Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006269

Physical Location & Seq

Genomic Coordinates Forward (+)

1298751 .. 1302222

Gene Structure 3472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031001

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2472 bp

ATGCAATCAAGCATGGCAACTGCAAGAGCCAATATCTTATTGCCTTTGTTTTGTTTCATAGCGCTTCTCGCTTTTGTGATGTTTACTGCTTTTTCAGCAGAAGATCGAGCTATATACTTGGTTTTAATGGAAGGAGACTCACTTACATTCAATGGAGGCTCTCCATCTTCACGCCTCAACCTAAACAGTGAAATTTCGAAGGCTCATGCAAAGCAATTGGAGGATTCTCATGATCAACTTCTACAGAGCAATCTTGAGACTGGAAGCTACAGCAAGCTTTACAGCTTTAAACACGTTGCAAACGGCTTTGCTGTCCATACAACCCCTTCACAGGCTGAAAAGCTGAAATATGCTCCAAGTGTAAAGCTGGTTGAGAGAGATAGAGGAGCGAAGTTGATGACAACGTACACTCCTCGCTTCCTTGAGTTACCTGAAGGAGTATGGACACAAGAAGGAGGCCAACGTAATGCTGGTGAAGGAATTGTGATTGGTTTTGTGGATTCTGGCATCAACCCTGTACATCTAAGTTTTGCTTATAATCCTCTGAGCCCTTTCACCTCTAATATTTCTCATTTTTCGGGTGCTTGTGAGACTGGTCCTCTCTTCCCAGCAACTTCATGCAATGGTAAAATAGTTTCAGCCAAGTTTTTCTCAGCTGGGGCTCTAGCCATTGCTACTCTCAACAGTTCAGTGGATTTTCTTTCACCTTTTGACTCAGATGGACATGGCAGTCATGTGGCATCGGTTGCTGCTGGAAATGCTGGAGTTCCTGTGGTTGTGAATGGCTTCTATTATGGACAAGCTAGTGGAATGGCACCACGTGCGCGGATTGCTGTATATAAAGCTGTGTATCCTACAGTTGGAACTTTGGCAGATGTAGTTTCTGCAATTGATGAAGCAATTCGAGATGGAGTGGATGTCCTAGCACTCTCTGTCGGACCAGACGAGCCGCCATTGGGTAGAGTGACCTTCTTAAGCATGTTTGATGTGTTCATGTTATATGCTCGACGAGCTGGGGTTTTTGTGGTGCAAGCAGCAGGTAATCGAGGGCCAGACCCTTCAAGTGTAGTGTCTTACAGCCCTTGGGCAGTCGGTGTAGCTTCTTCCGGCACAGATAGAATTTATCCTTCTTCTATTGTTCTTGGAAATGGAGCAAGAATTGAAGGTGTGGGATTATCAGGACCAACTTTTGGATATAGGTTACTTCAACATAGGTTGGTTTTGGCCAAGGATGCAATTAATCCAATTGGGTCATTCCCAAGAACCCCACCCTATGTTGAAGAGTGCCAATTTCCACAAGCATTGGATACTAGGTTAGTTATAGGTAGTATTGTCATCTGCACATTCTCGGAGGGATTCTATAACAGGATATCCACCCTTAATGCCATCATCAACACAGCAAGAGCTCTTGGATTTATGGGTTTTGTTCTTGTTGCAAGTCCAGCCTATGGTGACTTCATTGCAGAGCCTGTTCCTTTTGCTGTTTCTGGCATTTTAGTCCCAAATGTAACCAATTCCCAGGTTATTTTACAATACTATGAACAACAAACATTCAAGGATGAGAGAGGATTTCCTACAAGACTTGCAGCGAGAGCATCAATCGGAGAAGGAAGAGCTGCTTCTTTCACGGGCCAAGCACCTATTGTTAGCAGATTCTCTTCGAGAGGACCAGATTTCATTGACAGGGACAGGAAGCCTGCTGATGTACTAAAGCCTGATATTCTTGCCCCGGGGCACCAAATCTGGGGAGCTTGGAGCCCCATTAGTGCCTTAGAACCCTCATTAGTGGGACAAAGTTTTGCACTACTTTCTGGTACAAGCATGGCAGCACCTCATATAGCTGGAATAGCAGCACTTATTAAGCAGTACAATCCTTCATGGACTCCTTCCATGATTGCATCTGCGATTTCCACCACGGCAACCAAATATGATAAAAATGGAGAACTGATAATGGCTGAAGGATCTGATATAGGCAGTAAATATCCCTCCACTCCTTTTGATTTTGGAGCTGGCTTTGTCAGTCCAAGTCATGCCATGGATCCGGGTCTAGTCTTATCTTCAGGATATGAAGACTACATCAGCTTCTTGTGCTCATTGCATGATACCAATCCAAGTACAATAAGAACTGTCACTGGAGAGTTGTGCAACAAGCCACTTGACCATCCAGCCAATCTGAACCTTCCTTCAGTAACAATATCAGCATTGAATGGGTCTCAAATAGTACGAAGGGTTTTCATGAACGTAGAGAGCAAGCCAGAGACTTACTCTAGCTCGGTGGTGCCTCCAAATGGGACAACAGTAGACATATCTCCTCCTTCGTTTACCATAGCTCCACAAGGTACTCAAGAGCTAGGTATACAGTTCAATGTGACCCAAGCAATGGATCAATTCACCTATGGTGAAATCGTTCTTACAGGAAGTTTAAATCATATTGTCAGGATACCTTTATCAGTTTTTCCAGTTTCAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0032501 GO:0032502 GO:0042335 GO:0043170 GO:0044238 GO:0048856 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

824

Amino Acids

87.7

Weight (kDa)

5.79

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	68 - 132	3.8e-12	Peptidase inhibitor I9
Peptidase_S8	PF00082	158 - 647	1.2e-40	Subtilase family
fn3_6	PF17766	724 - 818	9.4e-17	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62340
fragaria_vesca	FvH4_3g01420
malus_domestica	MD05G1352200.v1.1 MD10G1326200.v1.1
prunus_persica	Prupe.4G015500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0002151 RchiOBHm_Chr5g0002191
rosa_laevigata	RLG00000031001 RLG00000031002 RLG00000031007
rosa_multiflora	Rmu_co8154878.1_g000001 Rmu_sc0001492.1_g000001 Rmu_sc0007900.1_g000001 Rmu_sc0013155.1_g000003 Rmu_ssc0000001.1_g000005
rosa_roxburghii	Rroxscaffold_1G00073760
rosa_rugosa	Rorug04G0394700
rosa_samantha	Rh5AG016500 Rh5AG016600 Rh5AG017100 Rh5BG020000 Rh5CG017800 Rh5CG017900 Rh5CG018800 Rh5DG018000
rosa_wichuraiana	Rw2G029690 Rw5G001610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
AasI	GACNNNNNNGTC	1 cut(s)	729
Acc36I	ACCTGC	1 cut(s)	1028
AccB1I	GGYRCC	3 cut(s)	814, 1734, 2278
AccB7I	CCANNNNNTGG	3 cut(s)	1190, 1448, 2380
AccI	GTMKAC	2 cut(s)	2301, 2356
AccII	CGCG	1 cut(s)	826
AciI	CCGC	2 cut(s)	826, 950
AclWI	GGATC	4 cut(s)	1969, 2033, 2046, 2391
AcoI	YGGCCR	1 cut(s)	1224
AcsI	RAATTY	2 cut(s)	192, 1119
AcuI	CTGAAG	4 cut(s)	453, 1977, 2043, 2169
AcvI	CACGTG	1 cut(s)	821
AdeI	CACNNNGTG	1 cut(s)	821
AfaI	GTAC	8 cut(s)	407, 519, 1707, 1816, 1868, 2116, 2223, 2341
AfeI	AGCGCT	1 cut(s)	63
AfiI	CCNNNNNNNGG	8 cut(s)	331, 860, 956, 1190, 1448, 1744, 2288, 2380
AflII	CTTAAG	1 cut(s)	973
AflIII	ACRYGT	1 cut(s)	292
AgsI	TTSAA	9 cut(s)	151, 1062, 1163, 1208, 1280, 1555, 2206, 2365, 2466
AjnI	CCWGG	1 cut(s)	1518
Alw21I	GWGCWC	2 cut(s)	1408, 2093
Alw26I	GTCTC	5 cut(s)	129, 251, 584, 2217, 2252
AlwI	GGATC	4 cut(s)	1969, 2033, 2046, 2391
AlwNI	CAGNNNCTG	1 cut(s)	1469
Ama87I	CYCGRG	1 cut(s)	1729
Aor51HI	AGCGCT	1 cut(s)	63
AoxI	GGCC	4 cut(s)	457, 1049, 1224, 1630
ApeKI	GCWGC	6 cut(s)	749, 1034, 1586, 1616, 1826, 1850
ApoI	RAATTY	2 cut(s)	192, 1119
AseI	ATTAAT	1 cut(s)	1239
Asp700I	GAANNNNTTC	3 cut(s)	785, 900, 2406
AspLEI	GCGC	2 cut(s)	64, 826
AspS9I	GGNCC	6 cut(s)	596, 938, 1049, 1181, 1630, 1667
AsuC2I	CCSGG	3 cut(s)	1730, 1731, 2043
AsuHPI	GGTGA	6 cut(s)	485, 547, 696, 1463, 2383, 2411
AsuII	TTCGAA	1 cut(s)	197
AvaI	CYCGRG	1 cut(s)	1729
AvaII	GGWCC	4 cut(s)	596, 938, 1181, 1667
BaeGI	GKGCMC	1 cut(s)	1737
BalI	TGGCCA	1 cut(s)	1226
BamHI	GGATCC	1 cut(s)	2038
BanI	GGYRCC	3 cut(s)	814, 1734, 2278
BanII	GRGCYC	4 cut(s)	551, 664, 1408, 1760
BbrPI	CACGTG	1 cut(s)	821
BbsI	GAAGAC	1 cut(s)	2076
Bbv12I	GWGCWC	2 cut(s)	1408, 2093
BbvI	GCAGC	6 cut(s)	736, 1046, 1598, 1603, 1838, 1862
BccI	CCATC	5 cut(s)	172, 713, 902, 1394, 2169
BceAI	ACGGC	2 cut(s)	319, 1932
BciT130I	CCWGG	1 cut(s)	1520
BciVI	GTATCC	3 cut(s)	861, 1300, 2433
BclI	TGATCA	1 cut(s)	232
BcnI	CCSGG	3 cut(s)	1730, 1731, 2043
BcoDI	GTCTC	5 cut(s)	129, 251, 584, 2217, 2252
BfaI	CTAG	7 cut(s)	665, 804, 923, 1311, 2048, 2268, 2351
BfmI	CTRYAG	3 cut(s)	242, 268, 855
BfoI	RGCGCY	1 cut(s)	65
BfrI	CTTAAG	1 cut(s)	973
BfuAI	ACCTGC	1 cut(s)	1028
BfuI	GTATCC	3 cut(s)	861, 1300, 2433
BisI	GCNGC	7 cut(s)	750, 950, 1035, 1587, 1617, 1827, 1851
BlsI	GCNGC	7 cut(s)	751, 951, 1036, 1588, 1618, 1828, 1852
Bme1390I	CCNGG	4 cut(s)	1520, 1730, 1731, 2043
Bme18I	GGWCC	4 cut(s)	596, 938, 1181, 1667
BmeT110I	CYCGRG	1 cut(s)	1729
BmgT120I	GGNCC	6 cut(s)	596, 938, 1049, 1181, 1630, 1667
BmiI	GGNNCC	5 cut(s)	816, 1736, 1757, 2040, 2280
BmrFI	CCNGG	4 cut(s)	1520, 1730, 1731, 2043
BmsI	GCATC	5 cut(s)	516, 749, 1222, 1604, 1907
BpiI	GAAGAC	1 cut(s)	2076
BplI	GAGNNNNNCTC	2 cut(s)	2249, 2281
BpmI	CTGGAG	2 cut(s)	783, 2154
Bpu14I	TTCGAA	1 cut(s)	197
BpuEI	CTTGAG	3 cut(s)	275, 443, 2328
BpuMI	CCSGG	3 cut(s)	1730, 1731, 2043
BsaAI	YACGTR	1 cut(s)	821
BsaBI	GATNNNNATC	1 cut(s)	2106
BsaI	GGTCTC	1 cut(s)	2217
BsaJI	CCNNGG	8 cut(s)	1082, 1227, 1518, 1728, 1729, 1730, 1914, 2034
BsaXI	ACNNNNNCTCC	8 cut(s)	394, 424, 756, 786, 903, 933, 2314, 2344
Bsc4I	CCNNNNNNNGG	8 cut(s)	331, 860, 956, 1190, 1448, 1744, 2288, 2380
Bse1I	ACTGG	4 cut(s)	265, 598, 2137, 2459
Bse3DI	GCAATG	5 cut(s)	628, 669, 1458, 2093, 2385
Bse8I	GATNNNNATC	1 cut(s)	2106
BseBI	CCWGG	1 cut(s)	1520
BseDI	CCNNGG	8 cut(s)	1082, 1227, 1518, 1728, 1729, 1730, 1914, 2034
BseGI	GGATG	4 cut(s)	922, 1237, 1564, 2161
BseJI	GATNNNNATC	1 cut(s)	2106
BseLI	CCNNNNNNNGG	8 cut(s)	331, 860, 956, 1190, 1448, 1744, 2288, 2380
BseMI	GCAATG	5 cut(s)	628, 669, 1458, 2093, 2385
BseMII	CTCAG	3 cut(s)	536, 666, 729
BseNI	ACTGG	4 cut(s)	265, 598, 2137, 2459
BseRI	GAGGAG	3 cut(s)	399, 402, 2301
BseSI	GKGCMC	1 cut(s)	1737
BseXI	GCAGC	6 cut(s)	736, 1046, 1598, 1603, 1838, 1862
BseYI	CCCAGC	3 cut(s)	607, 656, 1013
BsgI	GTGCAG	1 cut(s)	1324
Bsh1236I	CGCG	1 cut(s)	826
BshFI	GGCC	4 cut(s)	459, 1051, 1226, 1632
BshNI	GGYRCC	3 cut(s)	814, 1734, 2278
BsiHKAI	GWGCWC	2 cut(s)	1408, 2093
BsiHKCI	CYCGRG	1 cut(s)	1729
BsiSI	CCGG	3 cut(s)	1107, 1730, 2042
BslFI	GGGAC	4 cut(s)	1484, 1700, 1803, 2305
BslI	CCNNNNNNNGG	8 cut(s)	331, 860, 956, 1190, 1448, 1744, 2288, 2380
BsmAI	GTCTC	5 cut(s)	129, 251, 584, 2217, 2252
BsmFI	GGGAC	4 cut(s)	1484, 1700, 1803, 2305
BsnI	GGCC	4 cut(s)	459, 1051, 1226, 1632
Bso31I	GGTCTC	1 cut(s)	2217
BsoBI	CYCGRG	1 cut(s)	1729
Bsp119I	TTCGAA	1 cut(s)	197
Bsp1286I	GDGCHC	6 cut(s)	551, 664, 1408, 1737, 1760, 2093
Bsp1407I	TGTACA	1 cut(s)	517
Bsp143I	GATC	5 cut(s)	103, 232, 1961, 2038, 2383
Bsp19I	CCATGG	1 cut(s)	2034
BspACI	CCGC	2 cut(s)	826, 950
BspANI	GGCC	4 cut(s)	459, 1051, 1226, 1632
BspCNI	CTCAG	3 cut(s)	537, 665, 728
BspFNI	CGCG	1 cut(s)	826
BspHI	TCATGA	2 cut(s)	229, 2235
BspLI	GGNNCC	5 cut(s)	816, 1736, 1757, 2040, 2280
BspMI	ACCTGC	1 cut(s)	1028
BspPI	GGATC	4 cut(s)	1969, 2033, 2046, 2391
BspQI	GCTCTTC	1 cut(s)	1606
BspT104I	TTCGAA	1 cut(s)	197
BspT107I	GGYRCC	3 cut(s)	814, 1734, 2278
BspTI	CTTAAG	1 cut(s)	973
BspTNI	GGTCTC	1 cut(s)	2217
BsrDI	GCAATG	5 cut(s)	628, 669, 1458, 2093, 2385
BsrGI	TGTACA	1 cut(s)	517
BsrI	ACTGG	4 cut(s)	265, 598, 2137, 2459
BssECI	CCNNGG	8 cut(s)	1082, 1227, 1518, 1728, 1729, 1730, 1914, 2034
BssMI	GATC	5 cut(s)	103, 232, 1961, 2038, 2383
BssNAI	GTATAC	1 cut(s)	2357
BssT1I	CCWWGG	3 cut(s)	1082, 1227, 2034
Bst1107I	GTATAC	1 cut(s)	2357
Bst2UI	CCWGG	1 cut(s)	1520
Bst4CI	ACNGT	6 cut(s)	188, 686, 859, 2128, 2299, 2361
Bst6I	CTCTTC	4 cut(s)	608, 1275, 1606, 1663
BstAFI	CTTAAG	1 cut(s)	973
BstAPI	GCANNNNNTGC	2 cut(s)	746, 821
BstAUI	TGTACA	1 cut(s)	517
BstBAI	YACGTR	1 cut(s)	821
BstBI	TTCGAA	1 cut(s)	197
BstC8I	GCNNGC	5 cut(s)	275, 1032, 1698, 2011, 2252
BstDEI	CTNAG	5 cut(s)	524, 545, 652, 715, 1771
BstDSI	CCRYGG	2 cut(s)	1914, 2034
BstF5I	GGATG	4 cut(s)	922, 1237, 1564, 2161
BstFNI	CGCG	1 cut(s)	826
BstH2I	RGCGCY	1 cut(s)	65
BstHHI	GCGC	2 cut(s)	64, 826
BstKTI	GATC	5 cut(s)	106, 235, 1964, 2041, 2386
BstMAI	GTCTC	5 cut(s)	129, 251, 584, 2217, 2252
BstMBI	GATC	5 cut(s)	103, 232, 1961, 2038, 2383
BstNI	CCWGG	1 cut(s)	1520
BstNSI	RCATGY	1 cut(s)	982
BstSCI	CCNGG	4 cut(s)	1518, 1728, 1729, 2041
BstSFI	CTRYAG	3 cut(s)	242, 268, 855
BstSLI	GKGCMC	1 cut(s)	1737
BstUI	CGCG	1 cut(s)	826
BstV1I	GCAGC	6 cut(s)	736, 1046, 1598, 1603, 1838, 1862
BstV2I	GAAGAC	1 cut(s)	2076
BstX2I	RGATCY	2 cut(s)	1961, 2038
BstYI	RGATCY	2 cut(s)	1961, 2038
BstZ17I	GTATAC	1 cut(s)	2357
BsuI	GTATCC	3 cut(s)	861, 1300, 2433
BsuRI	GGCC	4 cut(s)	459, 1051, 1226, 1632
BtgI	CCRYGG	2 cut(s)	1914, 2034
BtsCI	GGATG	4 cut(s)	922, 1237, 1564, 2161
BtsIMutI	CAGTG	3 cut(s)	193, 696, 2130
BveI	ACCTGC	1 cut(s)	1028
Cac8I	GCNNGC	5 cut(s)	275, 1032, 1698, 2011, 2252
CaiI	CAGNNNCTG	1 cut(s)	1469
CciI	TCATGA	2 cut(s)	229, 2235
CfoI	GCGC	2 cut(s)	64, 826
Cfr13I	GGNCC	6 cut(s)	596, 938, 1049, 1181, 1630, 1667
Cfr9I	CCCGGG	1 cut(s)	1729
Csp6I	GTAC	8 cut(s)	406, 518, 1706, 1815, 1867, 2115, 2222, 2340
CspCI	CAANNNNNGTGG	4 cut(s)	1284, 1319, 1978, 2013
CviQI	GTAC	8 cut(s)	406, 518, 1706, 1815, 1867, 2115, 2222, 2340
DdeI	CTNAG	5 cut(s)	524, 545, 652, 715, 1771
DpnI	GATC	5 cut(s)	105, 234, 1963, 2040, 2385
DpnII	GATC	5 cut(s)	103, 232, 1961, 2038, 2383
DraI	TTTAAA	2 cut(s)	289, 2424
DraIII	CACNNNGTG	1 cut(s)	821
DrdI	GACNNNNNNGTC	1 cut(s)	729
DseDI	GACNNNNNNGTC	1 cut(s)	729
EaeI	YGGCCR	1 cut(s)	1224
Eam1104I	CTCTTC	4 cut(s)	608, 1275, 1606, 1663
EarI	CTCTTC	4 cut(s)	608, 1275, 1606, 1663
Ecl136II	GAGCTC	1 cut(s)	1406
Eco130I	CCWWGG	3 cut(s)	1082, 1227, 2034
Eco24I	GRGCYC	4 cut(s)	551, 664, 1408, 1760
Eco31I	GGTCTC	1 cut(s)	2217
Eco32I	GATATC	1 cut(s)	1371
Eco47I	GGWCC	4 cut(s)	596, 938, 1181, 1667
Eco47III	AGCGCT	1 cut(s)	63
Eco53kI	GAGCTC	1 cut(s)	1406
Eco57I	CTGAAG	4 cut(s)	453, 1977, 2043, 2169
Eco72I	CACGTG	1 cut(s)	821
Eco88I	CYCGRG	1 cut(s)	1729
EcoICRI	GAGCTC	1 cut(s)	1406
EcoRII	CCWGG	1 cut(s)	1518
EcoRV	GATATC	1 cut(s)	1371
EcoT14I	CCWWGG	3 cut(s)	1082, 1227, 2034
EcoT38I	GRGCYC	4 cut(s)	551, 664, 1408, 1760
ErhI	CCWWGG	3 cut(s)	1082, 1227, 2034
FalI	AAGNNNNNCTT	4 cut(s)	517, 549, 1603, 1635
FaqI	GGGAC	4 cut(s)	1484, 1700, 1803, 2305
FbaI	TGATCA	1 cut(s)	232
FblI	GTMKAC	2 cut(s)	2301, 2356
Fnu4HI	GCNGC	7 cut(s)	750, 950, 1035, 1587, 1617, 1827, 1851
FokI	GGATG	4 cut(s)	929, 1244, 1571, 2148
FriOI	GRGCYC	4 cut(s)	551, 664, 1408, 1760
Fsp4HI	GCNGC	7 cut(s)	750, 950, 1035, 1587, 1617, 1827, 1851
FspBI	CTAG	7 cut(s)	665, 804, 923, 1311, 2048, 2268, 2351
GlaI	GCGC	2 cut(s)	63, 825
GluI	GCNGC	7 cut(s)	750, 950, 1035, 1587, 1617, 1827, 1851
GsaI	CCCAGC	3 cut(s)	611, 660, 1017
GsuI	CTGGAG	2 cut(s)	783, 2154
HaeII	RGCGCY	1 cut(s)	65
HaeIII	GGCC	4 cut(s)	459, 1051, 1226, 1632
HapII	CCGG	3 cut(s)	1107, 1730, 2042
HhaI	GCGC	2 cut(s)	64, 826
Hin6I	GCGC	2 cut(s)	62, 824
HinP1I	GCGC	2 cut(s)	62, 824
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	7 cut(s)	137, 224, 500, 713, 1356, 1653, 1882
HpaII	CCGG	3 cut(s)	1107, 1730, 2042
HphI	GGTGA	6 cut(s)	485, 547, 696, 1463, 2383, 2411
Hpy166II	GTNNAC	5 cut(s)	84, 408, 2302, 2322, 2357
Hpy188I	TCNGA	7 cut(s)	546, 718, 938, 1351, 1604, 1966, 2175
Hpy188III	TCNNGA	9 cut(s)	230, 254, 905, 1179, 1662, 2061, 2236, 2345, 2437
Hpy8I	GTNNAC	5 cut(s)	84, 408, 2302, 2322, 2357
Hpy99I	CGWCG	1 cut(s)	1011
HpyCH4III	ACNGT	6 cut(s)	188, 686, 859, 2128, 2299, 2361
HpyCH4IV	ACGT	5 cut(s)	294, 404, 463, 820, 2241
HpyF3I	CTNAG	5 cut(s)	524, 545, 652, 715, 1771
HpySE526I	ACGT	5 cut(s)	294, 404, 463, 820, 2241
HspAI	GCGC	2 cut(s)	62, 824
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	5 cut(s)	103, 232, 1961, 2038, 2383
LguI	GCTCTTC	1 cut(s)	1606
LmnI	GCTCC	7 cut(s)	358, 386, 1151, 1748, 1755, 2006, 2335
Lsp1109I	GCAGC	6 cut(s)	736, 1046, 1598, 1603, 1838, 1862
LweI	GCATC	5 cut(s)	516, 749, 1222, 1604, 1907
MaeI	CTAG	7 cut(s)	665, 804, 923, 1311, 2048, 2268, 2351
MaeII	ACGT	5 cut(s)	294, 404, 463, 820, 2241
MaeIII	GTNAC	8 cut(s)	426, 964, 1200, 1451, 1507, 2128, 2188, 2368
MalI	GATC	5 cut(s)	105, 234, 1963, 2040, 2385
MboI	GATC	5 cut(s)	103, 232, 1961, 2038, 2383
MfeI	CAATTG	3 cut(s)	215, 888, 1245
MflI	RGATCY	2 cut(s)	1961, 2038
MhlI	GDGCHC	6 cut(s)	551, 664, 1408, 1737, 1760, 2093
MlsI	TGGCCA	1 cut(s)	1226
MluNI	TGGCCA	1 cut(s)	1226
MlyI	GAGTC	3 cut(s)	131, 707, 1876
MmeI	TCCRAC	2 cut(s)	841, 916
Mox20I	TGGCCA	1 cut(s)	1226
MroXI	GAANNNNTTC	3 cut(s)	785, 900, 2406
MscI	TGGCCA	1 cut(s)	1226
MseI	TTAA	7 cut(s)	125, 288, 974, 1239, 1380, 1860, 2423
Msp20I	TGGCCA	1 cut(s)	1226
MspA1I	CMGCKG	1 cut(s)	656
MspCI	CTTAAG	1 cut(s)	973
MspI	CCGG	3 cut(s)	1107, 1730, 2042
MspR9I	CCNGG	4 cut(s)	1520, 1730, 1731, 2043
MunI	CAATTG	3 cut(s)	215, 888, 1245
MvaI	CCWGG	1 cut(s)	1520
MvnI	CGCG	1 cut(s)	826
NciI	CCSGG	3 cut(s)	1730, 1731, 2043
NcoI	CCATGG	1 cut(s)	2034
NdeII	GATC	5 cut(s)	103, 232, 1961, 2038, 2383
NlaIV	GGNNCC	5 cut(s)	816, 1736, 1757, 2040, 2280
NmuCI	GTSAC	4 cut(s)	964, 1451, 2128, 2368
NspI	RCATGY	1 cut(s)	982
NspV	TTCGAA	1 cut(s)	197
PagI	TCATGA	2 cut(s)	229, 2235
PciSI	GCTCTTC	1 cut(s)	1606
PcsI	WCGNNNNNNNCGW	1 cut(s)	942
PdmI	GAANNNNTTC	3 cut(s)	785, 900, 2406
PfeI	GAWTC	4 cut(s)	224, 500, 1356, 1653
PflMI	CCANNNNNTGG	3 cut(s)	1190, 1448, 2380
PkrI	GCNGC	7 cut(s)	751, 951, 1036, 1588, 1618, 1828, 1852
PleI	GAGTC	3 cut(s)	131, 707, 1876
PmaCI	CACGTG	1 cut(s)	821
PmlI	CACGTG	1 cut(s)	821
PpsI	GAGTC	3 cut(s)	131, 707, 1876
Ppu21I	YACGTR	1 cut(s)	821
PshBI	ATTAAT	1 cut(s)	1239
PsiI	TTATAA	1 cut(s)	537
Psp124BI	GAGCTC	1 cut(s)	1408
Psp6I	CCWGG	1 cut(s)	1518
PspCI	CACGTG	1 cut(s)	821
PspFI	CCCAGC	3 cut(s)	607, 656, 1013
PspGI	CCWGG	1 cut(s)	1518
PspN4I	GGNNCC	5 cut(s)	816, 1736, 1757, 2040, 2280
PspPI	GGNCC	6 cut(s)	596, 938, 1049, 1181, 1630, 1667
PstNI	CAGNNNCTG	1 cut(s)	1469
PsuI	RGATCY	2 cut(s)	1961, 2038
PvuII	CAGCTG	1 cut(s)	656
RsaI	GTAC	8 cut(s)	407, 519, 1707, 1816, 1868, 2116, 2223, 2341
RsaNI	GTAC	8 cut(s)	406, 518, 1706, 1815, 1867, 2115, 2222, 2340
SacI	GAGCTC	1 cut(s)	1408
SapI	GCTCTTC	1 cut(s)	1606
SaqAI	TTAA	7 cut(s)	125, 288, 974, 1239, 1380, 1860, 2423
SatI	GCNGC	7 cut(s)	750, 950, 1035, 1587, 1617, 1827, 1851
Sau3AI	GATC	5 cut(s)	103, 232, 1961, 2038, 2383
Sau96I	GGNCC	6 cut(s)	596, 938, 1049, 1181, 1630, 1667
SchI	GAGTC	3 cut(s)	131, 707, 1876
ScrFI	CCNGG	4 cut(s)	1520, 1730, 1731, 2043
SduI	GDGCHC	6 cut(s)	551, 664, 1408, 1737, 1760, 2093
SfaNI	GCATC	5 cut(s)	516, 749, 1222, 1604, 1907
SfcI	CTRYAG	3 cut(s)	242, 268, 855
SfuI	TTCGAA	1 cut(s)	197
SinI	GGWCC	4 cut(s)	596, 938, 1181, 1667
SmaI	CCCGGG	1 cut(s)	1731
SmlI	CTYRAG	4 cut(s)	254, 422, 973, 2343
SmoI	CTYRAG	4 cut(s)	254, 422, 973, 2343
SsiI	CCGC	2 cut(s)	826, 950
SspI	AATATT	1 cut(s)	565
SspMI	CTAG	7 cut(s)	665, 804, 923, 1311, 2048, 2268, 2351
SstI	GAGCTC	1 cut(s)	1408
StyD4I	CCNGG	4 cut(s)	1518, 1728, 1729, 2041
StyI	CCWWGG	3 cut(s)	1082, 1227, 2034
TaaI	ACNGT	6 cut(s)	188, 686, 859, 2128, 2299, 2361
TaiI	ACGT	5 cut(s)	297, 407, 466, 823, 2244
TaqI	TCGA	6 cut(s)	106, 197, 904, 1006, 1045, 1661
TatI	WGTACW	4 cut(s)	517, 1705, 1866, 2114
TauI	GCSGC	1 cut(s)	952
TfiI	GAWTC	4 cut(s)	224, 500, 1356, 1653
Tru1I	TTAA	7 cut(s)	125, 288, 974, 1239, 1380, 1860, 2423
Tru9I	TTAA	7 cut(s)	125, 288, 974, 1239, 1380, 1860, 2423
TscAI	CASTG	3 cut(s)	193, 696, 2137
TseFI	GTSAC	4 cut(s)	964, 1451, 2128, 2368
TseI	GCWGC	6 cut(s)	749, 1034, 1586, 1616, 1826, 1850
Tsp45I	GTSAC	4 cut(s)	964, 1451, 2128, 2368
TspMI	CCCGGG	1 cut(s)	1729
TspRI	CASTG	3 cut(s)	193, 696, 2137
Van91I	CCANNNNNTGG	3 cut(s)	1190, 1448, 2380
Vha464I	CTTAAG	1 cut(s)	973
VpaK11BI	GGWCC	4 cut(s)	596, 938, 1181, 1667
VspI	ATTAAT	1 cut(s)	1239
XapI	RAATTY	2 cut(s)	192, 1119
XceI	RCATGY	1 cut(s)	982
XcmI	CCANNNNNNNNNTGG	1 cut(s)	467
XmaI	CCCGGG	1 cut(s)	1729
XmiI	GTMKAC	2 cut(s)	2301, 2356
XmnI	GAANNNNTTC	3 cut(s)	785, 900, 2406
XspI	CTAG	7 cut(s)	665, 804, 923, 1311, 2048, 2268, 2351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.