RchiOBHm_Chr5g0002191

Belongs to the peptidase S8 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
1269671 .. 1271733
2063 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28357

Sequence Viewer

Length: 1164 bp
ATGAAACAATATTTCAGTGAAGTTTCGAAGGCTCATGTAAAGCAATTAGAGGATTCTCATGATCAACTTCTACAGAGCAATCTTGAGACCGGAAGCTACAGCAAGCTTTACAGCTTTAAACAAGTTGCAAACGGCTTTGCTGTCCATACAACCCCTTCTCAGGTTGAAAAGCTCAAGTATGCTCCAGCAGTAAAGCTGGTTGAGAGAGATAGAGGAGCAAAGTTGATGACAACGTACACTCCTCGCTTCCTTGAGTTACCTGAAGCAGTATGGACACAAGAAGGAGCCCAACGTAATGCTGGCGAAGGAATTGTGATTGGTTTTACTGGTCCTCTATTCCCAGCAACGTCATGCAATGGTAAAATTGTTTCAGCTAAGTTTTTCTCAGCTGGGGCTCGAGCCATTGCTACTCTCAACGGTTCGGTGGATTTTCTTTCACCCTTCGACGCAGATGGACATGGCAGTCATGTGGCATCAGTTGCTGCTGGAAATGCTGGAGTTCCTGTGGTTGTGAATGGCTTCAGTTATGGACGAGCTGGTGGAATGGCACCACGTGCGCGTGACAGGATTGCTGTATATAAAGCTGTGTATCCTACAGTAGGAACTTTGGCAGATGTAGTTTCTGCAATTGATGAAGCAATTCGAGATGGAGTGGATGTCCTAGCACTCTCTGTCGGACCAGATGAACCGCCATTGGGTAAAGTGACCTTCTTAAGCATGTTTGATGTGTTCATGCTGTATGCTCGACGAGCTGGGGTCTTCGTGGTGCAAGCAGCAAGTAATCGAGGGCCAGACCCTTCAAGACCAACTTTTGGATATAGGTTACTTCAACATAGGTTGGTTTTGGCCAAGGATGCAATTAATCCAATTGGGTCATTCCCAAGAACCTATGTTGAAGAGTGCCAATTTCCACAAGCATTGGATACTAGGTTAGTTATAGGTAGTATTGTCATCTGCACATTCTCGGATGGATTCTATAACGGGAGATCCACCCTTAATGCCATCGTCAACACGGCAAGAGCTCTCGGATTTATGGGTTTTGTTCTTGTTGCAAATCCAGCCTATGGTGACTTCATTGCAGAGCCTGTTCCTTTTGCTGTTTCTGGCATTTTGGTCCCGAGTGTAACCAATTCCCAGGTACATATCACAAAGTCATATTCATAA

Protein Analysis

387

Amino Acids

41.49

Weight (kDa)

8.62

Isoelectric Point (pI)

27.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I9 PF05922 13 - 75 3.7e-11 Peptidase inhibitor I9
Peptidase_S8 PF00082 149 - 266 1.8e-10 Subtilase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 462
AccB1I GGYRCC 1 cut(s) 547
AccB7I CCANNNNNTGG 2 cut(s) 812, 1064
AccII CGCG 1 cut(s) 559
AciI CCGC 1 cut(s) 689
AclWI GGATC 1 cut(s) 981
AcoI YGGCCR 1 cut(s) 846
AcuI CTGAAG 2 cut(s) 282, 505
AcvI CACGTG 1 cut(s) 554
AdeI CACNNNGTG 1 cut(s) 554
AfaI GTAC 2 cut(s) 236, 1140
AfiI CCNNNNNNNGG 5 cut(s) 160, 599, 695, 812, 1064
AflII CTTAAG 1 cut(s) 712
AgsI TTSAA 4 cut(s) 167, 801, 830, 896
AjnI CCWGG 1 cut(s) 1134
Alw21I GWGCWC 1 cut(s) 1024
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 1 cut(s) 981
AlwNI CAGNNNCTG 2 cut(s) 482, 1085
Ama87I CYCGRG 2 cut(s) 396, 1117
AoxI GGCC 2 cut(s) 788, 846
ApeKI GCWGC 2 cut(s) 482, 773
AseI ATTAAT 1 cut(s) 861
Asp700I GAANNNNTTC 2 cut(s) 518, 639
AspLEI GCGC 1 cut(s) 559
AspS9I GGNCC 4 cut(s) 329, 677, 788, 1114
AsuHPI GGTGA 2 cut(s) 429, 1079
AsuII TTCGAA 1 cut(s) 26
AvaI CYCGRG 2 cut(s) 396, 1117
AvaII GGWCC 3 cut(s) 329, 677, 1114
BalI TGGCCA 1 cut(s) 848
BanI GGYRCC 1 cut(s) 547
BanII GRGCYC 3 cut(s) 289, 397, 1024
BbrPI CACGTG 1 cut(s) 554
BbsI GAAGAC 1 cut(s) 751
Bbv12I GWGCWC 1 cut(s) 1024
BbvI GCAGC 2 cut(s) 469, 785
BccI CCATC 4 cut(s) 446, 641, 962, 1010
BceAI ACGGC 2 cut(s) 148, 1029
BciT130I CCWGG 1 cut(s) 1136
BciVI GTATCC 2 cut(s) 600, 916
BclI TGATCA 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 2 cut(s) 662, 927
BfmI CTRYAG 3 cut(s) 71, 97, 594
BfrI CTTAAG 1 cut(s) 712
BfuI GTATCC 2 cut(s) 600, 916
BisI GCNGC 2 cut(s) 483, 774
BlsI GCNGC 2 cut(s) 484, 775
Bme1390I CCNGG 1 cut(s) 1136
Bme18I GGWCC 3 cut(s) 329, 677, 1114
BmeT110I CYCGRG 2 cut(s) 396, 1117
BmgT120I GGNCC 4 cut(s) 329, 677, 788, 1114
BmiI GGNNCC 3 cut(s) 286, 549, 1116
BmrFI CCNGG 1 cut(s) 1136
BmsI GCATC 2 cut(s) 482, 844
BpiI GAAGAC 1 cut(s) 751
BpmI CTGGAG 2 cut(s) 168, 516
Bpu14I TTCGAA 1 cut(s) 26
BpuEI CTTGAG 3 cut(s) 104, 158, 272
BsaAI YACGTR 1 cut(s) 554
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 849, 1134
BsaWI WCCGGW 1 cut(s) 89
BsaXI ACNNNNNCTCC 6 cut(s) 223, 253, 489, 519, 642, 672
Bsc4I CCNNNNNNNGG 5 cut(s) 160, 599, 695, 812, 1064
Bse1I ACTGG 1 cut(s) 331
Bse3DI GCAATG 3 cut(s) 361, 402, 1074
BseBI CCWGG 1 cut(s) 1136
BseDI CCNNGG 2 cut(s) 849, 1134
BseGI GGATG 3 cut(s) 661, 859, 973
BseLI CCNNNNNNNGG 5 cut(s) 160, 599, 695, 812, 1064
BseMI GCAATG 3 cut(s) 361, 402, 1074
BseMII CTCAG 2 cut(s) 173, 399
BseNI ACTGG 1 cut(s) 331
BseRI GAGGAG 2 cut(s) 228, 231
BseXI GCAGC 2 cut(s) 469, 785
BseYI CCCAGC 3 cut(s) 340, 389, 752
BsgI GTGCAG 1 cut(s) 940
Bsh1236I CGCG 1 cut(s) 559
BshFI GGCC 2 cut(s) 790, 848
BshNI GGYRCC 1 cut(s) 547
BsiHKAI GWGCWC 1 cut(s) 1024
BsiHKCI CYCGRG 2 cut(s) 396, 1117
BsiSI CCGG 1 cut(s) 90
BslFI GGGAC 1 cut(s) 1100
BslI CCNNNNNNNGG 5 cut(s) 160, 599, 695, 812, 1064
BsmAI GTCTC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 1100
BsnI GGCC 2 cut(s) 790, 848
Bso31I GGTCTC 1 cut(s) 80
BsoBI CYCGRG 2 cut(s) 396, 1117
Bsp119I TTCGAA 1 cut(s) 26
Bsp1286I GDGCHC 3 cut(s) 289, 397, 1024
Bsp143I GATC 2 cut(s) 61, 986
BspACI CCGC 1 cut(s) 689
BspANI GGCC 2 cut(s) 790, 848
BspCNI CTCAG 2 cut(s) 172, 398
BspFNI CGCG 1 cut(s) 559
BspHI TCATGA 1 cut(s) 58
BspLI GGNNCC 3 cut(s) 286, 549, 1116
BspPI GGATC 1 cut(s) 981
BspT104I TTCGAA 1 cut(s) 26
BspT107I GGYRCC 1 cut(s) 547
BspTI CTTAAG 1 cut(s) 712
BspTNI GGTCTC 1 cut(s) 80
BsrDI GCAATG 3 cut(s) 361, 402, 1074
BsrI ACTGG 1 cut(s) 331
BssECI CCNNGG 2 cut(s) 849, 1134
BssMI GATC 2 cut(s) 61, 986
BssT1I CCWWGG 1 cut(s) 849
Bst2UI CCWGG 1 cut(s) 1136
Bst4CI ACNGT 2 cut(s) 419, 598
Bst6I CTCTTC 1 cut(s) 891
BstAFI CTTAAG 1 cut(s) 712
BstAPI GCANNNNNTGC 2 cut(s) 479, 554
BstBAI YACGTR 1 cut(s) 554
BstBI TTCGAA 1 cut(s) 26
BstC8I GCNNGC 3 cut(s) 104, 301, 771
BstDEI CTNAG 3 cut(s) 159, 375, 385
BstENI CCTNNNNNAGG 1 cut(s) 597
BstF5I GGATG 3 cut(s) 661, 859, 973
BstFNI CGCG 1 cut(s) 559
BstHHI GCGC 1 cut(s) 559
BstKTI GATC 2 cut(s) 64, 989
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 2 cut(s) 61, 986
BstMWI GCNNNNNNNGC 6 cut(s) 479, 491, 554, 749, 854, 1058
BstNI CCWGG 1 cut(s) 1136
BstNSI RCATGY 1 cut(s) 721
BstSCI CCNGG 1 cut(s) 1134
BstSFI CTRYAG 3 cut(s) 71, 97, 594
BstUI CGCG 1 cut(s) 559
BstV1I GCAGC 2 cut(s) 469, 785
BstV2I GAAGAC 1 cut(s) 751
BstX2I RGATCY 1 cut(s) 986
BstYI RGATCY 1 cut(s) 986
BsuI GTATCC 2 cut(s) 600, 916
BsuRI GGCC 2 cut(s) 790, 848
BtsCI GGATG 3 cut(s) 661, 859, 973
BtsIMutI CAGTG 1 cut(s) 22
Cac8I GCNNGC 3 cut(s) 104, 301, 771
CaiI CAGNNNCTG 2 cut(s) 482, 1085
CciI TCATGA 1 cut(s) 58
CfoI GCGC 1 cut(s) 559
Cfr13I GGNCC 4 cut(s) 329, 677, 788, 1114
CseI GACGC 1 cut(s) 455
Csp6I GTAC 2 cut(s) 235, 1139
CspCI CAANNNNNGTGG 2 cut(s) 900, 935
CviAII CATG 7 cut(s) 35, 59, 351, 458, 467, 718, 733
CviQI GTAC 2 cut(s) 235, 1139
DdeI CTNAG 3 cut(s) 159, 375, 385
DpnI GATC 2 cut(s) 63, 988
DpnII GATC 2 cut(s) 61, 986
DraI TTTAAA 1 cut(s) 118
DraIII CACNNNGTG 1 cut(s) 554
DrdI GACNNNNNNGTC 1 cut(s) 462
DseDI GACNNNNNNGTC 1 cut(s) 462
EaeI YGGCCR 1 cut(s) 846
Eam1104I CTCTTC 1 cut(s) 891
EarI CTCTTC 1 cut(s) 891
Ecl136II GAGCTC 1 cut(s) 1022
Eco130I CCWWGG 1 cut(s) 849
Eco24I GRGCYC 3 cut(s) 289, 397, 1024
Eco31I GGTCTC 1 cut(s) 80
Eco47I GGWCC 3 cut(s) 329, 677, 1114
Eco53kI GAGCTC 1 cut(s) 1022
Eco57I CTGAAG 2 cut(s) 282, 505
Eco72I CACGTG 1 cut(s) 554
Eco88I CYCGRG 2 cut(s) 396, 1117
EcoICRI GAGCTC 1 cut(s) 1022
EcoNI CCTNNNNNAGG 1 cut(s) 597
EcoRII CCWGG 1 cut(s) 1134
EcoT14I CCWWGG 1 cut(s) 849
EcoT38I GRGCYC 3 cut(s) 289, 397, 1024
ErhI CCWWGG 1 cut(s) 849
FaeI CATG 7 cut(s) 38, 62, 354, 461, 470, 721, 736
FalI AAGNNNNNCTT 2 cut(s) 793, 825
FaqI GGGAC 1 cut(s) 1100
FatI CATG 7 cut(s) 34, 58, 350, 457, 466, 717, 732
FbaI TGATCA 1 cut(s) 61
Fnu4HI GCNGC 2 cut(s) 483, 774
FokI GGATG 3 cut(s) 668, 866, 980
FriOI GRGCYC 3 cut(s) 289, 397, 1024
Fsp4HI GCNGC 2 cut(s) 483, 774
FspBI CTAG 2 cut(s) 662, 927
GlaI GCGC 1 cut(s) 558
GluI GCNGC 2 cut(s) 483, 774
GsaI CCCAGC 3 cut(s) 344, 393, 756
GsuI CTGGAG 2 cut(s) 168, 516
HaeIII GGCC 2 cut(s) 790, 848
HapII CCGG 1 cut(s) 90
HgaI GACGC 1 cut(s) 455
HhaI GCGC 1 cut(s) 559
Hin1II CATG 7 cut(s) 38, 62, 354, 461, 470, 721, 736
Hin6I GCGC 1 cut(s) 557
HinP1I GCGC 1 cut(s) 557
HincII GTYRAC 1 cut(s) 1009
HindII GTYRAC 1 cut(s) 1009
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 2 cut(s) 53, 972
HpaII CCGG 1 cut(s) 90
HphI GGTGA 2 cut(s) 429, 1079
Hpy166II GTNNAC 2 cut(s) 237, 1009
Hpy188I TCNGA 3 cut(s) 677, 967, 1028
Hpy188III TCNNGA 5 cut(s) 59, 83, 644, 801, 1117
Hpy8I GTNNAC 2 cut(s) 237, 1009
Hpy99I CGWCG 2 cut(s) 449, 750
HpyAV CCTTC 7 cut(s) 22, 165, 275, 299, 451, 718, 807
HpyCH4III ACNGT 2 cut(s) 419, 598
HpyCH4IV ACGT 4 cut(s) 233, 292, 347, 553
HpyCH4V TGCA 8 cut(s) 128, 354, 626, 769, 857, 957, 1052, 1079
HpyF10VI GCNNNNNNNGC 6 cut(s) 479, 491, 554, 749, 854, 1058
HpyF3I CTNAG 3 cut(s) 159, 375, 385
HpySE526I ACGT 4 cut(s) 233, 292, 347, 553
Hsp92II CATG 7 cut(s) 38, 62, 354, 461, 470, 721, 736
HspAI GCGC 1 cut(s) 557
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 2 cut(s) 61, 986
LmnI GCTCC 3 cut(s) 187, 215, 284
Lsp1109I GCAGC 2 cut(s) 469, 785
LweI GCATC 2 cut(s) 482, 844
MaeI CTAG 2 cut(s) 662, 927
MaeII ACGT 4 cut(s) 233, 292, 347, 553
MaeIII GTNAC 6 cut(s) 255, 560, 703, 822, 1067, 1123
MalI GATC 2 cut(s) 63, 988
MboI GATC 2 cut(s) 61, 986
MboII GAAGA 2 cut(s) 751, 908
MfeI CAATTG 2 cut(s) 627, 867
MflI RGATCY 1 cut(s) 986
MhlI GDGCHC 3 cut(s) 289, 397, 1024
MlsI TGGCCA 1 cut(s) 848
MluCI AATT 9 cut(s) 44, 309, 363, 627, 639, 858, 867, 905, 1129
MluNI TGGCCA 1 cut(s) 848
MmeI TCCRAC 1 cut(s) 655
MnlI CCTC 5 cut(s) 43, 206, 252, 342, 779
Mox20I TGGCCA 1 cut(s) 848
MroXI GAANNNNTTC 2 cut(s) 518, 639
MscI TGGCCA 1 cut(s) 848
MseI TTAA 4 cut(s) 117, 713, 861, 996
Msp20I TGGCCA 1 cut(s) 848
MspA1I CMGCKG 1 cut(s) 389
MspCI CTTAAG 1 cut(s) 712
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 1136
MunI CAATTG 2 cut(s) 627, 867
MvaI CCWGG 1 cut(s) 1136
MvnI CGCG 1 cut(s) 559
MwoI GCNNNNNNNGC 6 cut(s) 479, 491, 554, 749, 854, 1058
NdeII GATC 2 cut(s) 61, 986
NlaIII CATG 7 cut(s) 38, 62, 354, 461, 470, 721, 736
NlaIV GGNNCC 3 cut(s) 286, 549, 1116
NmuCI GTSAC 3 cut(s) 560, 703, 1067
NspI RCATGY 1 cut(s) 721
NspV TTCGAA 1 cut(s) 26
PaeR7I CTCGAG 1 cut(s) 396
PagI TCATGA 1 cut(s) 58
PdmI GAANNNNTTC 2 cut(s) 518, 639
PfeI GAWTC 2 cut(s) 53, 972
PflMI CCANNNNNTGG 2 cut(s) 812, 1064
PkrI GCNGC 2 cut(s) 484, 775
PmaCI CACGTG 1 cut(s) 554
PmlI CACGTG 1 cut(s) 554
Ppu21I YACGTR 1 cut(s) 554
PshBI ATTAAT 1 cut(s) 861
Psp124BI GAGCTC 1 cut(s) 1024
Psp6I CCWGG 1 cut(s) 1134
PspCI CACGTG 1 cut(s) 554
PspFI CCCAGC 3 cut(s) 340, 389, 752
PspGI CCWGG 1 cut(s) 1134
PspN4I GGNNCC 3 cut(s) 286, 549, 1116
PspPI GGNCC 4 cut(s) 329, 677, 788, 1114
PspXI VCTCGAGB 1 cut(s) 396
PstNI CAGNNNCTG 2 cut(s) 482, 1085
PsuI RGATCY 1 cut(s) 986
PvuII CAGCTG 1 cut(s) 389
RsaI GTAC 2 cut(s) 236, 1140
RsaNI GTAC 2 cut(s) 235, 1139
SacI GAGCTC 1 cut(s) 1024
SaqAI TTAA 4 cut(s) 117, 713, 861, 996
SatI GCNGC 2 cut(s) 483, 774
Sau3AI GATC 2 cut(s) 61, 986
Sau96I GGNCC 4 cut(s) 329, 677, 788, 1114
ScrFI CCNGG 1 cut(s) 1136
SduI GDGCHC 3 cut(s) 289, 397, 1024
SfaNI GCATC 2 cut(s) 482, 844
SfcI CTRYAG 3 cut(s) 71, 97, 594
Sfr274I CTCGAG 1 cut(s) 396
SfuI TTCGAA 1 cut(s) 26
SinI GGWCC 3 cut(s) 329, 677, 1114
SlaI CTCGAG 1 cut(s) 396
SmlI CTYRAG 5 cut(s) 83, 173, 251, 396, 712
SmoI CTYRAG 5 cut(s) 83, 173, 251, 396, 712
Sse9I AATT 9 cut(s) 44, 309, 363, 627, 639, 858, 867, 905, 1129
SsiI CCGC 1 cut(s) 689
SspI AATATT 1 cut(s) 11
SspMI CTAG 2 cut(s) 662, 927
SstI GAGCTC 1 cut(s) 1024
StyD4I CCNGG 1 cut(s) 1134
StyI CCWWGG 1 cut(s) 849
TaaI ACNGT 2 cut(s) 419, 598
TaiI ACGT 4 cut(s) 236, 295, 350, 556
TaqI TCGA 6 cut(s) 26, 397, 444, 643, 745, 784
TasI AATT 9 cut(s) 44, 309, 363, 627, 639, 858, 867, 905, 1129
TfiI GAWTC 2 cut(s) 53, 972
Tru1I TTAA 4 cut(s) 117, 713, 861, 996
Tru9I TTAA 4 cut(s) 117, 713, 861, 996
TscAI CASTG 1 cut(s) 22
TseFI GTSAC 3 cut(s) 560, 703, 1067
TseI GCWGC 2 cut(s) 482, 773
Tsp45I GTSAC 3 cut(s) 560, 703, 1067
TspDTI ATGAA 6 cut(s) 17, 648, 699, 721, 1063, 1149
TspRI CASTG 1 cut(s) 22
Van91I CCANNNNNTGG 2 cut(s) 812, 1064
Vha464I CTTAAG 1 cut(s) 712
VpaK11BI GGWCC 3 cut(s) 329, 677, 1114
VspI ATTAAT 1 cut(s) 861
XagI CCTNNNNNAGG 1 cut(s) 597
XceI RCATGY 1 cut(s) 721
XcmI CCANNNNNNNNNTGG 1 cut(s) 296
XhoI CTCGAG 1 cut(s) 396
XmnI GAANNNNTTC 2 cut(s) 518, 639
XspI CTAG 2 cut(s) 662, 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.