RLG00000031002

Belongs to the peptidase S8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006269
Physical Location & Seq
Forward (+)
1305329 .. 1307001
1673 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031002

Sequence Viewer

Length: 840 bp
ATGGCAACTGCAAGAGCCAATATCTTATTGCCTTCGTTTTGTTTCATTGCGTCTAGCTTATGTGAAGTTTACTGGTTTTTCAGCAGAAGATTGAGCAATATACTTGGTTTTGATGGTAGGAGACTCAGTTGCATTCAATGGAGGCTCTCCATCTTCACGCCTCAACCTAAACAGGATTCTCATGATCAACTTCTACAGAGCAATCTTGATACCGGAAGCTACAGCAAGCTTTACAGCTTTAAACACATTGCAAACGGCTTTGCTGTCCGTACAACTCCTTCTCAGGTTGAAAAGCTCAAATATGCTCCAGGAGTAAAGCTGGTTGAGAGAGATAGAGGAGCAAAGTTGATGACAACGTACACTCCTCGCCTCCTTGAGTTACCTGAAGGAGTATGGACACAAGAAAGAGGCCAATGTAATGCTGGTGAAGGAATTGTGATCGGTTTTACTGGTCCTCTATTCCCAGCAACTTCATGCAATGATAAAATTGTTTCAGCCAAGTTTTTCTCAGCTGGGGCTCGAGCCATTGCTACTCTCAACACTTCGGTGGATTTTCTTTCACCCTTTGACGCAGATGGACATGGCATTGCTACTGGAAATGCTGGAGTTCCTGTGGTTGTGAATTGCTTCTGTTATGGACAAGCTAGTGGAATGGCTCCACGTGCGCGGATAAAAAAAGCAAATTCTGTCATGGACAAGCTAGAGATATGCAGTAGCCTCTATAGGTTTTCAAAAAGCCACATGACACATCCACAAAAGCATTCCTGGTATGCTTCCTTCGAGAAGATCGATGGGTATGTTCTGTTCCACTTCTTTAGTTCCTCTAGACATGAGCGCTGA

Protein Analysis

280

Amino Acids

31.06

Weight (kDa)

9.35

Isoelectric Point (pI)

33.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I9 PF05922 58 - 116 2.3e-11 Peptidase inhibitor I9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 667
AciI CCGC 1 cut(s) 667
AcsI RAATTY 1 cut(s) 682
AcuI CTGAAG 1 cut(s) 405
AcvI CACGTG 1 cut(s) 662
AfaI GTAC 2 cut(s) 271, 359
AfeI AGCGCT 1 cut(s) 836
AgsI TTSAA 3 cut(s) 137, 290, 732
AjnI CCWGG 2 cut(s) 307, 764
AleI CACNNNNGTG 1 cut(s) 545
AluBI AGCT 9 cut(s) 57, 219, 229, 237, 295, 319, 512, 644, 700
AluI AGCT 9 cut(s) 57, 219, 229, 237, 295, 319, 512, 644, 700
Alw26I GTCTC 1 cut(s) 115
Ama87I CYCGRG 1 cut(s) 519
Aor51HI AGCGCT 1 cut(s) 836
AoxI GGCC 1 cut(s) 409
ApoI RAATTY 1 cut(s) 682
Asp700I GAANNNNTTC 1 cut(s) 626
AspLEI GCGC 2 cut(s) 667, 837
AspS9I GGNCC 1 cut(s) 452
AsuHPI GGTGA 2 cut(s) 437, 552
AvaI CYCGRG 1 cut(s) 519
AvaII GGWCC 1 cut(s) 452
BanII GRGCYC 1 cut(s) 520
BarI GAAGNNNNNNTAC 4 cut(s) 262, 294, 761, 793
BbrPI CACGTG 1 cut(s) 662
BccI CCATC 4 cut(s) 107, 158, 569, 785
BceAI ACGGC 1 cut(s) 271
BciT130I CCWGG 2 cut(s) 309, 766
BclI TGATCA 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 4 cut(s) 54, 645, 701, 825
BfmI CTRYAG 3 cut(s) 194, 220, 721
BfoI RGCGCY 1 cut(s) 838
Bme1390I CCNGG 2 cut(s) 309, 766
Bme18I GGWCC 1 cut(s) 452
BmeT110I CYCGRG 1 cut(s) 519
BmgT120I GGNCC 1 cut(s) 452
BmiI GGNNCC 1 cut(s) 657
BmrFI CCNGG 2 cut(s) 309, 766
BpmI CTGGAG 2 cut(s) 291, 624
BpuEI CTTGAG 1 cut(s) 395
Bsa29I ATCGAT 1 cut(s) 789
BsaAI YACGTR 1 cut(s) 662
BsaWI WCCGGW 1 cut(s) 212
BsaXI ACNNNNNCTCC 6 cut(s) 112, 142, 346, 376, 597, 627
Bse1I ACTGG 3 cut(s) 77, 454, 598
Bse3DI GCAATG 5 cut(s) 45, 246, 484, 525, 585
BseBI CCWGG 2 cut(s) 309, 766
BseCI ATCGAT 1 cut(s) 789
BseGI GGATG 1 cut(s) 748
BseMI GCAATG 5 cut(s) 45, 246, 484, 525, 585
BseMII CTCAG 3 cut(s) 139, 296, 522
BseNI ACTGG 3 cut(s) 77, 454, 598
BseRI GAGGAG 2 cut(s) 351, 354
BseYI CCCAGC 2 cut(s) 463, 512
Bsh1236I CGCG 1 cut(s) 667
BshFI GGCC 1 cut(s) 411
BshVI ATCGAT 1 cut(s) 789
BsiHKCI CYCGRG 1 cut(s) 519
BsiSI CCGG 1 cut(s) 213
BsmAI GTCTC 1 cut(s) 115
BsmI GAATGC 2 cut(s) 132, 760
BsnI GGCC 1 cut(s) 411
BsoBI CYCGRG 1 cut(s) 519
Bsp1286I GDGCHC 1 cut(s) 520
Bsp143I GATC 3 cut(s) 184, 438, 786
BspACI CCGC 1 cut(s) 667
BspANI GGCC 1 cut(s) 411
BspCNI CTCAG 3 cut(s) 138, 295, 521
BspDI ATCGAT 1 cut(s) 789
BspFNI CGCG 1 cut(s) 667
BspHI TCATGA 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 657
BsrDI GCAATG 5 cut(s) 45, 246, 484, 525, 585
BsrI ACTGG 3 cut(s) 77, 454, 598
BssMI GATC 3 cut(s) 184, 438, 786
Bst2UI CCWGG 2 cut(s) 309, 766
BstBAI YACGTR 1 cut(s) 662
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 3 cut(s) 125, 282, 508
BstF5I GGATG 1 cut(s) 748
BstFNI CGCG 1 cut(s) 667
BstH2I RGCGCY 1 cut(s) 838
BstHHI GCGC 2 cut(s) 667, 837
BstKTI GATC 3 cut(s) 187, 441, 789
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 3 cut(s) 184, 438, 786
BstMWI GCNNNNNNNGC 1 cut(s) 662
BstNI CCWGG 2 cut(s) 309, 766
BstSCI CCNGG 2 cut(s) 307, 764
BstSFI CTRYAG 3 cut(s) 194, 220, 721
BstUI CGCG 1 cut(s) 667
Bsu15I ATCGAT 1 cut(s) 789
BsuRI GGCC 1 cut(s) 411
BsuTUI ATCGAT 1 cut(s) 789
BtsCI GGATG 1 cut(s) 748
Cac8I GCNNGC 1 cut(s) 227
CciI TCATGA 1 cut(s) 181
CfoI GCGC 2 cut(s) 667, 837
Cfr13I GGNCC 1 cut(s) 452
ClaI ATCGAT 1 cut(s) 789
CseI GACGC 2 cut(s) 39, 578
Csp6I GTAC 2 cut(s) 270, 358
CviAII CATG 6 cut(s) 182, 474, 581, 691, 742, 830
CviQI GTAC 2 cut(s) 270, 358
DdeI CTNAG 3 cut(s) 125, 282, 508
DpnI GATC 3 cut(s) 186, 440, 788
DpnII GATC 3 cut(s) 184, 438, 786
DraI TTTAAA 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 520
Eco47I GGWCC 1 cut(s) 452
Eco47III AGCGCT 1 cut(s) 836
Eco57I CTGAAG 1 cut(s) 405
Eco72I CACGTG 1 cut(s) 662
Eco88I CYCGRG 1 cut(s) 519
EcoRII CCWGG 2 cut(s) 307, 764
EcoT38I GRGCYC 1 cut(s) 520
FaeI CATG 6 cut(s) 185, 477, 584, 694, 745, 833
FatI CATG 6 cut(s) 181, 473, 580, 690, 741, 829
FbaI TGATCA 1 cut(s) 184
FokI GGATG 1 cut(s) 735
FriOI GRGCYC 1 cut(s) 520
FspBI CTAG 4 cut(s) 54, 645, 701, 825
GlaI GCGC 2 cut(s) 666, 836
GsaI CCCAGC 2 cut(s) 467, 516
GsuI CTGGAG 2 cut(s) 291, 624
HaeII RGCGCY 1 cut(s) 838
HaeIII GGCC 1 cut(s) 411
HapII CCGG 1 cut(s) 213
HgaI GACGC 2 cut(s) 39, 578
HhaI GCGC 2 cut(s) 667, 837
Hin1II CATG 6 cut(s) 185, 477, 584, 694, 745, 833
Hin6I GCGC 2 cut(s) 665, 835
HinP1I GCGC 2 cut(s) 665, 835
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 2 cut(s) 123, 176
HpaII CCGG 1 cut(s) 213
HphI GGTGA 2 cut(s) 437, 552
Hpy166II GTNNAC 2 cut(s) 70, 360
Hpy188III TCNNGA 4 cut(s) 182, 206, 781, 825
Hpy8I GTNNAC 2 cut(s) 70, 360
HpyAV CCTTC 5 cut(s) 42, 288, 380, 422, 787
HpyCH4IV ACGT 2 cut(s) 356, 661
HpyCH4V TGCA 5 cut(s) 11, 132, 251, 477, 711
HpyF10VI GCNNNNNNNGC 1 cut(s) 662
HpyF3I CTNAG 3 cut(s) 125, 282, 508
HpySE526I ACGT 2 cut(s) 356, 661
Hsp92II CATG 6 cut(s) 185, 477, 584, 694, 745, 833
HspAI GCGC 2 cut(s) 665, 835
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 3 cut(s) 184, 438, 786
LmnI GCTCC 3 cut(s) 310, 338, 661
MaeI CTAG 4 cut(s) 54, 645, 701, 825
MaeII ACGT 2 cut(s) 356, 661
MaeIII GTNAC 1 cut(s) 378
MalI GATC 3 cut(s) 186, 440, 788
MboI GATC 3 cut(s) 184, 438, 786
MboII GAAGA 3 cut(s) 99, 145, 796
MhlI GDGCHC 1 cut(s) 520
MluCI AATT 4 cut(s) 432, 486, 622, 682
MlyI GAGTC 1 cut(s) 117
MnlI CCTC 9 cut(s) 135, 171, 329, 375, 380, 401, 465, 728, 832
MroXI GAANNNNTTC 1 cut(s) 626
MseI TTAA 1 cut(s) 240
MslI CAYNNNNRTG 1 cut(s) 545
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 2 cut(s) 309, 766
Mva1269I GAATGC 2 cut(s) 132, 760
MvaI CCWGG 2 cut(s) 309, 766
MvnI CGCG 1 cut(s) 667
MwoI GCNNNNNNNGC 1 cut(s) 662
NdeII GATC 3 cut(s) 184, 438, 786
NlaIII CATG 6 cut(s) 185, 477, 584, 694, 745, 833
NlaIV GGNNCC 1 cut(s) 657
OliI CACNNNNGTG 1 cut(s) 545
PaeR7I CTCGAG 1 cut(s) 519
PagI TCATGA 1 cut(s) 181
PcsI WCGNNNNNNNCGW 1 cut(s) 786
PctI GAATGC 2 cut(s) 132, 760
PdmI GAANNNNTTC 1 cut(s) 626
PfeI GAWTC 1 cut(s) 176
PfoI TCCNGGA 1 cut(s) 307
PleI GAGTC 1 cut(s) 117
PmaCI CACGTG 1 cut(s) 662
PmlI CACGTG 1 cut(s) 662
PpsI GAGTC 1 cut(s) 117
Ppu21I YACGTR 1 cut(s) 662
Psp6I CCWGG 2 cut(s) 307, 764
PspCI CACGTG 1 cut(s) 662
PspFI CCCAGC 2 cut(s) 463, 512
PspGI CCWGG 2 cut(s) 307, 764
PspN4I GGNNCC 1 cut(s) 657
PspPI GGNCC 1 cut(s) 452
PspXI VCTCGAGB 1 cut(s) 519
PsrI GAACNNNNNNTAC 2 cut(s) 788, 820
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 2 cut(s) 271, 359
RsaNI GTAC 2 cut(s) 270, 358
RseI CAYNNNNRTG 1 cut(s) 545
SaqAI TTAA 1 cut(s) 240
Sau3AI GATC 3 cut(s) 184, 438, 786
Sau96I GGNCC 1 cut(s) 452
SchI GAGTC 1 cut(s) 117
ScrFI CCNGG 2 cut(s) 309, 766
SduI GDGCHC 1 cut(s) 520
SfcI CTRYAG 3 cut(s) 194, 220, 721
Sfr274I CTCGAG 1 cut(s) 519
SinI GGWCC 1 cut(s) 452
SlaI CTCGAG 1 cut(s) 519
SmiMI CAYNNNNRTG 1 cut(s) 545
SmlI CTYRAG 2 cut(s) 374, 519
SmoI CTYRAG 2 cut(s) 374, 519
Sse9I AATT 4 cut(s) 432, 486, 622, 682
SsiI CCGC 1 cut(s) 667
SspMI CTAG 4 cut(s) 54, 645, 701, 825
StyD4I CCNGG 2 cut(s) 307, 764
TaiI ACGT 2 cut(s) 359, 664
TaqI TCGA 3 cut(s) 520, 780, 789
TasI AATT 4 cut(s) 432, 486, 622, 682
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TspDTI ATGAA 2 cut(s) 34, 462
TspGWI ACGGA 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 452
XapI RAATTY 1 cut(s) 682
XbaI TCTAGA 1 cut(s) 824
XcmI CCANNNNNNNNNTGG 1 cut(s) 419
XhoI CTCGAG 1 cut(s) 519
XmnI GAANNNNTTC 1 cut(s) 626
XspI CTAG 4 cut(s) 54, 645, 701, 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.