Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0009740

Physical Location & Seq

Genomic Coordinates Reverse (-)

53851644 .. 53851940

Gene Structure 297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG347700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCAGAGCCGCCGAGCACCAAGCTCTGGATCCGACGGCAGTCCACTCTTCAAAGAGTTCTTAGATCTGTCCGAGGAGGCGTTCGGCCAGGTGAGGTGGGTTCAGACGGAGAGATCCTGCGACGGGATCGTGACCGTCCATTTTGACGATCTCAGGCATGCAGAGAAGGCCTTGGCAGAGAAGAGGTGGCCAAGGTGTGTTACTGTGTTTGGGTATGAGATTACTCTTGGATTTGGGAGTGTGAATTTGGAGAGGTGGAGGAATTTTGTGGGGAGGATTGGCTCTAGATTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

98

Amino Acids

11.21

Weight (kDa)

7.84

Isoelectric Point (pI)

66.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009740)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0428301
rosa_laevigata	RLG00000003070 RLG00000007693 RLG00000026855
rosa_multiflora	Rmu_sc0000745.1_g000003 Rmu_sc0001524.1_g000052 Rmu_sc0002841.1_g000002 Rmu_sc0003153.1_g000010 Rmu_sc0003413.1_g000025 Rmu_sc0012746.1_g000019 Rmu_sc0020260.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186450
rosa_samantha	Rh1CG087900 Rh2AG101200 Rh2AG120600 Rh3AG298400 Rh3BG370900 Rh5AG245100 Rh5DG552400 Rh6CG347700 Rh7CG179600 Rh7CG189200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	26
AciI	CCGC	1 cut(s)	10
AclWI	GGATC	4 cut(s)	24, 37, 108, 134
AcoI	YGGCCR	2 cut(s)	85, 188
AcsI	RAATTY	2 cut(s)	244, 262
AfiI	CCNNNNNNNGG	2 cut(s)	26, 123
AgsI	TTSAA	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	1 cut(s)	24
AluI	AGCT	1 cut(s)	24
Alw21I	GWGCWC	1 cut(s)	19
AlwI	GGATC	4 cut(s)	24, 37, 108, 134
AoxI	GGCC	3 cut(s)	85, 168, 188
ApoI	RAATTY	2 cut(s)	244, 262
AsuHPI	GGTGA	1 cut(s)	103
BalI	TGGCCA	1 cut(s)	190
BamHI	GGATCC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	19
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	89
BfaI	CTAG	1 cut(s)	285
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	1 cut(s)	10
BlsI	GCNGC	1 cut(s)	11
Bme1390I	CCNGG	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	89
BoxI	GACNNNNGTC	1 cut(s)	39
BsaJI	CCNNGG	3 cut(s)	72, 171, 191
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 123
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	3 cut(s)	72, 171, 191
BseLI	CCNNNNNNNGG	2 cut(s)	26, 123
BseMII	CTCAG	1 cut(s)	166
BseRI	GAGGAG	1 cut(s)	89
BshFI	GGCC	3 cut(s)	87, 170, 190
BsiHKAI	GWGCWC	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	26, 123
BsnI	GGCC	3 cut(s)	87, 170, 190
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	5 cut(s)	29, 64, 113, 126, 148
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	3 cut(s)	87, 170, 190
BspCNI	CTCAG	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	31
BspPI	GGATC	4 cut(s)	24, 37, 108, 134
BssECI	CCNNGG	3 cut(s)	72, 171, 191
BssMI	GATC	5 cut(s)	29, 64, 113, 126, 148
BssT1I	CCWWGG	2 cut(s)	171, 191
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	2 cut(s)	136, 205
Bst6I	CTCTTC	2 cut(s)	53, 176
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	2 cut(s)	61, 152
BstKTI	GATC	5 cut(s)	32, 67, 116, 129, 151
BstMBI	GATC	5 cut(s)	29, 64, 113, 126, 148
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	161
BstPAI	GACNNNNGTC	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	87
BstX2I	RGATCY	3 cut(s)	29, 64, 113
BstYI	RGATCY	3 cut(s)	29, 64, 113
BsuRI	GGCC	3 cut(s)	87, 170, 190
Cac8I	GCNNGC	1 cut(s)	159
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	6 cut(s)	9, 24, 87, 170, 190, 282
CviKI_1	RGCY	6 cut(s)	9, 24, 87, 170, 190, 282
DdeI	CTNAG	2 cut(s)	61, 152
DpnI	GATC	5 cut(s)	31, 66, 115, 128, 150
DpnII	GATC	5 cut(s)	29, 64, 113, 126, 148
EaeI	YGGCCR	2 cut(s)	85, 188
Eam1104I	CTCTTC	2 cut(s)	53, 176
EarI	CTCTTC	2 cut(s)	53, 176
Eco130I	CCWWGG	2 cut(s)	171, 191
Eco147I	AGGCCT	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	87
EcoT14I	CCWWGG	2 cut(s)	171, 191
ErhI	CCWWGG	2 cut(s)	171, 191
FaeI	CATG	1 cut(s)	161
FaiI	YATR	2 cut(s)	159, 216
FatI	CATG	1 cut(s)	157
Fnu4HI	GCNGC	1 cut(s)	10
Fsp4HI	GCNGC	1 cut(s)	10
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	1 cut(s)	10
HaeIII	GGCC	3 cut(s)	87, 170, 190
Hin1II	CATG	1 cut(s)	161
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	3 cut(s)	34, 73, 105
Hpy188III	TCNNGA	3 cut(s)	27, 130, 285
Hpy8I	GTNNAC	1 cut(s)	44
Hpy99I	CGWCG	2 cut(s)	38, 125
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	2 cut(s)	136, 205
HpyCH4V	TGCA	2 cut(s)	4, 161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	2 cut(s)	61, 152
Hsp92II	CATG	1 cut(s)	161
Kzo9I	GATC	5 cut(s)	29, 64, 113, 126, 148
LpnPI	CCDG	5 cut(s)	12, 74, 101, 130, 139
MaeI	CTAG	1 cut(s)	285
MaeIII	GTNAC	2 cut(s)	130, 199
MalI	GATC	5 cut(s)	31, 66, 115, 128, 150
MboI	GATC	5 cut(s)	29, 64, 113, 126, 148
MboII	GAAGA	2 cut(s)	40, 193
MflI	RGATCY	3 cut(s)	29, 64, 113
MhlI	GDGCHC	1 cut(s)	19
MlsI	TGGCCA	1 cut(s)	190
MluCI	AATT	3 cut(s)	244, 262, 292
MluNI	TGGCCA	1 cut(s)	190
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	7 cut(s)	67, 70, 87, 177, 246, 252, 267
Mox20I	TGGCCA	1 cut(s)	190
MscI	TGGCCA	1 cut(s)	190
MseI	TTAA	2 cut(s)	290, 295
Msp20I	TGGCCA	1 cut(s)	190
MspR9I	CCNGG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeII	GATC	5 cut(s)	29, 64, 113, 126, 148
NlaIII	CATG	1 cut(s)	161
NlaIV	GGNNCC	1 cut(s)	31
NmeAIII	GCCGAG	1 cut(s)	38
NmuCI	GTSAC	1 cut(s)	130
NspI	RCATGY	1 cut(s)	161
PaeI	GCATGC	1 cut(s)	161
PceI	AGGCCT	1 cut(s)	170
PflMI	CCANNNNNTGG	1 cut(s)	26
PkrI	GCNGC	1 cut(s)	11
PshAI	GACNNNNGTC	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	31
PsuI	RGATCY	3 cut(s)	29, 64, 113
SaqAI	TTAA	2 cut(s)	290, 295
SatI	GCNGC	1 cut(s)	10
Sau3AI	GATC	5 cut(s)	29, 64, 113, 126, 148
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	6 cut(s)	26, 93, 98, 188, 197, 257
SphI	GCATGC	1 cut(s)	161
Sse9I	AATT	3 cut(s)	244, 262, 292
SseBI	AGGCCT	1 cut(s)	170
SsiI	CCGC	1 cut(s)	10
SspMI	CTAG	1 cut(s)	285
StuI	AGGCCT	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	87
StyI	CCWWGG	2 cut(s)	171, 191
TaaI	ACNGT	2 cut(s)	136, 205
TasI	AATT	3 cut(s)	244, 262, 292
TauI	GCSGC	1 cut(s)	12
Tru1I	TTAA	2 cut(s)	290, 295
Tru9I	TTAA	2 cut(s)	290, 295
TseFI	GTSAC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	130
TspGWI	ACGGA	1 cut(s)	122
Van91I	CCANNNNNTGG	1 cut(s)	26
XapI	RAATTY	2 cut(s)	244, 262
XbaI	TCTAGA	1 cut(s)	284
XceI	RCATGY	1 cut(s)	161
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.