Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006269

Physical Location & Seq

Genomic Coordinates Forward (+)

1377965 .. 1381721

Gene Structure 3757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG018000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2523 bp

ATGGTAACGGTTATCCCAAAAAAGGCTGCGCTTCTCCCTTCTGTGATGTTTACTGGTTTTTCAGCAGAAGATCGAGCTATATACTTGGTTTTAATGGAAGGAGACTCACTTGCATTTAATGGAGGCTCTCCATCTTCACGCCTCAACCTAAACAGTGAAATTTCGAAGGCTCATGCAAAGCAATTGGAGGATTCTCATGATCAACTTCTACAGAGCAATCTTGAGACTGGAAGCTACAGCAAGCTTTACAGCTTTAAACACGTTGCAAACGGCTTTGCTGTCCATACAACCCCTTCACAGGTTGAAAAGCTGAAATATGCTCCAAGAGTAAAGCTGGTTGAGAGAGATAGAGGAGCAAAGTTGATGACAACGTACACTCCTCGCTTCCTTGAGTTACCTGAAGGAGTATGGACGCAAGAAGGAGGCCAACGTAATGCTGGTGAAGGAATTGTGATTGGTTTTGTGGATTCTGGCATCAACCCTGCACATCTAAGTTTTGCTTATAATCCTCTGAGCCCTTTCACCTCTAATATTTCTCATTTTTTGGGTGCTTGTGAGACTGGTCCTCTATTCCCAGCAACTTCATGCAATGGTAAAATAGTTTCAGCCAAGTTTTTCTCAGCTGGGGCTCTAGCCATTGCTACTCTCAACAGTTCAGTGGATTTTCTTTCACCCTTTGATGCAGATGGACATGGCAGTCATGTGGCATCGGTTGCTGCTGGAAATGCTGGAGTTCCTGTGGTTGTGAATGGCTTCTATTATGGACAAGCTAGTGGAATGGCACCACGTGCGCGGATTGCTGTATATAAAGCTGTGTATCCTACAGTAGGAACTTTGGCAGATGTAGTTTCTGCAATTGATGAAGCAATTCGAGATGGAGTGGATGTCCTAGCACTCTCTGTCGGACCAGATGAACCACCATTGGGTAGAGTGACCTTCTTAAGCATGTTTGATGTGTTCATGTTATATGCTCGACGAGCTGGGGTTTTTGTGGTGCAAGCAGCAGGTAATCGAGGGCCAGACCCTTCAAGTGTAGTGTCTTACAGCCCTTGGGCGGTAGGTGTAGCTTCTTCCGGCACAGATAGAATTTATCCTTCTTCTATTGTTCTTGGAAATGGAGCAAGAATTGAAGGTGTGGGATTATCAGGACCAACTTTTTTATTTGGATATAGGTTACTTCAACATAGGTTGGTTTTGGCCAAGGATGCAATTAATCCAATTGAGTCATTCCCAAGAACCCCACCCTATGTTGAAGAGTGCCAATTTCCACAAGCATTGGATCCTAGGTTAGTTATAGGTAGTATTGTCATCTGCACATTCTCGGAGGGATTCTATAACAGGACATCCACCCTTAATGCCATCATCAACACGGCAAGAGCTCTCGGATTTATGGGTTTTGTTCTTGTTGCAAATCCAGCCTATGGTGACTTCATTGCAGAGCCTGTTCCTTTTGCTGTTTCTGGCATTTTGGTCCCAAATGTAACCAATTCCCAGGTTATATTACAATACTATGAACAACAAACATTCAAGGATGAGAGAGGATTTCCTACAAGACTTGCAGCGAGAGCATCAATCGGAGAAGGAAGAGCTGCTTCTTTCACGGGCCAAGCTCCTATTGTTAGCAGATTCTCTTCGAGAGGACCAGATTTCGTTGACAGAGACAGGAAGCCTGCTGATGTACTAAAGCCTGATATTCTTGCCCCGGGCCACCAAATCTGGGGAGCTTGGAGCCCCATTAGTGCCTTAGAACCCTCATTAGTGGGACAAAGTTTTGCACTACTTTCTGGTACAAGCATGGCAACACCTCATATCGCTGGAATAGCAGCACTTATTAAGCAGTACAATCCTTCATGGACTCCTTCCATGATTGCATCTGCGATTTCCACCACGGCAACCAAGTATGATAAAAATGGAGAACTGATAATGGCCGAAGGATCCGATATAGGCAATCAATATCCCTCCACTCCTTTTGATTTTGGAGCTGGCTTTGTCAGTCCAAGTCATGCCATGGATCCGGGTCTAGTCTTATCTTCAGGTGAAGTATACACTAGCTTTCTAGCTTGTTTGATTTTCTCTATTGAAGTAATGTTAATGGCCTTTGAATTGAAAACAGGATATGAAGACTACATTAGCTTCTTGTGCTCATTGCATGATACCAATCCAAGTACAATAAGAAGTGTCACTGGAGAATTGTGCAACAAGCCACTTGACCATCCAGCCAATCTGAACCTTCCTTCAGTAACAATATCAGCATTGAATGGGTCTCAAATAGTACGAAGGGTTTTCATGAACGTAGAGAGCAAGCCAGAGACTTACTCTAGCTCGGTGCTGCCACCAAATGGGACAACAGTAGACATATCTCCTCCTTCGTTTACCATAGCTCCACAAGGTACTCAAGAGCTAGATATACAGTTCAATGTGACCCAAGCAATGGATCAATTCACCTATGGTGAAATCGTTCTTACAGGAAGTTTAAATCATATTGTCAGGATACCTTTATCAGTTTTTCCAGTTTCAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0032501 GO:0032502 GO:0042335 GO:0043170 GO:0044238 GO:0048856 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

840

Amino Acids

89.85

Weight (kDa)

5.59

Isoelectric Point (pI)

32.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	57 - 121	6.4e-12	Peptidase inhibitor I9
Peptidase_S8	PF00082	147 - 638	5.7e-41	Subtilase family
fn3_6	PF17766	741 - 835	1.1e-16	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62340
fragaria_vesca	FvH4_3g01420
malus_domestica	MD05G1352200.v1.1 MD10G1326200.v1.1
prunus_persica	Prupe.4G015500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0002151 RchiOBHm_Chr5g0002191
rosa_laevigata	RLG00000031001 RLG00000031002 RLG00000031007
rosa_multiflora	Rmu_co8154878.1_g000001 Rmu_sc0001492.1_g000001 Rmu_sc0007900.1_g000001 Rmu_sc0013155.1_g000003 Rmu_ssc0000001.1_g000005
rosa_roxburghii	Rroxscaffold_1G00073760
rosa_rugosa	Rorug04G0394700
rosa_samantha	Rh5AG016500 Rh5AG016600 Rh5AG017100 Rh5BG020000 Rh5CG017800 Rh5CG017900 Rh5CG018800 Rh5DG018000
rosa_wichuraiana	Rw2G029690 Rw5G001610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	504
AasI	GACNNNNNNGTC	1 cut(s)	696
Acc36I	ACCTGC	1 cut(s)	995
AccB1I	GGYRCC	1 cut(s)	781
AccB7I	CCANNNNNTGG	3 cut(s)	1421, 2339, 2431
AccI	GTMKAC	2 cut(s)	2043, 2352
AccII	CGCG	1 cut(s)	793
AciI	CCGC	2 cut(s)	793, 1055
AclWI	GGATC	7 cut(s)	1274, 1287, 1929, 1942, 2006, 2019, 2442
AcoI	YGGCCR	2 cut(s)	1197, 1926
AcsI	RAATTY	2 cut(s)	159, 1086
AcuI	CTGAAG	3 cut(s)	420, 2016, 2220
AcvI	CACGTG	1 cut(s)	788
AdeI	CACNNNGTG	1 cut(s)	788
AfaI	GTAC	7 cut(s)	374, 1680, 1789, 1841, 2167, 2274, 2392
AfiI	CCNNNNNNNGG	9 cut(s)	22, 298, 827, 923, 1054, 1421, 1717, 2339, 2431
AflII	CTTAAG	1 cut(s)	940
AflIII	ACRYGT	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	1491
Alw21I	GWGCWC	2 cut(s)	1381, 2144
Alw26I	GTCTC	6 cut(s)	96, 218, 551, 1653, 2268, 2303
AlwI	GGATC	7 cut(s)	1274, 1287, 1929, 1942, 2006, 2019, 2442
AlwNI	CAGNNNCTG	1 cut(s)	1442
Ama87I	CYCGRG	1 cut(s)	1702
AoxI	GGCC	7 cut(s)	424, 1016, 1197, 1603, 1705, 1926, 2094
ApeKI	GCWGC	7 cut(s)	26, 716, 1001, 1559, 1589, 1823, 2329
ApoI	RAATTY	2 cut(s)	159, 1086
AseI	ATTAAT	1 cut(s)	1212
Asp700I	GAANNNNTTC	3 cut(s)	752, 867, 2457
AspA2I	CCTAGG	1 cut(s)	1283
AspLEI	GCGC	2 cut(s)	31, 793
AspS9I	GGNCC	8 cut(s)	563, 905, 1016, 1148, 1471, 1603, 1640, 1705
AsuC2I	CCSGG	3 cut(s)	1703, 1704, 2016
AsuHPI	GGTGA	7 cut(s)	452, 514, 663, 1436, 2048, 2434, 2462
AsuII	TTCGAA	1 cut(s)	164
AvaI	CYCGRG	1 cut(s)	1702
AvaII	GGWCC	5 cut(s)	563, 905, 1148, 1471, 1640
AvrII	CCTAGG	1 cut(s)	1283
BalI	TGGCCA	1 cut(s)	1199
BamHI	GGATCC	3 cut(s)	1279, 1934, 2011
BanI	GGYRCC	1 cut(s)	781
BanII	GRGCYC	4 cut(s)	518, 631, 1381, 1733
BbrPI	CACGTG	1 cut(s)	788
BbsI	GAAGAC	1 cut(s)	2127
Bbv12I	GWGCWC	2 cut(s)	1381, 2144
BbvI	GCAGC	7 cut(s)	13, 703, 1013, 1571, 1576, 1835, 2316
BccI	CCATC	5 cut(s)	139, 680, 869, 1367, 2220
BceAI	ACGGC	3 cut(s)	286, 1386, 1905
BciT130I	CCWGG	1 cut(s)	1493
BciVI	GTATCC	2 cut(s)	828, 2484
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	3 cut(s)	1703, 1704, 2016
BcoDI	GTCTC	6 cut(s)	96, 218, 551, 1653, 2268, 2303
BfaI	CTAG	9 cut(s)	632, 771, 890, 1284, 2021, 2049, 2057, 2319, 2402
BfmI	CTRYAG	3 cut(s)	209, 235, 822
BfrI	CTTAAG	1 cut(s)	940
BfuAI	ACCTGC	1 cut(s)	995
BfuI	GTATCC	2 cut(s)	828, 2484
BisI	GCNGC	7 cut(s)	27, 717, 1002, 1560, 1590, 1824, 2330
BlnI	CCTAGG	1 cut(s)	1283
BlsI	GCNGC	7 cut(s)	28, 718, 1003, 1561, 1591, 1825, 2331
Bme1390I	CCNGG	4 cut(s)	1493, 1703, 1704, 2016
Bme18I	GGWCC	5 cut(s)	563, 905, 1148, 1471, 1640
BmeT110I	CYCGRG	1 cut(s)	1702
BmgT120I	GGNCC	8 cut(s)	563, 905, 1016, 1148, 1471, 1603, 1640, 1705
BmiI	GGNNCC	6 cut(s)	783, 1281, 1473, 1730, 1936, 2013
BmrFI	CCNGG	4 cut(s)	1493, 1703, 1704, 2016
BmsI	GCATC	6 cut(s)	483, 670, 716, 1195, 1577, 1880
BpiI	GAAGAC	1 cut(s)	2127
BplI	GAGNNNNNCTC	2 cut(s)	2300, 2332
BpmI	CTGGAG	2 cut(s)	750, 2205
Bpu14I	TTCGAA	1 cut(s)	164
BpuEI	CTTGAG	3 cut(s)	242, 410, 2379
BpuMI	CCSGG	3 cut(s)	1703, 1704, 2016
BsaAI	YACGTR	1 cut(s)	788
BsaBI	GATNNNNATC	1 cut(s)	2157
BsaI	GGTCTC	1 cut(s)	2268
BsaJI	CCNNGG	8 cut(s)	1049, 1200, 1283, 1491, 1701, 1702, 1887, 2007
BsaXI	ACNNNNNCTCC	8 cut(s)	361, 391, 723, 753, 870, 900, 2365, 2395
Bsc4I	CCNNNNNNNGG	9 cut(s)	22, 298, 827, 923, 1054, 1421, 1717, 2339, 2431
Bse1I	ACTGG	5 cut(s)	58, 232, 565, 2188, 2510
Bse3DI	GCAATG	5 cut(s)	595, 636, 1431, 2144, 2436
Bse8I	GATNNNNATC	1 cut(s)	2157
BseBI	CCWGG	1 cut(s)	1493
BseDI	CCNNGG	8 cut(s)	1049, 1200, 1283, 1491, 1701, 1702, 1887, 2007
BseGI	GGATG	5 cut(s)	889, 1210, 1343, 1537, 2212
BseJI	GATNNNNATC	1 cut(s)	2157
BseLI	CCNNNNNNNGG	9 cut(s)	22, 298, 827, 923, 1054, 1421, 1717, 2339, 2431
BseMI	GCAATG	5 cut(s)	595, 636, 1431, 2144, 2436
BseMII	CTCAG	2 cut(s)	503, 633
BseNI	ACTGG	5 cut(s)	58, 232, 565, 2188, 2510
BseRI	GAGGAG	3 cut(s)	366, 369, 2352
BseXI	GCAGC	7 cut(s)	13, 703, 1013, 1571, 1576, 1835, 2316
BseYI	CCCAGC	3 cut(s)	574, 623, 980
BsgI	GTGCAG	2 cut(s)	468, 1297
Bsh1236I	CGCG	1 cut(s)	793
BshFI	GGCC	7 cut(s)	426, 1018, 1199, 1605, 1707, 1928, 2096
BshNI	GGYRCC	1 cut(s)	781
BsiHKAI	GWGCWC	2 cut(s)	1381, 2144
BsiHKCI	CYCGRG	1 cut(s)	1702
BsiSI	CCGG	3 cut(s)	1074, 1703, 2015
BslFI	GGGAC	3 cut(s)	1457, 1776, 2356
BslI	CCNNNNNNNGG	9 cut(s)	22, 298, 827, 923, 1054, 1421, 1717, 2339, 2431
BsmAI	GTCTC	6 cut(s)	96, 218, 551, 1653, 2268, 2303
BsmFI	GGGAC	3 cut(s)	1457, 1776, 2356
BsnI	GGCC	7 cut(s)	426, 1018, 1199, 1605, 1707, 1928, 2096
Bso31I	GGTCTC	1 cut(s)	2268
BsoBI	CYCGRG	1 cut(s)	1702
Bsp119I	TTCGAA	1 cut(s)	164
Bsp1286I	GDGCHC	5 cut(s)	518, 631, 1381, 1733, 2144
Bsp143I	GATC	6 cut(s)	70, 199, 1279, 1934, 2011, 2434
Bsp19I	CCATGG	1 cut(s)	2007
BspACI	CCGC	2 cut(s)	793, 1055
BspANI	GGCC	7 cut(s)	426, 1018, 1199, 1605, 1707, 1928, 2096
BspCNI	CTCAG	2 cut(s)	504, 632
BspFNI	CGCG	1 cut(s)	793
BspHI	TCATGA	2 cut(s)	196, 2286
BspLI	GGNNCC	6 cut(s)	783, 1281, 1473, 1730, 1936, 2013
BspMI	ACCTGC	1 cut(s)	995
BspPI	GGATC	7 cut(s)	1274, 1287, 1929, 1942, 2006, 2019, 2442
BspQI	GCTCTTC	1 cut(s)	1579
BspT104I	TTCGAA	1 cut(s)	164
BspT107I	GGYRCC	1 cut(s)	781
BspTI	CTTAAG	1 cut(s)	940
BspTNI	GGTCTC	1 cut(s)	2268
BsrDI	GCAATG	5 cut(s)	595, 636, 1431, 2144, 2436
BsrI	ACTGG	5 cut(s)	58, 232, 565, 2188, 2510
BssECI	CCNNGG	8 cut(s)	1049, 1200, 1283, 1491, 1701, 1702, 1887, 2007
BssMI	GATC	6 cut(s)	70, 199, 1279, 1934, 2011, 2434
BssNAI	GTATAC	1 cut(s)	2044
BssT1I	CCWWGG	4 cut(s)	1049, 1200, 1283, 2007
Bst1107I	GTATAC	1 cut(s)	2044
Bst2UI	CCWGG	1 cut(s)	1493
Bst4CI	ACNGT	6 cut(s)	10, 155, 653, 826, 2350, 2412
Bst6I	CTCTTC	3 cut(s)	1248, 1579, 1636
BstAFI	CTTAAG	1 cut(s)	940
BstAPI	GCANNNNNTGC	2 cut(s)	713, 788
BstBAI	YACGTR	1 cut(s)	788
BstBI	TTCGAA	1 cut(s)	164
BstC8I	GCNNGC	5 cut(s)	242, 999, 1671, 1984, 2303
BstDEI	CTNAG	4 cut(s)	491, 512, 619, 1744
BstDSI	CCRYGG	2 cut(s)	1887, 2007
BstENI	CCTNNNNNAGG	1 cut(s)	825
BstF5I	GGATG	5 cut(s)	889, 1210, 1343, 1537, 2212
BstFNI	CGCG	1 cut(s)	793
BstHHI	GCGC	2 cut(s)	31, 793
BstKTI	GATC	6 cut(s)	73, 202, 1282, 1937, 2014, 2437
BstMAI	GTCTC	6 cut(s)	96, 218, 551, 1653, 2268, 2303
BstMBI	GATC	6 cut(s)	70, 199, 1279, 1934, 2011, 2434
BstNI	CCWGG	1 cut(s)	1493
BstNSI	RCATGY	1 cut(s)	949
BstSCI	CCNGG	4 cut(s)	1491, 1701, 1702, 2014
BstSFI	CTRYAG	3 cut(s)	209, 235, 822
BstUI	CGCG	1 cut(s)	793
BstV1I	GCAGC	7 cut(s)	13, 703, 1013, 1571, 1576, 1835, 2316
BstV2I	GAAGAC	1 cut(s)	2127
BstX2I	RGATCY	3 cut(s)	1279, 1934, 2011
BstYI	RGATCY	3 cut(s)	1279, 1934, 2011
BstZ17I	GTATAC	1 cut(s)	2044
BsuI	GTATCC	2 cut(s)	828, 2484
BsuRI	GGCC	7 cut(s)	426, 1018, 1199, 1605, 1707, 1928, 2096
BtgI	CCRYGG	2 cut(s)	1887, 2007
BtsCI	GGATG	5 cut(s)	889, 1210, 1343, 1537, 2212
BtsIMutI	CAGTG	3 cut(s)	160, 663, 2181
BveI	ACCTGC	1 cut(s)	995
Cac8I	GCNNGC	5 cut(s)	242, 999, 1671, 1984, 2303
CaiI	CAGNNNCTG	1 cut(s)	1442
CciI	TCATGA	2 cut(s)	196, 2286
CfoI	GCGC	2 cut(s)	31, 793
Cfr13I	GGNCC	8 cut(s)	563, 905, 1016, 1148, 1471, 1603, 1640, 1705
Cfr9I	CCCGGG	1 cut(s)	1702
CseI	GACGC	1 cut(s)	421
Csp6I	GTAC	7 cut(s)	373, 1679, 1788, 1840, 2166, 2273, 2391
CspCI	CAANNNNNGTGG	4 cut(s)	1257, 1292, 1951, 1986
CviQI	GTAC	7 cut(s)	373, 1679, 1788, 1840, 2166, 2273, 2391
DdeI	CTNAG	4 cut(s)	491, 512, 619, 1744
DpnI	GATC	6 cut(s)	72, 201, 1281, 1936, 2013, 2436
DpnII	GATC	6 cut(s)	70, 199, 1279, 1934, 2011, 2434
DraI	TTTAAA	2 cut(s)	256, 2475
DraIII	CACNNNGTG	1 cut(s)	788
DrdI	GACNNNNNNGTC	1 cut(s)	696
DseDI	GACNNNNNNGTC	1 cut(s)	696
EaeI	YGGCCR	2 cut(s)	1197, 1926
Eam1104I	CTCTTC	3 cut(s)	1248, 1579, 1636
EarI	CTCTTC	3 cut(s)	1248, 1579, 1636
Ecl136II	GAGCTC	1 cut(s)	1379
Eco130I	CCWWGG	4 cut(s)	1049, 1200, 1283, 2007
Eco24I	GRGCYC	4 cut(s)	518, 631, 1381, 1733
Eco31I	GGTCTC	1 cut(s)	2268
Eco47I	GGWCC	5 cut(s)	563, 905, 1148, 1471, 1640
Eco53kI	GAGCTC	1 cut(s)	1379
Eco57I	CTGAAG	3 cut(s)	420, 2016, 2220
Eco72I	CACGTG	1 cut(s)	788
Eco88I	CYCGRG	1 cut(s)	1702
EcoICRI	GAGCTC	1 cut(s)	1379
EcoNI	CCTNNNNNAGG	1 cut(s)	825
EcoRII	CCWGG	1 cut(s)	1491
EcoT14I	CCWWGG	4 cut(s)	1049, 1200, 1283, 2007
EcoT38I	GRGCYC	4 cut(s)	518, 631, 1381, 1733
ErhI	CCWWGG	4 cut(s)	1049, 1200, 1283, 2007
FalI	AAGNNNNNCTT	4 cut(s)	484, 516, 1576, 1608
FaqI	GGGAC	3 cut(s)	1457, 1776, 2356
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	2 cut(s)	2043, 2352
Fnu4HI	GCNGC	7 cut(s)	27, 717, 1002, 1560, 1590, 1824, 2330
FokI	GGATG	5 cut(s)	896, 1217, 1330, 1544, 2199
FriOI	GRGCYC	4 cut(s)	518, 631, 1381, 1733
Fsp4HI	GCNGC	7 cut(s)	27, 717, 1002, 1560, 1590, 1824, 2330
FspBI	CTAG	9 cut(s)	632, 771, 890, 1284, 2021, 2049, 2057, 2319, 2402
GlaI	GCGC	2 cut(s)	30, 792
GluI	GCNGC	7 cut(s)	27, 717, 1002, 1560, 1590, 1824, 2330
GsaI	CCCAGC	3 cut(s)	578, 627, 984
GsuI	CTGGAG	2 cut(s)	750, 2205
HaeIII	GGCC	7 cut(s)	426, 1018, 1199, 1605, 1707, 1928, 2096
HapII	CCGG	3 cut(s)	1074, 1703, 2015
HgaI	GACGC	1 cut(s)	421
HhaI	GCGC	2 cut(s)	31, 793
Hin6I	GCGC	2 cut(s)	29, 791
HinP1I	GCGC	2 cut(s)	29, 791
HincII	GTYRAC	1 cut(s)	1654
HindII	GTYRAC	1 cut(s)	1654
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	7 cut(s)	104, 191, 467, 1223, 1329, 1626, 1855
HpaII	CCGG	3 cut(s)	1074, 1703, 2015
HphI	GGTGA	7 cut(s)	452, 514, 663, 1436, 2048, 2434, 2462
Hpy166II	GTNNAC	6 cut(s)	51, 375, 1654, 2044, 2353, 2373
Hpy188I	TCNGA	7 cut(s)	513, 905, 1324, 1385, 1577, 1939, 2226
Hpy188III	TCNNGA	8 cut(s)	197, 221, 872, 1146, 1635, 2287, 2396, 2488
Hpy8I	GTNNAC	6 cut(s)	51, 375, 1654, 2044, 2353, 2373
Hpy99I	CGWCG	1 cut(s)	978
HpyCH4III	ACNGT	6 cut(s)	10, 155, 653, 826, 2350, 2412
HpyCH4IV	ACGT	5 cut(s)	261, 371, 430, 787, 2292
HpyF3I	CTNAG	4 cut(s)	491, 512, 619, 1744
HpySE526I	ACGT	5 cut(s)	261, 371, 430, 787, 2292
HspAI	GCGC	2 cut(s)	29, 791
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	6 cut(s)	70, 199, 1279, 1934, 2011, 2434
LguI	GCTCTTC	1 cut(s)	1579
LmnI	GCTCC	8 cut(s)	325, 353, 1118, 1615, 1721, 1728, 1979, 2386
Lsp1109I	GCAGC	7 cut(s)	13, 703, 1013, 1571, 1576, 1835, 2316
LweI	GCATC	6 cut(s)	483, 670, 716, 1195, 1577, 1880
MaeI	CTAG	9 cut(s)	632, 771, 890, 1284, 2021, 2049, 2057, 2319, 2402
MaeII	ACGT	5 cut(s)	261, 371, 430, 787, 2292
MaeIII	GTNAC	9 cut(s)	4, 393, 931, 1173, 1424, 1480, 2179, 2239, 2419
MalI	GATC	6 cut(s)	72, 201, 1281, 1936, 2013, 2436
MboI	GATC	6 cut(s)	70, 199, 1279, 1934, 2011, 2434
MboII	GAAGA	9 cut(s)	80, 126, 1062, 1089, 1265, 1596, 1623, 2022, 2132
MfeI	CAATTG	3 cut(s)	182, 855, 1218
MflI	RGATCY	3 cut(s)	1279, 1934, 2011
MhlI	GDGCHC	5 cut(s)	518, 631, 1381, 1733, 2144
MlsI	TGGCCA	1 cut(s)	1199
MluNI	TGGCCA	1 cut(s)	1199
MlyI	GAGTC	3 cut(s)	98, 1232, 1849
MmeI	TCCRAC	1 cut(s)	883
Mox20I	TGGCCA	1 cut(s)	1199
MroXI	GAANNNNTTC	3 cut(s)	752, 867, 2457
MscI	TGGCCA	1 cut(s)	1199
MseI	TTAA	9 cut(s)	92, 117, 255, 941, 1212, 1353, 1833, 2090, 2474
Msp20I	TGGCCA	1 cut(s)	1199
MspA1I	CMGCKG	1 cut(s)	623
MspCI	CTTAAG	1 cut(s)	940
MspI	CCGG	3 cut(s)	1074, 1703, 2015
MspR9I	CCNGG	4 cut(s)	1493, 1703, 1704, 2016
MunI	CAATTG	3 cut(s)	182, 855, 1218
MvaI	CCWGG	1 cut(s)	1493
MvnI	CGCG	1 cut(s)	793
NciI	CCSGG	3 cut(s)	1703, 1704, 2016
NcoI	CCATGG	1 cut(s)	2007
NdeII	GATC	6 cut(s)	70, 199, 1279, 1934, 2011, 2434
NlaIV	GGNNCC	6 cut(s)	783, 1281, 1473, 1730, 1936, 2013
NmuCI	GTSAC	4 cut(s)	931, 1424, 2179, 2419
NspI	RCATGY	1 cut(s)	949
NspV	TTCGAA	1 cut(s)	164
PagI	TCATGA	2 cut(s)	196, 2286
PciSI	GCTCTTC	1 cut(s)	1579
PdmI	GAANNNNTTC	3 cut(s)	752, 867, 2457
PfeI	GAWTC	4 cut(s)	191, 467, 1329, 1626
PflMI	CCANNNNNTGG	3 cut(s)	1421, 2339, 2431
PkrI	GCNGC	7 cut(s)	28, 718, 1003, 1561, 1591, 1825, 2331
PleI	GAGTC	3 cut(s)	98, 1231, 1849
PmaCI	CACGTG	1 cut(s)	788
PmlI	CACGTG	1 cut(s)	788
PpsI	GAGTC	3 cut(s)	98, 1231, 1849
Ppu21I	YACGTR	1 cut(s)	788
PshBI	ATTAAT	1 cut(s)	1212
PsiI	TTATAA	1 cut(s)	504
Psp124BI	GAGCTC	1 cut(s)	1381
Psp6I	CCWGG	1 cut(s)	1491
PspCI	CACGTG	1 cut(s)	788
PspFI	CCCAGC	3 cut(s)	574, 623, 980
PspGI	CCWGG	1 cut(s)	1491
PspN4I	GGNNCC	6 cut(s)	783, 1281, 1473, 1730, 1936, 2013
PspPI	GGNCC	8 cut(s)	563, 905, 1016, 1148, 1471, 1603, 1640, 1705
PstNI	CAGNNNCTG	1 cut(s)	1442
PsuI	RGATCY	3 cut(s)	1279, 1934, 2011
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	7 cut(s)	374, 1680, 1789, 1841, 2167, 2274, 2392
RsaNI	GTAC	7 cut(s)	373, 1679, 1788, 1840, 2166, 2273, 2391
SacI	GAGCTC	1 cut(s)	1381
SapI	GCTCTTC	1 cut(s)	1579
SaqAI	TTAA	9 cut(s)	92, 117, 255, 941, 1212, 1353, 1833, 2090, 2474
SatI	GCNGC	7 cut(s)	27, 717, 1002, 1560, 1590, 1824, 2330
Sau3AI	GATC	6 cut(s)	70, 199, 1279, 1934, 2011, 2434
Sau96I	GGNCC	8 cut(s)	563, 905, 1016, 1148, 1471, 1603, 1640, 1705
SchI	GAGTC	3 cut(s)	98, 1232, 1849
ScrFI	CCNGG	4 cut(s)	1493, 1703, 1704, 2016
SduI	GDGCHC	5 cut(s)	518, 631, 1381, 1733, 2144
SfaNI	GCATC	6 cut(s)	483, 670, 716, 1195, 1577, 1880
SfcI	CTRYAG	3 cut(s)	209, 235, 822
SfuI	TTCGAA	1 cut(s)	164
SinI	GGWCC	5 cut(s)	563, 905, 1148, 1471, 1640
SmaI	CCCGGG	1 cut(s)	1704
SmlI	CTYRAG	4 cut(s)	221, 389, 940, 2394
SmoI	CTYRAG	4 cut(s)	221, 389, 940, 2394
SsiI	CCGC	2 cut(s)	793, 1055
SspI	AATATT	1 cut(s)	532
SspMI	CTAG	9 cut(s)	632, 771, 890, 1284, 2021, 2049, 2057, 2319, 2402
SstI	GAGCTC	1 cut(s)	1381
StyD4I	CCNGG	4 cut(s)	1491, 1701, 1702, 2014
StyI	CCWWGG	4 cut(s)	1049, 1200, 1283, 2007
TaaI	ACNGT	6 cut(s)	10, 155, 653, 826, 2350, 2412
TaiI	ACGT	5 cut(s)	264, 374, 433, 790, 2295
TaqI	TCGA	6 cut(s)	73, 164, 871, 973, 1012, 1634
TatI	WGTACW	3 cut(s)	1678, 1839, 2165
TfiI	GAWTC	4 cut(s)	191, 467, 1329, 1626
Tru1I	TTAA	9 cut(s)	92, 117, 255, 941, 1212, 1353, 1833, 2090, 2474
Tru9I	TTAA	9 cut(s)	92, 117, 255, 941, 1212, 1353, 1833, 2090, 2474
TscAI	CASTG	3 cut(s)	160, 663, 2188
TseFI	GTSAC	4 cut(s)	931, 1424, 2179, 2419
TseI	GCWGC	7 cut(s)	26, 716, 1001, 1559, 1589, 1823, 2329
Tsp45I	GTSAC	4 cut(s)	931, 1424, 2179, 2419
TspMI	CCCGGG	1 cut(s)	1702
TspRI	CASTG	3 cut(s)	160, 663, 2188
Van91I	CCANNNNNTGG	3 cut(s)	1421, 2339, 2431
Vha464I	CTTAAG	1 cut(s)	940
VpaK11BI	GGWCC	5 cut(s)	563, 905, 1148, 1471, 1640
VspI	ATTAAT	1 cut(s)	1212
XagI	CCTNNNNNAGG	1 cut(s)	825
XapI	RAATTY	2 cut(s)	159, 1086
XceI	RCATGY	1 cut(s)	949
XcmI	CCANNNNNNNNNTGG	1 cut(s)	434
XmaI	CCCGGG	1 cut(s)	1702
XmaJI	CCTAGG	1 cut(s)	1283
XmiI	GTMKAC	2 cut(s)	2043, 2352
XmnI	GAANNNNTTC	3 cut(s)	752, 867, 2457
XspI	CTAG	9 cut(s)	632, 771, 890, 1284, 2021, 2049, 2057, 2319, 2402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.