Rmu_sc0002841.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002841.1
OG0009740
Physical Location & Seq
Reverse (-)
20613 .. 21506
894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002841.1_g000002.1.cds

Sequence Viewer

Length: 771 bp
atgtcaatcaagaatgcaagagagctatgggtagcgctagaagagcgctttggcaatgtccaagatttcctcctccctgacttgaaggttcaatggaacaatctgagctttgctgatttcaagtctgtagctgaatataattcagaagctcttcgcatacagtccatgttgaggttttgtggacaacctgtcacagagcaagagctaattgagaaaactctctccaccttccctgttttagccattgtggtatcaaagcaataccgtactgaagtcaatgctggatggatcacgaggctcattggaactaagagcgttcatgaggcgaattataatgcatccaaaggagggcgtaaggagtggtaccctaagaatgagggacgtatgagcccatataaccgccctaaccaggaaggaaaccgcaagtttggtgtggatacacgtggtggtaatgccacacgtgggagagggggtcgtggtatccctagccgtggtggtggcgtcatgggtcgtggtggtggcaccaaccctcctagggaacgctcgcaacgtgcacaacgtgcacctcaattaaagggaggtaaccacaatgatgcaagcgagcaactagctgcaagatacagggcatatagggacctaagggagcaaaaagtgtaccttgcagaagaagaagaagaagaaaaagaaaaagatggtggagatgtcaatctcaccatagaggacttcaaagctgaagatgaagtgcacaaggaggccacagaccttgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

256

Amino Acids

28.91

Weight (kDa)

7.78

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 333
Acc65I GGTACC 1 cut(s) 363
AccB1I GGYRCC 2 cut(s) 363, 521
AciI CCGC 2 cut(s) 400, 421
AclWI GGATC 1 cut(s) 296
AcuI CTGAAG 2 cut(s) 291, 753
AcvI CACGTG 2 cut(s) 443, 461
AcyI GRCGYC 1 cut(s) 501
AdeI CACNNNGTG 2 cut(s) 446, 560
AfaI GTAC 3 cut(s) 268, 365, 656
AfeI AGCGCT 2 cut(s) 36, 47
AfiI CCNNNNNNNGG 6 cut(s) 171, 348, 409, 462, 491, 535
AflIII ACRYGT 2 cut(s) 440, 458
AgsI TTSAA 4 cut(s) 85, 92, 121, 727
AhdI GACNNNNNGTC 1 cut(s) 188
AjnI CCWGG 1 cut(s) 408
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
AluBI AGCT 7 cut(s) 25, 108, 131, 149, 205, 611, 731
AluI AGCT 7 cut(s) 25, 108, 131, 149, 205, 611, 731
Alw21I GWGCWC 3 cut(s) 556, 565, 747
Alw44I GTGCAC 3 cut(s) 552, 561, 743
AlwI GGATC 1 cut(s) 296
Aor51HI AGCGCT 2 cut(s) 36, 47
AoxI GGCC 1 cut(s) 753
ApaLI GTGCAC 3 cut(s) 552, 561, 743
ApeKI GCWGC 1 cut(s) 611
Asp700I GAANNNNTTC 1 cut(s) 150
Asp718I GGTACC 1 cut(s) 363
AspA2I CCTAGG 1 cut(s) 533
AspLEI GCGC 2 cut(s) 37, 48
AspS9I GGNCC 1 cut(s) 634
AsuHPI GGTGA 1 cut(s) 703
AvaII GGWCC 1 cut(s) 634
AvrII CCTAGG 1 cut(s) 533
AxyI CCTNAGG 1 cut(s) 638
BaeGI GKGCMC 3 cut(s) 556, 565, 747
BanI GGYRCC 2 cut(s) 363, 521
BanII GRGCYC 1 cut(s) 392
BauI CACGAG 1 cut(s) 292
BbrPI CACGTG 2 cut(s) 443, 461
Bbv12I GWGCWC 3 cut(s) 556, 565, 747
BbvI GCAGC 1 cut(s) 598
BccI CCATC 2 cut(s) 279, 686
BceAI ACGGC 1 cut(s) 474
BciT130I CCWGG 1 cut(s) 410
BciVI GTATCC 2 cut(s) 430, 491
BfaI CTAG 4 cut(s) 38, 486, 534, 608
BfmI CTRYAG 1 cut(s) 126
BfoI RGCGCY 2 cut(s) 38, 49
BfuI GTATCC 2 cut(s) 430, 491
BisI GCNGC 1 cut(s) 612
BlnI CCTAGG 1 cut(s) 533
BlsI GCNGC 1 cut(s) 613
Bme1390I CCNGG 1 cut(s) 410
Bme18I GGWCC 1 cut(s) 634
BmeRI GACNNNNNGTC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 634
BmiI GGNNCC 3 cut(s) 365, 523, 635
BmrFI CCNGG 1 cut(s) 410
BmsI GCATC 2 cut(s) 347, 583
BsaAI YACGTR 2 cut(s) 443, 461
BsaBI GATNNNNATC 1 cut(s) 705
BsaHI GRCGYC 1 cut(s) 501
BsaJI CCNNGG 2 cut(s) 490, 533
BsaXI ACNNNNNCTCC 4 cut(s) 457, 487, 514, 544
Bsc4I CCNNNNNNNGG 6 cut(s) 171, 348, 409, 462, 491, 535
Bse21I CCTNAGG 1 cut(s) 638
Bse3DI GCAATG 1 cut(s) 61
Bse8I GATNNNNATC 1 cut(s) 705
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 2 cut(s) 490, 533
BseGI GGATG 2 cut(s) 290, 338
BseJI GATNNNNATC 1 cut(s) 705
BseLI CCNNNNNNNGG 6 cut(s) 171, 348, 409, 462, 491, 535
BseMI GCAATG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 95
BseRI GAGGAG 1 cut(s) 62
BseSI GKGCMC 3 cut(s) 556, 565, 747
BseXI GCAGC 1 cut(s) 598
BshFI GGCC 1 cut(s) 755
BshNI GGYRCC 2 cut(s) 363, 521
BsiHKAI GWGCWC 3 cut(s) 556, 565, 747
BslFI GGGAC 2 cut(s) 393, 647
BslI CCNNNNNNNGG 6 cut(s) 171, 348, 409, 462, 491, 535
BsmFI GGGAC 2 cut(s) 393, 647
BsmI GAATGC 1 cut(s) 19
BsnI GGCC 1 cut(s) 755
Bsp1286I GDGCHC 4 cut(s) 392, 556, 565, 747
Bsp143I GATC 1 cut(s) 288
BspACI CCGC 2 cut(s) 400, 421
BspANI GGCC 1 cut(s) 755
BspCNI CTCAG 1 cut(s) 96
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 3 cut(s) 365, 523, 635
BspPI GGATC 1 cut(s) 296
BspQI GCTCTTC 2 cut(s) 36, 156
BspT107I GGYRCC 2 cut(s) 363, 521
BsrDI GCAATG 1 cut(s) 61
BssECI CCNNGG 2 cut(s) 490, 533
BssMI GATC 1 cut(s) 288
BssNI GRCGYC 1 cut(s) 501
BssSI CACGAG 1 cut(s) 292
BssT1I CCWWGG 1 cut(s) 533
Bst2BI CACGAG 1 cut(s) 292
Bst2UI CCWGG 1 cut(s) 410
Bst4CI ACNGT 2 cut(s) 162, 266
Bst6I CTCTTC 2 cut(s) 36, 156
BstACI GRCGYC 1 cut(s) 501
BstAPI GCANNNNNTGC 1 cut(s) 560
BstBAI YACGTR 2 cut(s) 443, 461
BstC8I GCNNGC 3 cut(s) 545, 598, 602
BstDEI CTNAG 4 cut(s) 104, 309, 369, 638
BstDSI CCRYGG 1 cut(s) 490
BstEII GGTNACC 1 cut(s) 581
BstF5I GGATG 2 cut(s) 290, 338
BstH2I RGCGCY 2 cut(s) 38, 49
BstHHI GCGC 2 cut(s) 37, 48
BstKTI GATC 1 cut(s) 291
BstMBI GATC 1 cut(s) 288
BstMWI GCNNNNNNNGC 2 cut(s) 43, 560
BstNI CCWGG 1 cut(s) 410
BstPI GGTNACC 1 cut(s) 581
BstSCI CCNGG 1 cut(s) 408
BstSFI CTRYAG 1 cut(s) 126
BstSLI GKGCMC 3 cut(s) 556, 565, 747
BstV1I GCAGC 1 cut(s) 598
Bsu36I CCTNAGG 1 cut(s) 638
BsuI GTATCC 2 cut(s) 430, 491
BsuRI GGCC 1 cut(s) 755
BtgI CCRYGG 1 cut(s) 490
BtsCI GGATG 2 cut(s) 290, 338
Cac8I GCNNGC 3 cut(s) 545, 598, 602
CciI TCATGA 1 cut(s) 319
CfoI GCGC 2 cut(s) 37, 48
Cfr13I GGNCC 1 cut(s) 634
CseI GACGC 1 cut(s) 490
Csp6I GTAC 3 cut(s) 267, 364, 655
CspCI CAANNNNNGTGG 1 cut(s) 745
CviAII CATG 3 cut(s) 166, 320, 505
CviQI GTAC 3 cut(s) 267, 364, 655
DdeI CTNAG 4 cut(s) 104, 309, 369, 638
DpnI GATC 1 cut(s) 290
DpnII GATC 1 cut(s) 288
DraIII CACNNNGTG 2 cut(s) 446, 560
DriI GACNNNNNGTC 1 cut(s) 188
Eam1104I CTCTTC 2 cut(s) 36, 156
Eam1105I GACNNNNNGTC 1 cut(s) 188
EarI CTCTTC 2 cut(s) 36, 156
Eco130I CCWWGG 1 cut(s) 533
Eco24I GRGCYC 1 cut(s) 392
Eco47I GGWCC 1 cut(s) 634
Eco47III AGCGCT 2 cut(s) 36, 47
Eco57I CTGAAG 2 cut(s) 291, 753
Eco72I CACGTG 2 cut(s) 443, 461
Eco81I CCTNAGG 1 cut(s) 638
Eco91I GGTNACC 1 cut(s) 581
EcoO109I RGGNCCY 1 cut(s) 634
EcoO65I GGTNACC 1 cut(s) 581
EcoRII CCWGG 1 cut(s) 408
EcoT14I CCWWGG 1 cut(s) 533
EcoT22I ATGCAT 1 cut(s) 340
EcoT38I GRGCYC 1 cut(s) 392
ErhI CCWWGG 1 cut(s) 533
FaeI CATG 3 cut(s) 169, 323, 508
FalI AAGNNNNNCTT 2 cut(s) 642, 674
FaqI GGGAC 2 cut(s) 393, 647
FatI CATG 3 cut(s) 165, 319, 504
Fnu4HI GCNGC 1 cut(s) 612
FokI GGATG 2 cut(s) 297, 325
FriOI GRGCYC 1 cut(s) 392
Fsp4HI GCNGC 1 cut(s) 612
FspBI CTAG 4 cut(s) 38, 486, 534, 608
GlaI GCGC 2 cut(s) 36, 47
GluI GCNGC 1 cut(s) 612
HaeII RGCGCY 2 cut(s) 38, 49
HaeIII GGCC 1 cut(s) 755
HgaI GACGC 1 cut(s) 490
HhaI GCGC 2 cut(s) 37, 48
Hin1I GRCGYC 1 cut(s) 501
Hin1II CATG 3 cut(s) 169, 323, 508
Hin6I GCGC 2 cut(s) 35, 46
HinP1I GCGC 2 cut(s) 35, 46
HphI GGTGA 1 cut(s) 703
Hpy166II GTNNAC 5 cut(s) 182, 554, 563, 655, 745
Hpy188I TCNGA 2 cut(s) 105, 145
Hpy188III TCNNGA 3 cut(s) 10, 292, 320
Hpy8I GTNNAC 5 cut(s) 182, 554, 563, 655, 745
HpyAV CCTTC 3 cut(s) 79, 238, 407
HpyCH4III ACNGT 2 cut(s) 162, 266
HpyCH4IV ACGT 5 cut(s) 382, 442, 460, 550, 559
HpyCH4V TGCA 8 cut(s) 17, 338, 554, 563, 596, 614, 662, 745
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 560
HpyF3I CTNAG 4 cut(s) 104, 309, 369, 638
HpySE526I ACGT 5 cut(s) 382, 442, 460, 550, 559
Hsp92I GRCGYC 1 cut(s) 501
Hsp92II CATG 3 cut(s) 169, 323, 508
HspAI GCGC 2 cut(s) 35, 46
KpnI GGTACC 1 cut(s) 367
Kzo9I GATC 1 cut(s) 288
LguI GCTCTTC 2 cut(s) 36, 156
LmnI GCTCC 1 cut(s) 643
LpnPI CCDG 7 cut(s) 90, 201, 246, 267, 395, 422, 607
Lsp1109I GCAGC 1 cut(s) 598
LweI GCATC 2 cut(s) 347, 583
MaeI CTAG 4 cut(s) 38, 486, 534, 608
MaeII ACGT 5 cut(s) 382, 442, 460, 550, 559
MaeIII GTNAC 2 cut(s) 190, 581
MalI GATC 1 cut(s) 290
MboI GATC 1 cut(s) 288
MboII GAAGA 8 cut(s) 53, 143, 677, 680, 683, 686, 689, 746
MhlI GDGCHC 4 cut(s) 392, 556, 565, 747
MluCI AATT 4 cut(s) 139, 207, 328, 569
Mph1103I ATGCAT 1 cut(s) 340
MroXI GAANNNNTTC 1 cut(s) 150
MseI TTAA 1 cut(s) 572
MslI CAYNNNNRTG 1 cut(s) 591
MspR9I CCNGG 1 cut(s) 410
Mva1269I GAATGC 1 cut(s) 19
MvaI CCWGG 1 cut(s) 410
MwoI GCNNNNNNNGC 2 cut(s) 43, 560
NdeII GATC 1 cut(s) 288
NlaIII CATG 3 cut(s) 169, 323, 508
NlaIV GGNNCC 3 cut(s) 365, 523, 635
NmuCI GTSAC 1 cut(s) 190
NsiI ATGCAT 1 cut(s) 340
PagI TCATGA 1 cut(s) 319
PciSI GCTCTTC 2 cut(s) 36, 156
PcsI WCGNNNNNNNCGW 2 cut(s) 547, 556
PctI GAATGC 1 cut(s) 19
PdmI GAANNNNTTC 1 cut(s) 150
PkrI GCNGC 1 cut(s) 613
PmaCI CACGTG 2 cut(s) 443, 461
PmlI CACGTG 2 cut(s) 443, 461
Ppu21I YACGTR 2 cut(s) 443, 461
PpuMI RGGWCCY 1 cut(s) 634
PsiI TTATAA 1 cut(s) 333
Psp5II RGGWCCY 1 cut(s) 634
Psp6I CCWGG 1 cut(s) 408
PspCI CACGTG 2 cut(s) 443, 461
PspEI GGTNACC 1 cut(s) 581
PspGI CCWGG 1 cut(s) 408
PspN4I GGNNCC 3 cut(s) 365, 523, 635
PspPI GGNCC 1 cut(s) 634
PspPPI RGGWCCY 1 cut(s) 634
RsaI GTAC 3 cut(s) 268, 365, 656
RsaNI GTAC 3 cut(s) 267, 364, 655
RseI CAYNNNNRTG 1 cut(s) 591
SapI GCTCTTC 2 cut(s) 36, 156
SaqAI TTAA 1 cut(s) 572
SatI GCNGC 1 cut(s) 612
Sau3AI GATC 1 cut(s) 288
Sau96I GGNCC 1 cut(s) 634
ScrFI CCNGG 1 cut(s) 410
SduI GDGCHC 4 cut(s) 392, 556, 565, 747
SfaNI GCATC 2 cut(s) 347, 583
SfcI CTRYAG 1 cut(s) 126
SinI GGWCC 1 cut(s) 634
SmiMI CAYNNNNRTG 1 cut(s) 591
Sse9I AATT 4 cut(s) 139, 207, 328, 569
SsiI CCGC 2 cut(s) 400, 421
SspMI CTAG 4 cut(s) 38, 486, 534, 608
StyD4I CCNGG 1 cut(s) 408
StyI CCWWGG 1 cut(s) 533
TaaI ACNGT 2 cut(s) 162, 266
TaiI ACGT 5 cut(s) 385, 445, 463, 553, 562
TasI AATT 4 cut(s) 139, 207, 328, 569
Tru1I TTAA 1 cut(s) 572
Tru9I TTAA 1 cut(s) 572
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 611
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 2 cut(s) 308, 753
VneI GTGCAC 3 cut(s) 552, 561, 743
VpaK11BI GGWCC 1 cut(s) 634
XmaJI CCTAGG 1 cut(s) 533
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 4 cut(s) 38, 486, 534, 608
Zsp2I ATGCAT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.