Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8154878.1

Orthogroup ID

OG0006269

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 655

Gene Structure 655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8154878.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 407 bp

cttgagttacctgaaggagtatggacacaagaaggaggccaacgtaatgctggtgaaggaattgtgattggttttgtggattctggcatcaaccctgtacatctaagttttgcttataatcctctgagccctttcacctctaatatttctcatttttcgggtgcttgtgagactggtcctctcttcccagcaacttcatgcaatggtaaaatagtttcagccaagtttttctcagctggggctctagccattgctactctcaacagttcagtggattttctttcaccttttgactcagatggacatggcagtcatgtggcatcggttgctgctggaaatgctggagttcctgtggttgtgaatggcttctattatggacaagctagtggaatggcaccacgtgcgcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0032501 GO:0032502 GO:0042335 GO:0043170 GO:0044238 GO:0048856 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

136

Amino Acids

13.89

Weight (kDa)

5.35

Isoelectric Point (pI)

35.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62340
fragaria_vesca	FvH4_3g01420
malus_domestica	MD05G1352200.v1.1 MD10G1326200.v1.1
prunus_persica	Prupe.4G015500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0002151 RchiOBHm_Chr5g0002191
rosa_laevigata	RLG00000031001 RLG00000031002 RLG00000031007
rosa_multiflora	Rmu_co8154878.1_g000001 Rmu_sc0001492.1_g000001 Rmu_sc0007900.1_g000001 Rmu_sc0013155.1_g000003 Rmu_ssc0000001.1_g000005
rosa_roxburghii	Rroxscaffold_1G00073760
rosa_rugosa	Rorug04G0394700
rosa_samantha	Rh5AG016500 Rh5AG016600 Rh5AG017100 Rh5BG020000 Rh5CG017800 Rh5CG017900 Rh5CG018800 Rh5DG018000
rosa_wichuraiana	Rw2G029690 Rw5G001610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	117
AasI	GACNNNNNNGTC	1 cut(s)	309
AccB1I	GGYRCC	1 cut(s)	394
AccII	CGCG	1 cut(s)	406
AcuI	CTGAAG	1 cut(s)	33
AcvI	CACGTG	1 cut(s)	401
AdeI	CACNNNGTG	1 cut(s)	401
AfaI	GTAC	1 cut(s)	99
AluBI	AGCT	2 cut(s)	236, 383
AluI	AGCT	2 cut(s)	236, 383
Alw26I	GTCTC	1 cut(s)	164
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	329
Asp700I	GAANNNNTTC	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	406
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	3 cut(s)	65, 127, 276
AvaII	GGWCC	1 cut(s)	176
BanI	GGYRCC	1 cut(s)	394
BanII	GRGCYC	2 cut(s)	131, 244
BbrPI	CACGTG	1 cut(s)	401
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	1 cut(s)	293
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	2 cut(s)	245, 384
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	396
BmsI	GCATC	2 cut(s)	96, 329
BpmI	CTGGAG	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	23
BsaAI	YACGTR	1 cut(s)	401
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bse1I	ACTGG	1 cut(s)	178
Bse3DI	GCAATG	2 cut(s)	208, 249
BseMI	GCAATG	2 cut(s)	208, 249
BseMII	CTCAG	3 cut(s)	116, 246, 309
BseNI	ACTGG	1 cut(s)	178
BseXI	GCAGC	1 cut(s)	316
BseYI	CCCAGC	2 cut(s)	187, 236
Bsh1236I	CGCG	1 cut(s)	406
BshFI	GGCC	1 cut(s)	39
BshNI	GGYRCC	1 cut(s)	394
BsmAI	GTCTC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	39
Bsp1286I	GDGCHC	2 cut(s)	131, 244
Bsp1407I	TGTACA	1 cut(s)	97
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	3 cut(s)	117, 245, 308
BspFNI	CGCG	1 cut(s)	406
BspLI	GGNNCC	1 cut(s)	396
BspT107I	GGYRCC	1 cut(s)	394
BsrDI	GCAATG	2 cut(s)	208, 249
BsrGI	TGTACA	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	266
Bst6I	CTCTTC	1 cut(s)	188
BstAPI	GCANNNNNTGC	2 cut(s)	326, 401
BstAUI	TGTACA	1 cut(s)	97
BstBAI	YACGTR	1 cut(s)	401
BstDEI	CTNAG	4 cut(s)	104, 125, 232, 295
BstFNI	CGCG	1 cut(s)	406
BstHHI	GCGC	1 cut(s)	406
BstMAI	GTCTC	1 cut(s)	164
BstMWI	GCNNNNNNNGC	3 cut(s)	326, 338, 401
BstUI	CGCG	1 cut(s)	406
BstV1I	GCAGC	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	276
CfoI	GCGC	1 cut(s)	406
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	98
CviAII	CATG	3 cut(s)	198, 305, 314
CviJI	RGCY	8 cut(s)	39, 129, 221, 236, 242, 248, 366, 383
CviKI_1	RGCY	8 cut(s)	39, 129, 221, 236, 242, 248, 366, 383
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	4 cut(s)	104, 125, 232, 295
DraIII	CACNNNGTG	1 cut(s)	401
DrdI	GACNNNNNNGTC	1 cut(s)	309
DseDI	GACNNNNNNGTC	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
Eco24I	GRGCYC	2 cut(s)	131, 244
Eco47I	GGWCC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	33
Eco72I	CACGTG	1 cut(s)	401
EcoT38I	GRGCYC	2 cut(s)	131, 244
FaeI	CATG	3 cut(s)	201, 308, 317
FaiI	YATR	6 cut(s)	22, 117, 199, 306, 315, 375
FalI	AAGNNNNNCTT	2 cut(s)	97, 129
FatI	CATG	3 cut(s)	197, 304, 313
Fnu4HI	GCNGC	1 cut(s)	330
FriOI	GRGCYC	2 cut(s)	131, 244
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	2 cut(s)	245, 384
GlaI	GCGC	1 cut(s)	405
GluI	GCNGC	1 cut(s)	330
GsaI	CCCAGC	2 cut(s)	191, 240
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	1 cut(s)	39
HhaI	GCGC	1 cut(s)	406
Hin1II	CATG	3 cut(s)	201, 308, 317
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HinfI	GANTC	2 cut(s)	80, 293
HphI	GGTGA	3 cut(s)	65, 127, 276
Hpy188I	TCNGA	2 cut(s)	126, 298
HpyAV	CCTTC	3 cut(s)	8, 26, 50
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	2 cut(s)	43, 400
HpyCH4V	TGCA	1 cut(s)	201
HpyF10VI	GCNNNNNNNGC	3 cut(s)	326, 338, 401
HpyF3I	CTNAG	4 cut(s)	104, 125, 232, 295
HpySE526I	ACGT	2 cut(s)	43, 400
Hsp92II	CATG	3 cut(s)	201, 308, 317
HspAI	GCGC	1 cut(s)	404
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	2 cut(s)	96, 329
MaeI	CTAG	2 cut(s)	245, 384
MaeII	ACGT	2 cut(s)	43, 400
MaeIII	GTNAC	1 cut(s)	6
MboII	GAAGA	1 cut(s)	175
MhlI	GDGCHC	2 cut(s)	131, 244
MluCI	AATT	1 cut(s)	60
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	4 cut(s)	29, 132, 148, 189
MroXI	GAANNNNTTC	1 cut(s)	365
MspA1I	CMGCKG	1 cut(s)	236
MvnI	CGCG	1 cut(s)	406
MwoI	GCNNNNNNNGC	3 cut(s)	326, 338, 401
NlaIII	CATG	3 cut(s)	201, 308, 317
NlaIV	GGNNCC	1 cut(s)	396
PdmI	GAANNNNTTC	1 cut(s)	365
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	1 cut(s)	287
PmaCI	CACGTG	1 cut(s)	401
PmlI	CACGTG	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	287
Ppu21I	YACGTR	1 cut(s)	401
PsiI	TTATAA	1 cut(s)	117
PspCI	CACGTG	1 cut(s)	401
PspFI	CCCAGC	2 cut(s)	187, 236
PspN4I	GGNNCC	1 cut(s)	396
PspPI	GGNCC	1 cut(s)	176
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
SatI	GCNGC	1 cut(s)	330
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	1 cut(s)	287
SduI	GDGCHC	2 cut(s)	131, 244
SetI	ASST	7 cut(s)	13, 46, 140, 238, 289, 385, 403
SfaNI	GCATC	2 cut(s)	96, 329
SinI	GGWCC	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	2
SmoI	CTYRAG	1 cut(s)	2
Sse9I	AATT	1 cut(s)	60
SspI	AATATT	1 cut(s)	145
SspMI	CTAG	2 cut(s)	245, 384
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	2 cut(s)	46, 403
TasI	AATT	1 cut(s)	60
TatI	WGTACW	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	80
TscAI	CASTG	1 cut(s)	276
TseI	GCWGC	1 cut(s)	329
TspDTI	ATGAA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	176
XcmI	CCANNNNNNNNNTGG	1 cut(s)	47
XmnI	GAANNNNTTC	1 cut(s)	365
XspI	CTAG	2 cut(s)	245, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.