Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006269

Physical Location & Seq

Genomic Coordinates Forward (+)

1192999 .. 1198340

Gene Structure 5342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG016600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAAGTTGCCAAAAAGTTGGAGTACTAATATATGTTCTGAATGTTTAACTGAAGCGGATGTGAAAAAACCTCAGAACTCAGTTACAGCATCACTTGCAGATGATGTCAAGAGCAATCTTGATACCGGAAGCTACAGCAGCTTTAAACACATTGCAAACGGCTTTGCTGTCCATACAACTCCTTCTCAGGAGGAAAAGAAAAGCTTTTATGCATTTCTTAGTGATCATGATCGAATAACATTTCAGGTTGAAAAGCTCAAATATGCTCCAGGAGTAAAGCTGGTTGAGAGAGATAGAGGAGAAAAGTTGATGACAATAACGTACACTCCTCGCCTCCTTGAGTTACCTGAAGGAGTATGGACACAAGAAGGAGGAATATTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0032501 GO:0032502 GO:0042335 GO:0043170 GO:0044238 GO:0048856 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

128

Amino Acids

14.37

Weight (kDa)

6.29

Isoelectric Point (pI)

32.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62340
fragaria_vesca	FvH4_3g01420
malus_domestica	MD05G1352200.v1.1 MD10G1326200.v1.1
prunus_persica	Prupe.4G015500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0002151 RchiOBHm_Chr5g0002191
rosa_laevigata	RLG00000031001 RLG00000031002 RLG00000031007
rosa_multiflora	Rmu_co8154878.1_g000001 Rmu_sc0001492.1_g000001 Rmu_sc0007900.1_g000001 Rmu_sc0013155.1_g000003 Rmu_ssc0000001.1_g000005
rosa_roxburghii	Rroxscaffold_1G00073760
rosa_rugosa	Rorug04G0394700
rosa_samantha	Rh5AG016500 Rh5AG016600 Rh5AG017100 Rh5BG020000 Rh5CG017800 Rh5CG017900 Rh5CG018800 Rh5DG018000
rosa_wichuraiana	Rw2G029690 Rw5G001610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	56
AcuI	CTGAAG	2 cut(s)	72, 369
AfaI	GTAC	2 cut(s)	25, 323
AgsI	TTSAA	1 cut(s)	251
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	5 cut(s)	132, 141, 204, 256, 280
AluI	AGCT	5 cut(s)	132, 141, 204, 256, 280
ApeKI	GCWGC	1 cut(s)	138
AseI	ATTAAT	1 cut(s)	380
BbvI	GCAGC	1 cut(s)	150
BceAI	ACGGC	1 cut(s)	175
BciT130I	CCWGG	1 cut(s)	270
BclI	TGATCA	1 cut(s)	223
BfmI	CTRYAG	1 cut(s)	133
BisI	GCNGC	1 cut(s)	139
BlsI	GCNGC	1 cut(s)	140
BmcAI	AGTACT	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	1 cut(s)	98
BpmI	CTGGAG	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	359
BsaBI	GATNNNNATC	1 cut(s)	228
BsaWI	WCCGGW	1 cut(s)	125
BsaXI	ACNNNNNCTCC	2 cut(s)	310, 340
Bse3DI	GCAATG	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	270
BseGI	GGATG	1 cut(s)	64
BseJI	GATNNNNATC	1 cut(s)	228
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	3 cut(s)	86, 93, 200
BseRI	GAGGAG	2 cut(s)	312, 318
BseXI	GCAGC	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	223, 229
BspACI	CCGC	1 cut(s)	56
BspCNI	CTCAG	3 cut(s)	85, 92, 199
BspHI	TCATGA	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	150
BssMI	GATC	2 cut(s)	223, 229
Bst2UI	CCWGG	1 cut(s)	270
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstDEI	CTNAG	4 cut(s)	72, 79, 186, 218
BstF5I	GGATG	1 cut(s)	64
BstKTI	GATC	2 cut(s)	226, 232
BstMBI	GATC	2 cut(s)	223, 229
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 138
BstNI	CCWGG	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	150
BstXI	CCANNNNNNTGG	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	64
CciI	TCATGA	1 cut(s)	226
Csp6I	GTAC	2 cut(s)	24, 322
CviAII	CATG	1 cut(s)	227
CviJI	RGCY	6 cut(s)	132, 141, 162, 204, 256, 280
CviKI_1	RGCY	6 cut(s)	132, 141, 162, 204, 256, 280
CviQI	GTAC	2 cut(s)	24, 322
DdeI	CTNAG	4 cut(s)	72, 79, 186, 218
DpnI	GATC	2 cut(s)	225, 231
DpnII	GATC	2 cut(s)	223, 229
DraI	TTTAAA	1 cut(s)	145
Eco57I	CTGAAG	2 cut(s)	72, 369
EcoRII	CCWGG	1 cut(s)	268
EcoT22I	ATGCAT	1 cut(s)	214
FaeI	CATG	1 cut(s)	230
FaiI	YATR	7 cut(s)	32, 34, 174, 210, 228, 264, 358
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
FatI	CATG	1 cut(s)	226
FbaI	TGATCA	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	139
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	139
GluI	GCNGC	1 cut(s)	139
GsuI	CTGGAG	1 cut(s)	252
HapII	CCGG	1 cut(s)	126
Hin1II	CATG	1 cut(s)	230
HindIII	AAGCTT	1 cut(s)	202
HpaII	CCGG	1 cut(s)	126
Hpy166II	GTNNAC	1 cut(s)	324
Hpy188I	TCNGA	2 cut(s)	40, 75
Hpy188III	TCNNGA	4 cut(s)	109, 119, 188, 227
Hpy8I	GTNNAC	1 cut(s)	324
HpyAV	CCTTC	3 cut(s)	192, 344, 362
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	3 cut(s)	98, 155, 212
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 138
HpyF3I	CTNAG	4 cut(s)	72, 79, 186, 218
HpySE526I	ACGT	1 cut(s)	320
Hsp92II	CATG	1 cut(s)	230
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	223, 229
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	7 cut(s)	139, 173, 230, 255, 266, 282, 360
Lsp1109I	GCAGC	1 cut(s)	150
LweI	GCATC	1 cut(s)	98
MaeII	ACGT	1 cut(s)	320
MaeIII	GTNAC	2 cut(s)	82, 342
MalI	GATC	2 cut(s)	225, 231
MboI	GATC	2 cut(s)	223, 229
MnlI	CCTC	6 cut(s)	81, 184, 290, 339, 344, 365
Mph1103I	ATGCAT	1 cut(s)	214
MseI	TTAA	3 cut(s)	47, 144, 380
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	2 cut(s)	95, 138
NdeII	GATC	2 cut(s)	223, 229
NlaIII	CATG	1 cut(s)	230
NsiI	ATGCAT	1 cut(s)	214
PagI	TCATGA	1 cut(s)	226
PfoI	TCCNGGA	1 cut(s)	268
PkrI	GCNGC	1 cut(s)	140
PshBI	ATTAAT	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
RsaI	GTAC	2 cut(s)	25, 323
RsaNI	GTAC	2 cut(s)	24, 322
SaqAI	TTAA	3 cut(s)	47, 144, 380
SatI	GCNGC	1 cut(s)	139
Sau3AI	GATC	2 cut(s)	223, 229
ScaI	AGTACT	1 cut(s)	25
ScrFI	CCNGG	1 cut(s)	270
SetI	ASST	9 cut(s)	73, 134, 143, 206, 249, 258, 282, 323, 349
SfaNI	GCATC	1 cut(s)	98
SfcI	CTRYAG	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
SsiI	CCGC	1 cut(s)	56
SspI	AATATT	1 cut(s)	378
StyD4I	CCNGG	1 cut(s)	268
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	1 cut(s)	232
TatI	WGTACW	1 cut(s)	23
Tru1I	TTAA	3 cut(s)	47, 144, 380
Tru9I	TTAA	3 cut(s)	47, 144, 380
TseI	GCWGC	1 cut(s)	138
TspDTI	ATGAA	1 cut(s)	17
VspI	ATTAAT	1 cut(s)	380
ZrmI	AGTACT	1 cut(s)	25
Zsp2I	ATGCAT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.