Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006269

Physical Location & Seq

Genomic Coordinates Forward (+)

1369944 .. 1373410

Gene Structure 3467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G001610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2472 bp

ATGCAATCAAGCATGGCAACTGCAAGAGCCAATATCTTATTGCCTTTGTTTTGTTTCATAGCGCTTCTCGCTTCTGTGATGTTTACTGCTTTTTCAGCAGAAGATCGAGCTATATACTTGGTTTTAATGGAAGGAGACTCACTTGCATTCAATGGAGGCTCTCCATCTTCACGCCTCAACCTAAACAGTGAAATTTCGAAGGCTCATGCAAAGCAATTGGAGGATTCTCATGATCAACTTCTACAGAGCAATCTTGAGACTGGAAGCTACAGCAAGCTTTACAGCTTTAAACACGTTGCAAACGGCTTTGCTGTCCATACAACCCCTTCACAGGCTGAAAAGCTGAAATATGCTCCAAGTGTAAAGCTGGTTGAGAGAGATAGAGGAGCGAAGTTGATGACAACGTACACTCCTCGCTTCCTTGAGTTACCTGAAGGAGTATGGACACAAGAAGGAGGCCAACGTAATGCTGGTGAAGGAATTGTGATTGGTTTTGTGGATTCTGGCATCAACCCTGTACATCTAAGTTTTGCTTATAATCCTCTGAGCCCTTTCACCTCTAATATTTCTCATTTTTCGGGTGCTTGTGAGACTGGTCCTCTCTTCCCAGCAACTTCATGCAATGGTAAAATAGTTTCAGCCAAGTTTTTCTCAGCTGGGGCTCTAGCCATTGCTACTCTCAACAGTTCAGTGGATTTTCTTTCACCTTTTGACTCAGATGGACATGGCAGTCATGTGGCATCGGTTGCTGCTGGAAATGCTGGAGTTCCTGTGGTTGTGAATGGCTTCTATTATGGACAAGCTAGTGGAATGGCACCACGTGCGCGGATTGCTGTATATAAAGCTGTGTATCCTACAGTTGGAACTTTGGCAGATGTAGTTTCTGCAATTGATGAAGCAATTCGAGATGGAGTGGATGTCCTAGCACTCTCTGTCGGACCAGACGAACCGCCATTGGGTAGAGTGACCTTCTTAAGCATGTTTGATGTGTTCATGTTATATGCTCGACGAGCTGGGGTTTTTGTGGTGCAAGCAGCAGGTAATCGAGGGCCAGACCCTTCAAGTGTAGTGTCTTACAGCCCTTGGGCAGTGGGTGTAGCTTCTTCCGGCACAGATAGAATTTATCCTTCTTCTATTGTTCTTGGAAATGGAGCAAGAATTGAAGGTGTGGGATTATCAGGACCAACTTTTGGATATAGGTTACTTCAACATAGGTTGGTTTTGGCCAAGGATGCAATTAATCCAATTGGGTCATTCCCAAGAACCCCACCCTATGTTGAAGAGTGCCAATTTCCACAAGCATTGGATCCTAGGTTAGTTATAGGTAGTATTGTCATCTGCACATTCTCGGAGGGATTCTATAACAGGACATCCACCCTTAATGCCATCATCAACACGGCAAGAGCTCTCGGATTTATGGGTTTTGTTCTTGTTGCAAGTCCAGCCTATGGTGACTTCATTGCAGAGCCTGTTCCTTTTGCTGTTTCTGGCATTTTGGTCCCAAATGTAACCAATTCCCAGGTTATTTTACAATACTATGAACAACAAACATTCAAGGATGAGAGAGGATTTCCTACAAGACTTGCAGCGAGAGCATCAATCGGAGAAGGAAGAGCTGCTTCTTTCACGGGCCAAGCACCTATTGTTAGCAGATTCTCTTCGAGAGGACCAGATTTCATTGACAGAGACAGGAAGCCTGCTGACGTACTAAAGCCTGATATTCTTGCCCCGGGGCACCAAATCTGGGGAGCTTGGAGCCCCATTAGTGCCTTAGAACCCTCATTAGTGGGACAAAGTTTTGCACTACTTTCTGGTACAAGCATGGCAACACCTCATATGGCTGGAATAGCAGCACTTATTAAGCAGTACAATCCTTCATGGACTCCTTCCATGATTGCATCTGCGATTTCCACCACGGCAACCAAATATGATAAAAATGGAGAACTGATAATGGCTGAAGGATCTGATATAGGCAGTAAATATCCCTCCACTCCTTTTGATTTTGGAGCTGGCTTTGTCAGTCCAAGTCATTCCATGGATCCGGGTCTAGTCTTATCTTCAGGATATGAAGACTACATCAGCTTCTTGTGCTCATTGCATGATACCAATCCAAGTACAATAAGAACTGTCACTGGAGAGTTGTGCAACAAGCCACTTGACCATCCAGCCAATCTGAACCTTCCTTCAGTAACAATATCAGCATTGAATGGGTCTCAAATAGTACGAAGGGTTTTCATGAACGTCGAGAGCAAGCCAGAGACTTACTCTAGCTCGGTGCTGCCTCCTAATGGGACAACAGTAGACATATCTCCTCCTTCGTTTACCATAGCTCCACAAGGTACTCAAGAGCTAGGTATACAGTTCAATGTGACCCAAGCAATGGATCAATTCACCTATGGTGAAATCGTTCTTACAGGAAGTTTAAATCATATTGTCAGGATACCTTTATCAGTTTTTCCAGTTTCAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0032501 GO:0032502 GO:0042335 GO:0043170 GO:0044238 GO:0048856 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

823

Amino Acids

87.68

Weight (kDa)

5.79

Isoelectric Point (pI)

33.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	68 - 132	3.9e-12	Peptidase inhibitor I9
Peptidase_S8	PF00082	158 - 647	4.6e-40	Subtilase family
fn3_6	PF17766	724 - 818	2.4e-16	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62340
fragaria_vesca	FvH4_3g01420
malus_domestica	MD05G1352200.v1.1 MD10G1326200.v1.1
prunus_persica	Prupe.4G015500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0002151 RchiOBHm_Chr5g0002191
rosa_laevigata	RLG00000031001 RLG00000031002 RLG00000031007
rosa_multiflora	Rmu_co8154878.1_g000001 Rmu_sc0001492.1_g000001 Rmu_sc0007900.1_g000001 Rmu_sc0013155.1_g000003 Rmu_ssc0000001.1_g000005
rosa_roxburghii	Rroxscaffold_1G00073760
rosa_rugosa	Rorug04G0394700
rosa_samantha	Rh5AG016500 Rh5AG016600 Rh5AG017100 Rh5BG020000 Rh5CG017800 Rh5CG017900 Rh5CG018800 Rh5DG018000
rosa_wichuraiana	Rw2G029690 Rw5G001610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
AasI	GACNNNNNNGTC	1 cut(s)	729
Acc36I	ACCTGC	1 cut(s)	1028
AccB1I	GGYRCC	2 cut(s)	814, 1734
AccB7I	CCANNNNNTGG	3 cut(s)	1190, 1448, 2380
AccI	GTMKAC	2 cut(s)	2301, 2356
AccII	CGCG	1 cut(s)	826
AciI	CCGC	2 cut(s)	826, 950
AclWI	GGATC	6 cut(s)	1301, 1314, 1969, 2033, 2046, 2391
AcoI	YGGCCR	1 cut(s)	1224
AcsI	RAATTY	2 cut(s)	192, 1119
AcuI	CTGAAG	4 cut(s)	453, 1977, 2043, 2169
AcvI	CACGTG	1 cut(s)	821
AdeI	CACNNNGTG	1 cut(s)	821
AfaI	GTAC	8 cut(s)	407, 519, 1707, 1816, 1868, 2116, 2223, 2341
AfeI	AGCGCT	1 cut(s)	63
AfiI	CCNNNNNNNGG	8 cut(s)	331, 860, 956, 1190, 1448, 1744, 2288, 2380
AflII	CTTAAG	1 cut(s)	973
AflIII	ACRYGT	1 cut(s)	292
AgsI	TTSAA	9 cut(s)	151, 1062, 1163, 1208, 1280, 1555, 2206, 2365, 2466
AjnI	CCWGG	1 cut(s)	1518
Alw21I	GWGCWC	2 cut(s)	1408, 2093
Alw26I	GTCTC	6 cut(s)	129, 251, 584, 1680, 2217, 2252
AlwI	GGATC	6 cut(s)	1301, 1314, 1969, 2033, 2046, 2391
AlwNI	CAGNNNCTG	1 cut(s)	1469
Ama87I	CYCGRG	1 cut(s)	1729
Aor51HI	AGCGCT	1 cut(s)	63
AoxI	GGCC	4 cut(s)	457, 1049, 1224, 1630
ApeKI	GCWGC	6 cut(s)	749, 1034, 1586, 1616, 1850, 2278
ApoI	RAATTY	2 cut(s)	192, 1119
AseI	ATTAAT	1 cut(s)	1239
Asp700I	GAANNNNTTC	3 cut(s)	785, 900, 2406
AspA2I	CCTAGG	1 cut(s)	1310
AspLEI	GCGC	2 cut(s)	64, 826
AspS9I	GGNCC	7 cut(s)	596, 938, 1049, 1181, 1498, 1630, 1667
AsuC2I	CCSGG	3 cut(s)	1730, 1731, 2043
AsuHPI	GGTGA	6 cut(s)	485, 547, 696, 1463, 2383, 2411
AsuII	TTCGAA	1 cut(s)	197
AvaI	CYCGRG	1 cut(s)	1729
AvaII	GGWCC	5 cut(s)	596, 938, 1181, 1498, 1667
AvrII	CCTAGG	1 cut(s)	1310
BaeGI	GKGCMC	1 cut(s)	1737
BalI	TGGCCA	1 cut(s)	1226
BamHI	GGATCC	2 cut(s)	1306, 2038
BanI	GGYRCC	2 cut(s)	814, 1734
BanII	GRGCYC	4 cut(s)	551, 664, 1408, 1760
BbrPI	CACGTG	1 cut(s)	821
BbsI	GAAGAC	1 cut(s)	2076
Bbv12I	GWGCWC	2 cut(s)	1408, 2093
BbvI	GCAGC	6 cut(s)	736, 1046, 1598, 1603, 1862, 2265
BccI	CCATC	5 cut(s)	172, 713, 902, 1394, 2169
BceAI	ACGGC	3 cut(s)	319, 1413, 1932
BciT130I	CCWGG	1 cut(s)	1520
BciVI	GTATCC	2 cut(s)	861, 2433
BclI	TGATCA	1 cut(s)	232
BcnI	CCSGG	3 cut(s)	1730, 1731, 2043
BcoDI	GTCTC	6 cut(s)	129, 251, 584, 1680, 2217, 2252
BfaI	CTAG	7 cut(s)	665, 804, 923, 1311, 2048, 2268, 2351
BfmI	CTRYAG	3 cut(s)	242, 268, 855
BfoI	RGCGCY	1 cut(s)	65
BfrI	CTTAAG	1 cut(s)	973
BfuAI	ACCTGC	1 cut(s)	1028
BfuI	GTATCC	2 cut(s)	861, 2433
BisI	GCNGC	6 cut(s)	750, 1035, 1587, 1617, 1851, 2279
BlnI	CCTAGG	1 cut(s)	1310
BlsI	GCNGC	6 cut(s)	751, 1036, 1588, 1618, 1852, 2280
Bme1390I	CCNGG	4 cut(s)	1520, 1730, 1731, 2043
Bme18I	GGWCC	5 cut(s)	596, 938, 1181, 1498, 1667
BmeT110I	CYCGRG	1 cut(s)	1729
BmgT120I	GGNCC	7 cut(s)	596, 938, 1049, 1181, 1498, 1630, 1667
BmiI	GGNNCC	6 cut(s)	816, 1308, 1500, 1736, 1757, 2040
BmrFI	CCNGG	4 cut(s)	1520, 1730, 1731, 2043
BmsI	GCATC	5 cut(s)	516, 749, 1222, 1604, 1907
BpiI	GAAGAC	1 cut(s)	2076
BplI	GAGNNNNNCTC	2 cut(s)	2249, 2281
BpmI	CTGGAG	2 cut(s)	783, 2154
Bpu14I	TTCGAA	1 cut(s)	197
BpuEI	CTTGAG	3 cut(s)	275, 443, 2328
BpuMI	CCSGG	3 cut(s)	1730, 1731, 2043
BsaAI	YACGTR	1 cut(s)	821
BsaBI	GATNNNNATC	1 cut(s)	2106
BsaI	GGTCTC	1 cut(s)	2217
BsaJI	CCNNGG	9 cut(s)	1082, 1227, 1310, 1518, 1728, 1729, 1730, 1914, 2034
BsaXI	ACNNNNNCTCC	8 cut(s)	394, 424, 756, 786, 903, 933, 2314, 2344
Bsc4I	CCNNNNNNNGG	8 cut(s)	331, 860, 956, 1190, 1448, 1744, 2288, 2380
Bse1I	ACTGG	4 cut(s)	265, 598, 2137, 2459
Bse3DI	GCAATG	5 cut(s)	628, 669, 1458, 2093, 2385
Bse8I	GATNNNNATC	1 cut(s)	2106
BseBI	CCWGG	1 cut(s)	1520
BseDI	CCNNGG	9 cut(s)	1082, 1227, 1310, 1518, 1728, 1729, 1730, 1914, 2034
BseGI	GGATG	5 cut(s)	922, 1237, 1370, 1564, 2161
BseJI	GATNNNNATC	1 cut(s)	2106
BseLI	CCNNNNNNNGG	8 cut(s)	331, 860, 956, 1190, 1448, 1744, 2288, 2380
BseMI	GCAATG	5 cut(s)	628, 669, 1458, 2093, 2385
BseMII	CTCAG	3 cut(s)	536, 666, 729
BseNI	ACTGG	4 cut(s)	265, 598, 2137, 2459
BseRI	GAGGAG	3 cut(s)	399, 402, 2301
BseSI	GKGCMC	1 cut(s)	1737
BseXI	GCAGC	6 cut(s)	736, 1046, 1598, 1603, 1862, 2265
BseYI	CCCAGC	3 cut(s)	607, 656, 1013
BsgI	GTGCAG	1 cut(s)	1324
Bsh1236I	CGCG	1 cut(s)	826
BshFI	GGCC	4 cut(s)	459, 1051, 1226, 1632
BshNI	GGYRCC	2 cut(s)	814, 1734
BsiHKAI	GWGCWC	2 cut(s)	1408, 2093
BsiHKCI	CYCGRG	1 cut(s)	1729
BsiSI	CCGG	3 cut(s)	1107, 1730, 2042
BslFI	GGGAC	3 cut(s)	1484, 1803, 2305
BslI	CCNNNNNNNGG	8 cut(s)	331, 860, 956, 1190, 1448, 1744, 2288, 2380
BsmAI	GTCTC	6 cut(s)	129, 251, 584, 1680, 2217, 2252
BsmFI	GGGAC	3 cut(s)	1484, 1803, 2305
BsmI	GAATGC	1 cut(s)	146
BsnI	GGCC	4 cut(s)	459, 1051, 1226, 1632
Bso31I	GGTCTC	1 cut(s)	2217
BsoBI	CYCGRG	1 cut(s)	1729
Bsp119I	TTCGAA	1 cut(s)	197
Bsp1286I	GDGCHC	6 cut(s)	551, 664, 1408, 1737, 1760, 2093
Bsp1407I	TGTACA	1 cut(s)	517
Bsp143I	GATC	6 cut(s)	103, 232, 1306, 1961, 2038, 2383
Bsp19I	CCATGG	1 cut(s)	2034
BspACI	CCGC	2 cut(s)	826, 950
BspANI	GGCC	4 cut(s)	459, 1051, 1226, 1632
BspCNI	CTCAG	3 cut(s)	537, 665, 728
BspFNI	CGCG	1 cut(s)	826
BspHI	TCATGA	2 cut(s)	229, 2235
BspLI	GGNNCC	6 cut(s)	816, 1308, 1500, 1736, 1757, 2040
BspMI	ACCTGC	1 cut(s)	1028
BspPI	GGATC	6 cut(s)	1301, 1314, 1969, 2033, 2046, 2391
BspQI	GCTCTTC	1 cut(s)	1606
BspT104I	TTCGAA	1 cut(s)	197
BspT107I	GGYRCC	2 cut(s)	814, 1734
BspTI	CTTAAG	1 cut(s)	973
BspTNI	GGTCTC	1 cut(s)	2217
BsrDI	GCAATG	5 cut(s)	628, 669, 1458, 2093, 2385
BsrGI	TGTACA	1 cut(s)	517
BsrI	ACTGG	4 cut(s)	265, 598, 2137, 2459
BssECI	CCNNGG	9 cut(s)	1082, 1227, 1310, 1518, 1728, 1729, 1730, 1914, 2034
BssMI	GATC	6 cut(s)	103, 232, 1306, 1961, 2038, 2383
BssNAI	GTATAC	1 cut(s)	2357
BssT1I	CCWWGG	4 cut(s)	1082, 1227, 1310, 2034
Bst1107I	GTATAC	1 cut(s)	2357
Bst2UI	CCWGG	1 cut(s)	1520
Bst4CI	ACNGT	6 cut(s)	188, 686, 859, 2128, 2299, 2361
Bst6I	CTCTTC	4 cut(s)	608, 1275, 1606, 1663
BstAFI	CTTAAG	1 cut(s)	973
BstAPI	GCANNNNNTGC	2 cut(s)	746, 821
BstAUI	TGTACA	1 cut(s)	517
BstBAI	YACGTR	1 cut(s)	821
BstBI	TTCGAA	1 cut(s)	197
BstC8I	GCNNGC	5 cut(s)	275, 1032, 1698, 2011, 2252
BstDEI	CTNAG	5 cut(s)	524, 545, 652, 715, 1771
BstDSI	CCRYGG	2 cut(s)	1914, 2034
BstF5I	GGATG	5 cut(s)	922, 1237, 1370, 1564, 2161
BstFNI	CGCG	1 cut(s)	826
BstH2I	RGCGCY	1 cut(s)	65
BstHHI	GCGC	2 cut(s)	64, 826
BstKTI	GATC	6 cut(s)	106, 235, 1309, 1964, 2041, 2386
BstMAI	GTCTC	6 cut(s)	129, 251, 584, 1680, 2217, 2252
BstMBI	GATC	6 cut(s)	103, 232, 1306, 1961, 2038, 2383
BstNI	CCWGG	1 cut(s)	1520
BstNSI	RCATGY	1 cut(s)	982
BstSCI	CCNGG	4 cut(s)	1518, 1728, 1729, 2041
BstSFI	CTRYAG	3 cut(s)	242, 268, 855
BstSLI	GKGCMC	1 cut(s)	1737
BstUI	CGCG	1 cut(s)	826
BstV1I	GCAGC	6 cut(s)	736, 1046, 1598, 1603, 1862, 2265
BstV2I	GAAGAC	1 cut(s)	2076
BstX2I	RGATCY	3 cut(s)	1306, 1961, 2038
BstYI	RGATCY	3 cut(s)	1306, 1961, 2038
BstZ17I	GTATAC	1 cut(s)	2357
BsuI	GTATCC	2 cut(s)	861, 2433
BsuRI	GGCC	4 cut(s)	459, 1051, 1226, 1632
BtgI	CCRYGG	2 cut(s)	1914, 2034
BtsCI	GGATG	5 cut(s)	922, 1237, 1370, 1564, 2161
BtsI	GCAGTG	1 cut(s)	1095
BtsIMutI	CAGTG	4 cut(s)	193, 696, 1095, 2130
BveI	ACCTGC	1 cut(s)	1028
Cac8I	GCNNGC	5 cut(s)	275, 1032, 1698, 2011, 2252
CaiI	CAGNNNCTG	1 cut(s)	1469
CciI	TCATGA	2 cut(s)	229, 2235
CfoI	GCGC	2 cut(s)	64, 826
Cfr13I	GGNCC	7 cut(s)	596, 938, 1049, 1181, 1498, 1630, 1667
Cfr9I	CCCGGG	1 cut(s)	1729
Csp6I	GTAC	8 cut(s)	406, 518, 1706, 1815, 1867, 2115, 2222, 2340
CspCI	CAANNNNNGTGG	4 cut(s)	1284, 1319, 1978, 2013
CviQI	GTAC	8 cut(s)	406, 518, 1706, 1815, 1867, 2115, 2222, 2340
DdeI	CTNAG	5 cut(s)	524, 545, 652, 715, 1771
DpnI	GATC	6 cut(s)	105, 234, 1308, 1963, 2040, 2385
DpnII	GATC	6 cut(s)	103, 232, 1306, 1961, 2038, 2383
DraI	TTTAAA	2 cut(s)	289, 2424
DraIII	CACNNNGTG	1 cut(s)	821
DrdI	GACNNNNNNGTC	1 cut(s)	729
DseDI	GACNNNNNNGTC	1 cut(s)	729
EaeI	YGGCCR	1 cut(s)	1224
Eam1104I	CTCTTC	4 cut(s)	608, 1275, 1606, 1663
EarI	CTCTTC	4 cut(s)	608, 1275, 1606, 1663
Ecl136II	GAGCTC	1 cut(s)	1406
Eco130I	CCWWGG	4 cut(s)	1082, 1227, 1310, 2034
Eco24I	GRGCYC	4 cut(s)	551, 664, 1408, 1760
Eco31I	GGTCTC	1 cut(s)	2217
Eco47I	GGWCC	5 cut(s)	596, 938, 1181, 1498, 1667
Eco47III	AGCGCT	1 cut(s)	63
Eco53kI	GAGCTC	1 cut(s)	1406
Eco57I	CTGAAG	4 cut(s)	453, 1977, 2043, 2169
Eco72I	CACGTG	1 cut(s)	821
Eco88I	CYCGRG	1 cut(s)	1729
EcoICRI	GAGCTC	1 cut(s)	1406
EcoRII	CCWGG	1 cut(s)	1518
EcoT14I	CCWWGG	4 cut(s)	1082, 1227, 1310, 2034
EcoT38I	GRGCYC	4 cut(s)	551, 664, 1408, 1760
ErhI	CCWWGG	4 cut(s)	1082, 1227, 1310, 2034
FalI	AAGNNNNNCTT	4 cut(s)	517, 549, 1603, 1635
FaqI	GGGAC	3 cut(s)	1484, 1803, 2305
FauNDI	CATATG	1 cut(s)	1836
FbaI	TGATCA	1 cut(s)	232
FblI	GTMKAC	2 cut(s)	2301, 2356
Fnu4HI	GCNGC	6 cut(s)	750, 1035, 1587, 1617, 1851, 2279
FokI	GGATG	5 cut(s)	929, 1244, 1357, 1571, 2148
FriOI	GRGCYC	4 cut(s)	551, 664, 1408, 1760
Fsp4HI	GCNGC	6 cut(s)	750, 1035, 1587, 1617, 1851, 2279
FspBI	CTAG	7 cut(s)	665, 804, 923, 1311, 2048, 2268, 2351
GlaI	GCGC	2 cut(s)	63, 825
GluI	GCNGC	6 cut(s)	750, 1035, 1587, 1617, 1851, 2279
GsaI	CCCAGC	3 cut(s)	611, 660, 1017
GsuI	CTGGAG	2 cut(s)	783, 2154
HaeII	RGCGCY	1 cut(s)	65
HaeIII	GGCC	4 cut(s)	459, 1051, 1226, 1632
HapII	CCGG	3 cut(s)	1107, 1730, 2042
HhaI	GCGC	2 cut(s)	64, 826
Hin6I	GCGC	2 cut(s)	62, 824
HinP1I	GCGC	2 cut(s)	62, 824
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	7 cut(s)	137, 224, 500, 713, 1356, 1653, 1882
HpaII	CCGG	3 cut(s)	1107, 1730, 2042
HphI	GGTGA	6 cut(s)	485, 547, 696, 1463, 2383, 2411
Hpy166II	GTNNAC	5 cut(s)	84, 408, 2302, 2322, 2357
Hpy188I	TCNGA	8 cut(s)	546, 718, 938, 1351, 1412, 1604, 1966, 2175
Hpy8I	GTNNAC	5 cut(s)	84, 408, 2302, 2322, 2357
Hpy99I	CGWCG	2 cut(s)	1011, 2246
HpyCH4III	ACNGT	6 cut(s)	188, 686, 859, 2128, 2299, 2361
HpyCH4IV	ACGT	6 cut(s)	294, 404, 463, 820, 1704, 2241
HpyF3I	CTNAG	5 cut(s)	524, 545, 652, 715, 1771
HpySE526I	ACGT	6 cut(s)	294, 404, 463, 820, 1704, 2241
HspAI	GCGC	2 cut(s)	62, 824
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	6 cut(s)	103, 232, 1306, 1961, 2038, 2383
LguI	GCTCTTC	1 cut(s)	1606
LmnI	GCTCC	7 cut(s)	358, 386, 1151, 1748, 1755, 2006, 2335
Lsp1109I	GCAGC	6 cut(s)	736, 1046, 1598, 1603, 1862, 2265
LweI	GCATC	5 cut(s)	516, 749, 1222, 1604, 1907
MaeI	CTAG	7 cut(s)	665, 804, 923, 1311, 2048, 2268, 2351
MaeII	ACGT	6 cut(s)	294, 404, 463, 820, 1704, 2241
MaeIII	GTNAC	8 cut(s)	426, 964, 1200, 1451, 1507, 2128, 2188, 2368
MalI	GATC	6 cut(s)	105, 234, 1308, 1963, 2040, 2385
MboI	GATC	6 cut(s)	103, 232, 1306, 1961, 2038, 2383
MfeI	CAATTG	3 cut(s)	215, 888, 1245
MflI	RGATCY	3 cut(s)	1306, 1961, 2038
MhlI	GDGCHC	6 cut(s)	551, 664, 1408, 1737, 1760, 2093
MlsI	TGGCCA	1 cut(s)	1226
MluNI	TGGCCA	1 cut(s)	1226
MlyI	GAGTC	3 cut(s)	131, 707, 1876
MmeI	TCCRAC	2 cut(s)	841, 916
Mox20I	TGGCCA	1 cut(s)	1226
MroXI	GAANNNNTTC	3 cut(s)	785, 900, 2406
MscI	TGGCCA	1 cut(s)	1226
MseI	TTAA	7 cut(s)	125, 288, 974, 1239, 1380, 1860, 2423
Msp20I	TGGCCA	1 cut(s)	1226
MspA1I	CMGCKG	1 cut(s)	656
MspCI	CTTAAG	1 cut(s)	973
MspI	CCGG	3 cut(s)	1107, 1730, 2042
MspR9I	CCNGG	4 cut(s)	1520, 1730, 1731, 2043
MunI	CAATTG	3 cut(s)	215, 888, 1245
Mva1269I	GAATGC	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	1520
MvnI	CGCG	1 cut(s)	826
NciI	CCSGG	3 cut(s)	1730, 1731, 2043
NcoI	CCATGG	1 cut(s)	2034
NdeI	CATATG	1 cut(s)	1836
NdeII	GATC	6 cut(s)	103, 232, 1306, 1961, 2038, 2383
NlaIV	GGNNCC	6 cut(s)	816, 1308, 1500, 1736, 1757, 2040
NmuCI	GTSAC	4 cut(s)	964, 1451, 2128, 2368
NspI	RCATGY	1 cut(s)	982
NspV	TTCGAA	1 cut(s)	197
PagI	TCATGA	2 cut(s)	229, 2235
PciSI	GCTCTTC	1 cut(s)	1606
PcsI	WCGNNNNNNNCGW	1 cut(s)	942
PctI	GAATGC	1 cut(s)	146
PdmI	GAANNNNTTC	3 cut(s)	785, 900, 2406
PfeI	GAWTC	4 cut(s)	224, 500, 1356, 1653
PflMI	CCANNNNNTGG	3 cut(s)	1190, 1448, 2380
PkrI	GCNGC	6 cut(s)	751, 1036, 1588, 1618, 1852, 2280
PleI	GAGTC	3 cut(s)	131, 707, 1876
PmaCI	CACGTG	1 cut(s)	821
PmlI	CACGTG	1 cut(s)	821
PpsI	GAGTC	3 cut(s)	131, 707, 1876
Ppu21I	YACGTR	1 cut(s)	821
PshBI	ATTAAT	1 cut(s)	1239
PsiI	TTATAA	1 cut(s)	537
Psp124BI	GAGCTC	1 cut(s)	1408
Psp6I	CCWGG	1 cut(s)	1518
PspCI	CACGTG	1 cut(s)	821
PspFI	CCCAGC	3 cut(s)	607, 656, 1013
PspGI	CCWGG	1 cut(s)	1518
PspN4I	GGNNCC	6 cut(s)	816, 1308, 1500, 1736, 1757, 2040
PspPI	GGNCC	7 cut(s)	596, 938, 1049, 1181, 1498, 1630, 1667
PstNI	CAGNNNCTG	1 cut(s)	1469
PsuI	RGATCY	3 cut(s)	1306, 1961, 2038
PvuII	CAGCTG	1 cut(s)	656
RsaI	GTAC	8 cut(s)	407, 519, 1707, 1816, 1868, 2116, 2223, 2341
RsaNI	GTAC	8 cut(s)	406, 518, 1706, 1815, 1867, 2115, 2222, 2340
SacI	GAGCTC	1 cut(s)	1408
SapI	GCTCTTC	1 cut(s)	1606
SaqAI	TTAA	7 cut(s)	125, 288, 974, 1239, 1380, 1860, 2423
SatI	GCNGC	6 cut(s)	750, 1035, 1587, 1617, 1851, 2279
Sau3AI	GATC	6 cut(s)	103, 232, 1306, 1961, 2038, 2383
Sau96I	GGNCC	7 cut(s)	596, 938, 1049, 1181, 1498, 1630, 1667
SchI	GAGTC	3 cut(s)	131, 707, 1876
ScrFI	CCNGG	4 cut(s)	1520, 1730, 1731, 2043
SduI	GDGCHC	6 cut(s)	551, 664, 1408, 1737, 1760, 2093
SfaNI	GCATC	5 cut(s)	516, 749, 1222, 1604, 1907
SfcI	CTRYAG	3 cut(s)	242, 268, 855
SfuI	TTCGAA	1 cut(s)	197
SinI	GGWCC	5 cut(s)	596, 938, 1181, 1498, 1667
SmaI	CCCGGG	1 cut(s)	1731
SmlI	CTYRAG	4 cut(s)	254, 422, 973, 2343
SmoI	CTYRAG	4 cut(s)	254, 422, 973, 2343
SsiI	CCGC	2 cut(s)	826, 950
SspI	AATATT	1 cut(s)	565
SspMI	CTAG	7 cut(s)	665, 804, 923, 1311, 2048, 2268, 2351
SstI	GAGCTC	1 cut(s)	1408
StyD4I	CCNGG	4 cut(s)	1518, 1728, 1729, 2041
StyI	CCWWGG	4 cut(s)	1082, 1227, 1310, 2034
TaaI	ACNGT	6 cut(s)	188, 686, 859, 2128, 2299, 2361
TaiI	ACGT	6 cut(s)	297, 407, 466, 823, 1707, 2244
TaqI	TCGA	7 cut(s)	106, 197, 904, 1006, 1045, 1661, 2244
TatI	WGTACW	3 cut(s)	517, 1866, 2114
TfiI	GAWTC	4 cut(s)	224, 500, 1356, 1653
Tru1I	TTAA	7 cut(s)	125, 288, 974, 1239, 1380, 1860, 2423
Tru9I	TTAA	7 cut(s)	125, 288, 974, 1239, 1380, 1860, 2423
TscAI	CASTG	4 cut(s)	193, 696, 1095, 2137
TseFI	GTSAC	4 cut(s)	964, 1451, 2128, 2368
TseI	GCWGC	6 cut(s)	749, 1034, 1586, 1616, 1850, 2278
Tsp45I	GTSAC	4 cut(s)	964, 1451, 2128, 2368
TspMI	CCCGGG	1 cut(s)	1729
TspRI	CASTG	4 cut(s)	193, 696, 1095, 2137
Van91I	CCANNNNNTGG	3 cut(s)	1190, 1448, 2380
Vha464I	CTTAAG	1 cut(s)	973
VpaK11BI	GGWCC	5 cut(s)	596, 938, 1181, 1498, 1667
VspI	ATTAAT	1 cut(s)	1239
XapI	RAATTY	2 cut(s)	192, 1119
XceI	RCATGY	1 cut(s)	982
XcmI	CCANNNNNNNNNTGG	1 cut(s)	467
XmaI	CCCGGG	1 cut(s)	1729
XmaJI	CCTAGG	1 cut(s)	1310
XmiI	GTMKAC	2 cut(s)	2301, 2356
XmnI	GAANNNNTTC	3 cut(s)	785, 900, 2406
XspI	CTAG	7 cut(s)	665, 804, 923, 1311, 2048, 2268, 2351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.