Rmu_sc0000745.1_g000003

Protein terminal ear1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000745.1
OG0009740
Physical Location & Seq
Forward (+)
1475 .. 4918
3444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000745.1_g000003.1.cds

Sequence Viewer

Length: 687 bp
atgtttcagtggtctcgagagctgtctgatccaactgaacacgagttgtatttgtttgctactattgttatcggtcttgattatctgcaaaacagacgaaggtcagagggaagacggggtgtgctggtcttcgacgctctgatgcctaacaggtttgtgggagcttggttccgtttctttcggtgtgggacgtttgggatcccgatatcgcccctaggggtatcagaacccccagctgggagcttatcttgctggtgtataggcgatatgattcttgtgcttccagtcgaggagttcaggcccagaaatagaaacctgataccctttttcaacccaccaccaccaccacctctaccaactaagtttattatccctacccaagtgcacgccccgatcctgcctctggccgtggggccgactcaggcggtgcagatgaggccggtaccgtgtgatgtcagcgaggtgatgattcggagggagttggaggctttcgagcaggtgaggtgggtcccgatagagaggccctgtgacgggatcatgaacgtccatttctacaatctcaggcatgtagataagaccttggcggagatttgggacaagcagatgcaacaccaacccacccggcctcttcctggaggggaatggagggctcgtattggacgaccaaggtggctgcggtggacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 RRM_2

Protein Analysis

228

Amino Acids

26.47

Weight (kDa)

9.22

Isoelectric Point (pI)

67.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 487
Acc36I ACCTGC 1 cut(s) 487
Acc65I GGTACC 1 cut(s) 442
AccB1I GGYRCC 1 cut(s) 442
AciI CCGC 3 cut(s) 425, 584, 676
AclWI GGATC 5 cut(s) 23, 193, 206, 388, 542
AcoI YGGCCR 1 cut(s) 405
AfaI GTAC 1 cut(s) 444
AfiI CCNNNNNNNGG 6 cut(s) 236, 237, 403, 530, 531, 632
AgsI TTSAA 1 cut(s) 331
AjnI CCWGG 1 cut(s) 631
AluBI AGCT 4 cut(s) 22, 164, 236, 243
AluI AGCT 4 cut(s) 22, 164, 236, 243
Alw21I GWGCWC 1 cut(s) 387
Alw26I GTCTC 1 cut(s) 18
Alw44I GTGCAC 1 cut(s) 383
AlwI GGATC 5 cut(s) 23, 193, 206, 388, 542
Ama87I CYCGRG 1 cut(s) 15
AoxI GGCC 6 cut(s) 299, 405, 413, 437, 521, 623
ApaLI GTGCAC 1 cut(s) 383
ApeKI GCWGC 1 cut(s) 673
Asp718I GGTACC 1 cut(s) 442
AspA2I CCTAGG 1 cut(s) 214
AspS9I GGNCC 5 cut(s) 300, 413, 508, 522, 681
AsuC2I CCSGG 1 cut(s) 622
AsuHPI GGTGA 2 cut(s) 475, 511
AvaI CYCGRG 1 cut(s) 15
AvaII GGWCC 2 cut(s) 508, 681
AvrII CCTAGG 1 cut(s) 214
BaeGI GKGCMC 1 cut(s) 387
BamHI GGATCC 1 cut(s) 198
BanI GGYRCC 1 cut(s) 442
BanII GRGCYC 1 cut(s) 652
BauI CACGAG 1 cut(s) 41
BbsI GAAGAC 2 cut(s) 118, 121
Bbv12I GWGCWC 1 cut(s) 387
BbvI GCAGC 1 cut(s) 660
BceAI ACGGC 1 cut(s) 392
BciT130I CCWGG 1 cut(s) 633
BcnI CCSGG 1 cut(s) 622
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 2 cut(s) 215, 685
BfuAI ACCTGC 1 cut(s) 487
BisI GCNGC 1 cut(s) 674
BlnI CCTAGG 1 cut(s) 214
BlsI GCNGC 1 cut(s) 675
Bme1390I CCNGG 2 cut(s) 622, 633
Bme18I GGWCC 2 cut(s) 508, 681
BmeT110I CYCGRG 1 cut(s) 15
BmgT120I GGNCC 5 cut(s) 300, 413, 508, 522, 681
BmiI GGNNCC 6 cut(s) 170, 200, 414, 444, 509, 510
BmrFI CCNGG 2 cut(s) 622, 633
BmsI GCATC 2 cut(s) 132, 594
BoxI GACNNNNGTC 1 cut(s) 100
BpiI GAAGAC 2 cut(s) 118, 121
BpmI CTGGAG 1 cut(s) 654
BpuMI CCSGG 1 cut(s) 622
BsaI GGTCTC 1 cut(s) 18
BsaJI CCNNGG 4 cut(s) 214, 408, 579, 665
BsaXI ACNNNNNCTCC 2 cut(s) 637, 667
Bsc4I CCNNNNNNNGG 6 cut(s) 236, 237, 403, 530, 531, 632
Bse118I RCCGGY 1 cut(s) 439
Bse1I ACTGG 1 cut(s) 284
BseBI CCWGG 1 cut(s) 633
BseDI CCNNGG 4 cut(s) 214, 408, 579, 665
BseLI CCNNNNNNNGG 6 cut(s) 236, 237, 403, 530, 531, 632
BseMII CTCAG 2 cut(s) 434, 574
BseNI ACTGG 1 cut(s) 284
BseRI GAGGAG 1 cut(s) 305
BseSI GKGCMC 1 cut(s) 387
BseXI GCAGC 1 cut(s) 660
BseYI CCCAGC 2 cut(s) 232, 236
BsgI GTGCAG 1 cut(s) 449
BshFI GGCC 6 cut(s) 301, 407, 415, 439, 523, 625
BshNI GGYRCC 1 cut(s) 442
BsiHKAI GWGCWC 1 cut(s) 387
BsiHKCI CYCGRG 1 cut(s) 15
BsiSI CCGG 2 cut(s) 440, 622
BslFI GGGAC 3 cut(s) 202, 494, 608
BslI CCNNNNNNNGG 6 cut(s) 236, 237, 403, 530, 531, 632
BsmAI GTCTC 1 cut(s) 18
BsmFI GGGAC 3 cut(s) 202, 494, 608
BsnI GGCC 6 cut(s) 301, 407, 415, 439, 523, 625
Bso31I GGTCTC 1 cut(s) 18
BsoBI CYCGRG 1 cut(s) 15
Bsp1286I GDGCHC 2 cut(s) 387, 652
Bsp143I GATC 4 cut(s) 28, 198, 393, 534
BspACI CCGC 3 cut(s) 425, 584, 676
BspANI GGCC 6 cut(s) 301, 407, 415, 439, 523, 625
BspCNI CTCAG 2 cut(s) 433, 573
BspHI TCATGA 1 cut(s) 537
BspLI GGNNCC 6 cut(s) 170, 200, 414, 444, 509, 510
BspMI ACCTGC 1 cut(s) 487
BspPI GGATC 5 cut(s) 23, 193, 206, 388, 542
BspT107I GGYRCC 1 cut(s) 442
BspTNI GGTCTC 1 cut(s) 18
BsrFI RCCGGY 1 cut(s) 439
BsrI ACTGG 1 cut(s) 284
BssAI RCCGGY 1 cut(s) 439
BssECI CCNNGG 4 cut(s) 214, 408, 579, 665
BssMI GATC 4 cut(s) 28, 198, 393, 534
BssSI CACGAG 1 cut(s) 41
BssT1I CCWWGG 3 cut(s) 214, 579, 665
Bst2BI CACGAG 1 cut(s) 41
Bst2UI CCWGG 1 cut(s) 633
Bst4CI ACNGT 1 cut(s) 447
Bst6I CTCTTC 1 cut(s) 633
BstC8I GCNNGC 1 cut(s) 387
BstDEI CTNAG 3 cut(s) 360, 420, 560
BstDSI CCRYGG 1 cut(s) 408
BstKTI GATC 4 cut(s) 31, 201, 396, 537
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 4 cut(s) 28, 198, 393, 534
BstMWI GCNNNNNNNGC 2 cut(s) 249, 436
BstNI CCWGG 1 cut(s) 633
BstNSI RCATGY 1 cut(s) 569
BstPAI GACNNNNGTC 1 cut(s) 100
BstSCI CCNGG 2 cut(s) 620, 631
BstSLI GKGCMC 1 cut(s) 387
BstV1I GCAGC 1 cut(s) 660
BstV2I GAAGAC 2 cut(s) 118, 121
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
BsuRI GGCC 6 cut(s) 301, 407, 415, 439, 523, 625
BtgI CCRYGG 1 cut(s) 408
BtsIMutI CAGTG 1 cut(s) 14
BveI ACCTGC 1 cut(s) 487
Cac8I GCNNGC 1 cut(s) 387
CciI TCATGA 1 cut(s) 537
Cfr10I RCCGGY 1 cut(s) 439
Cfr13I GGNCC 5 cut(s) 300, 413, 508, 522, 681
CseI GACGC 1 cut(s) 143
Csp6I GTAC 1 cut(s) 443
CviAII CATG 2 cut(s) 538, 566
CviQI GTAC 1 cut(s) 443
DdeI CTNAG 3 cut(s) 360, 420, 560
DpnI GATC 4 cut(s) 30, 200, 395, 536
DpnII GATC 4 cut(s) 28, 198, 393, 534
EaeI YGGCCR 1 cut(s) 405
Eam1104I CTCTTC 1 cut(s) 633
EarI CTCTTC 1 cut(s) 633
EciI GGCGGA 1 cut(s) 599
Eco130I CCWWGG 3 cut(s) 214, 579, 665
Eco24I GRGCYC 1 cut(s) 652
Eco31I GGTCTC 1 cut(s) 18
Eco32I GATATC 1 cut(s) 207
Eco47I GGWCC 2 cut(s) 508, 681
Eco88I CYCGRG 1 cut(s) 15
EcoO109I RGGNCCY 2 cut(s) 508, 522
EcoRII CCWGG 1 cut(s) 631
EcoRV GATATC 1 cut(s) 207
EcoT14I CCWWGG 3 cut(s) 214, 579, 665
EcoT38I GRGCYC 1 cut(s) 652
ErhI CCWWGG 3 cut(s) 214, 579, 665
FaeI CATG 2 cut(s) 541, 569
FaiI YATR 4 cut(s) 260, 269, 539, 567
FaqI GGGAC 3 cut(s) 202, 494, 608
FatI CATG 2 cut(s) 537, 565
Fnu4HI GCNGC 1 cut(s) 674
FriOI GRGCYC 1 cut(s) 652
Fsp4HI GCNGC 1 cut(s) 674
FspBI CTAG 2 cut(s) 215, 685
GluI GCNGC 1 cut(s) 674
GsaI CCCAGC 2 cut(s) 236, 240
GsuI CTGGAG 1 cut(s) 654
HaeIII GGCC 6 cut(s) 301, 407, 415, 439, 523, 625
HapII CCGG 2 cut(s) 440, 622
HgaI GACGC 1 cut(s) 143
Hin1II CATG 2 cut(s) 541, 569
HinfI GANTC 3 cut(s) 271, 418, 469
HpaII CCGG 2 cut(s) 440, 622
HphI GGTGA 2 cut(s) 475, 511
Hpy166II GTNNAC 2 cut(s) 385, 681
Hpy188I TCNGA 5 cut(s) 28, 106, 141, 226, 474
Hpy188III TCNNGA 6 cut(s) 15, 17, 77, 202, 511, 538
Hpy8I GTNNAC 2 cut(s) 385, 681
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 93
HpyCH4III ACNGT 1 cut(s) 447
HpyCH4IV ACGT 2 cut(s) 191, 543
HpyCH4V TGCA 4 cut(s) 88, 385, 430, 607
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 436
HpyF3I CTNAG 3 cut(s) 360, 420, 560
HpySE526I ACGT 2 cut(s) 191, 543
Hsp92II CATG 2 cut(s) 541, 569
KflI GGGWCCC 1 cut(s) 508
KpnI GGTACC 1 cut(s) 446
Kzo9I GATC 4 cut(s) 28, 198, 393, 534
LmnI GCTCC 2 cut(s) 161, 240
Lsp1109I GCAGC 1 cut(s) 660
LweI GCATC 2 cut(s) 132, 594
MaeI CTAG 2 cut(s) 215, 685
MaeII ACGT 2 cut(s) 191, 543
MaeIII GTNAC 1 cut(s) 527
MalI GATC 4 cut(s) 30, 200, 395, 536
MboI GATC 4 cut(s) 28, 198, 393, 534
MboII GAAGA 3 cut(s) 121, 123, 620
MflI RGATCY 1 cut(s) 198
MhlI GDGCHC 2 cut(s) 387, 652
MlyI GAGTC 1 cut(s) 412
MmeI TCCRAC 2 cut(s) 56, 462
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 2 cut(s) 440, 622
MspR9I CCNGG 2 cut(s) 622, 633
MvaI CCWGG 1 cut(s) 633
MwoI GCNNNNNNNGC 2 cut(s) 249, 436
NciI CCSGG 1 cut(s) 622
NdeII GATC 4 cut(s) 28, 198, 393, 534
NlaIII CATG 2 cut(s) 541, 569
NlaIV GGNNCC 6 cut(s) 170, 200, 414, 444, 509, 510
NmuCI GTSAC 1 cut(s) 527
NspI RCATGY 1 cut(s) 569
PaeR7I CTCGAG 1 cut(s) 15
PagI TCATGA 1 cut(s) 537
PaqCI CACCTGC 1 cut(s) 487
PcsI WCGNNNNNNNCGW 1 cut(s) 658
PfeI GAWTC 2 cut(s) 271, 469
PfoI TCCNGGA 1 cut(s) 631
PkrI GCNGC 1 cut(s) 675
PleI GAGTC 1 cut(s) 412
PpsI GAGTC 1 cut(s) 412
PpuMI RGGWCCY 1 cut(s) 508
PshAI GACNNNNGTC 1 cut(s) 100
Psp5II RGGWCCY 1 cut(s) 508
Psp6I CCWGG 1 cut(s) 631
PspFI CCCAGC 2 cut(s) 232, 236
PspGI CCWGG 1 cut(s) 631
PspN4I GGNNCC 6 cut(s) 170, 200, 414, 444, 509, 510
PspPI GGNCC 5 cut(s) 300, 413, 508, 522, 681
PspPPI RGGWCCY 1 cut(s) 508
PsuI RGATCY 1 cut(s) 198
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 1 cut(s) 444
RsaNI GTAC 1 cut(s) 443
SatI GCNGC 1 cut(s) 674
Sau3AI GATC 4 cut(s) 28, 198, 393, 534
Sau96I GGNCC 5 cut(s) 300, 413, 508, 522, 681
SchI GAGTC 1 cut(s) 412
ScrFI CCNGG 2 cut(s) 622, 633
SduI GDGCHC 2 cut(s) 387, 652
SfaNI GCATC 2 cut(s) 132, 594
Sfr274I CTCGAG 1 cut(s) 15
SinI GGWCC 2 cut(s) 508, 681
SlaI CTCGAG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 15
SmoI CTYRAG 1 cut(s) 15
SsiI CCGC 3 cut(s) 425, 584, 676
SspMI CTAG 2 cut(s) 215, 685
StyD4I CCNGG 2 cut(s) 620, 631
StyI CCWWGG 3 cut(s) 214, 579, 665
TaaI ACNGT 1 cut(s) 447
TaiI ACGT 2 cut(s) 194, 546
TaqI TCGA 4 cut(s) 16, 132, 288, 492
TaqII GACCGA 1 cut(s) 62
TfiI GAWTC 2 cut(s) 271, 469
TscAI CASTG 1 cut(s) 14
TseFI GTSAC 1 cut(s) 527
TseI GCWGC 1 cut(s) 673
Tsp45I GTSAC 1 cut(s) 527
TspDTI ATGAA 1 cut(s) 554
TspGWI ACGGA 1 cut(s) 161
TspRI CASTG 1 cut(s) 14
VneI GTGCAC 1 cut(s) 383
VpaK11BI GGWCC 2 cut(s) 508, 681
XceI RCATGY 1 cut(s) 569
XhoI CTCGAG 1 cut(s) 15
XmaJI CCTAGG 1 cut(s) 214
XspI CTAG 2 cut(s) 215, 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.