345
ScrFI	CCNGG	3 cut(s)	110, 162, 321
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	9 cut(s)	120, 159, 257, 325, 330, 347, 419, 428, 488
SinI	GGWCC	2 cut(s)	20, 345
SphI	GCATGC	1 cut(s)	392
Sse9I	AATT	4 cut(s)	127, 475, 493, 523
SseBI	AGGCCT	1 cut(s)	401
SsiI	CCGC	3 cut(s)	99, 241, 407
SspMI	CTAG	2 cut(s)	219, 516
StuI	AGGCCT	1 cut(s)	401
StyD4I	CCNGG	3 cut(s)	108, 160, 319
StyI	CCWWGG	2 cut(s)	402, 422
TaaI	ACNGT	2 cut(s)	367, 436
TasI	AATT	4 cut(s)	127, 475, 493, 523
TatI	WGTACW	1 cut(s)	228
TauI	GCSGC	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	3 cut(s)	153, 521, 526
Tru9I	TTAA	3 cut(s)	153, 521, 526
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	1 cut(s)	96
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	1 cut(s)	178
TspGWI	ACGGA	2 cut(s)	103, 353
Van91I	CCANNNNNTGG	1 cut(s)	257
VpaK11BI	GGWCC	2 cut(s)	20, 345
XapI	RAATTY	2 cut(s)	475, 493
XbaI	TCTAGA	1 cut(s)	515
XceI	RCATGY	2 cut(s)	235, 392
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	2 cut(s)	219, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.