Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006269

Physical Location & Seq

Genomic Coordinates Forward (+)

1203681 .. 1204654

Gene Structure 974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG017900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTTTGATGTGTTCATGCTGTATGCTCGACGAGTTGGGGTCTTCGTGGTGCAAGCAGCAGGTAATCGAGGGCCAGACCCTTCAACTGTAGTGTCTTACAGCCCTTGGGCAGTAGGTGTAGCTTCTTCCGGCACAGATAGAATTTATCCTTCTTCTATTGTTCTTGGAAATGGAGCAAGAATTGAGGTGTGGGATTATCAGGATGCAATTAATCGAATTGGGTCATTCCCAAGAACCCCACCCTATGTTGAAGAGTGCCAATTTTCACAAGCATTGGATCCTAGGTTAGTTATAGGTAGTATTGTCATCTGCACATTCTCGGAGGGATTCTATAACAGGACATCCACCCTTAATGCCATCATCAACACGGCAAGAGCTCTCGGATTTATGGGTTTTGTTCTTGTTGCAAGTCCAGCCTATGGTGACTTCATTGCAGAGCCTGTTCCTTTTGCTGTTTCTGGCATTTTGGTCCCAAATGTAACCAATTCCCAGGTTATATTACAATACTATGAACAACAAACATTCAAGGATGAGAGAGGATTTCCTACAAGACTTGCAGCGAGAGCATCAATCGGAGAAGGAAGAGCTGCTTCTTTCACGGGCCAAGCACCTATTGTTAGCAGATTCTCTTCGAGAGGACCAGATTTCATTGACAGAGACAGGAAGCCTGCTGATGTACTAAAGCCTGATATTCTTGCCCCGGGGCACCAAATCTGGGGAGCTTGGAGCCCCATTAGTGCCTTAGAACCCTCATTAGTGGGTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0032501 GO:0032502 GO:0042335 GO:0043170 GO:0044238 GO:0048856 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

255

Amino Acids

27.7

Weight (kDa)

5.54

Isoelectric Point (pI)

36.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62340
fragaria_vesca	FvH4_3g01420
malus_domestica	MD05G1352200.v1.1 MD10G1326200.v1.1
prunus_persica	Prupe.4G015500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0002151 RchiOBHm_Chr5g0002191
rosa_laevigata	RLG00000031001 RLG00000031002 RLG00000031007
rosa_multiflora	Rmu_co8154878.1_g000001 Rmu_sc0001492.1_g000001 Rmu_sc0007900.1_g000001 Rmu_sc0013155.1_g000003 Rmu_ssc0000001.1_g000005
rosa_roxburghii	Rroxscaffold_1G00073760
rosa_rugosa	Rorug04G0394700
rosa_samantha	Rh5AG016500 Rh5AG016600 Rh5AG017100 Rh5BG020000 Rh5CG017800 Rh5CG017900 Rh5CG018800 Rh5DG018000
rosa_wichuraiana	Rw2G029690 Rw5G001610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	705
AccB7I	CCANNNNNTGG	1 cut(s)	419
AclWI	GGATC	2 cut(s)	272, 285
AcsI	RAATTY	1 cut(s)	141
AfaI	GTAC	1 cut(s)	678
AfiI	CCNNNNNNNGG	2 cut(s)	419, 715
AgsI	TTSAA	3 cut(s)	84, 251, 526
AjnI	CCWGG	1 cut(s)	489
AluBI	AGCT	4 cut(s)	122, 377, 587, 722
AluI	AGCT	4 cut(s)	122, 377, 587, 722
Alw21I	GWGCWC	1 cut(s)	379
Alw26I	GTCTC	1 cut(s)	651
AlwI	GGATC	2 cut(s)	272, 285
AlwNI	CAGNNNCTG	1 cut(s)	440
Ama87I	CYCGRG	1 cut(s)	700
AoxI	GGCC	2 cut(s)	71, 601
ApeKI	GCWGC	3 cut(s)	56, 557, 587
ApoI	RAATTY	1 cut(s)	141
AseI	ATTAAT	1 cut(s)	210
AspA2I	CCTAGG	1 cut(s)	281
AspS9I	GGNCC	4 cut(s)	71, 469, 601, 638
AsuC2I	CCSGG	2 cut(s)	701, 702
AsuHPI	GGTGA	1 cut(s)	434
AvaI	CYCGRG	1 cut(s)	700
AvaII	GGWCC	2 cut(s)	469, 638
AvrII	CCTAGG	1 cut(s)	281
BaeGI	GKGCMC	1 cut(s)	708
BamHI	GGATCC	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	705
BanII	GRGCYC	2 cut(s)	379, 731
BbsI	GAAGAC	1 cut(s)	34
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	3 cut(s)	68, 569, 574
BccI	CCATC	1 cut(s)	365
BceAI	ACGGC	1 cut(s)	384
BciT130I	CCWGG	1 cut(s)	491
BcnI	CCSGG	2 cut(s)	701, 702
BcoDI	GTCTC	1 cut(s)	651
BfaI	CTAG	1 cut(s)	282
BfmI	CTRYAG	1 cut(s)	87
BfuAI	ACCTGC	1 cut(s)	50
BisI	GCNGC	3 cut(s)	57, 558, 588
BlnI	CCTAGG	1 cut(s)	281
BlsI	GCNGC	3 cut(s)	58, 559, 589
Bme1390I	CCNGG	3 cut(s)	491, 701, 702
Bme18I	GGWCC	2 cut(s)	469, 638
BmeT110I	CYCGRG	1 cut(s)	700
BmgT120I	GGNCC	4 cut(s)	71, 469, 601, 638
BmiI	GGNNCC	4 cut(s)	279, 471, 707, 728
BmrFI	CCNGG	3 cut(s)	491, 701, 702
BmsI	GCATC	2 cut(s)	193, 575
BpiI	GAAGAC	1 cut(s)	34
BpuMI	CCSGG	2 cut(s)	701, 702
BsaJI	CCNNGG	6 cut(s)	104, 281, 489, 699, 700, 701
Bsc4I	CCNNNNNNNGG	2 cut(s)	419, 715
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	491
BseDI	CCNNGG	6 cut(s)	104, 281, 489, 699, 700, 701
BseGI	GGATG	3 cut(s)	208, 341, 535
BseLI	CCNNNNNNNGG	2 cut(s)	419, 715
BseMI	GCAATG	1 cut(s)	429
BseSI	GKGCMC	1 cut(s)	708
BseXI	GCAGC	3 cut(s)	68, 569, 574
BsgI	GTGCAG	1 cut(s)	295
BshFI	GGCC	2 cut(s)	73, 603
BshNI	GGYRCC	1 cut(s)	705
BsiHKAI	GWGCWC	1 cut(s)	379
BsiHKCI	CYCGRG	1 cut(s)	700
BsiSI	CCGG	2 cut(s)	129, 701
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	2 cut(s)	419, 715
BsmAI	GTCTC	1 cut(s)	651
BsmFI	GGGAC	1 cut(s)	455
BsnI	GGCC	2 cut(s)	73, 603
BsoBI	CYCGRG	1 cut(s)	700
Bsp1286I	GDGCHC	3 cut(s)	379, 708, 731
Bsp143I	GATC	1 cut(s)	277
BspANI	GGCC	2 cut(s)	73, 603
BspLI	GGNNCC	4 cut(s)	279, 471, 707, 728
BspMI	ACCTGC	1 cut(s)	50
BspPI	GGATC	2 cut(s)	272, 285
BspQI	GCTCTTC	1 cut(s)	577
BspT107I	GGYRCC	1 cut(s)	705
BsrDI	GCAATG	1 cut(s)	429
BssECI	CCNNGG	6 cut(s)	104, 281, 489, 699, 700, 701
BssMI	GATC	1 cut(s)	277
BssT1I	CCWWGG	2 cut(s)	104, 281
Bst2UI	CCWGG	1 cut(s)	491
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	3 cut(s)	246, 577, 634
BstC8I	GCNNGC	2 cut(s)	54, 669
BstDEI	CTNAG	1 cut(s)	742
BstF5I	GGATG	3 cut(s)	208, 341, 535
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	1 cut(s)	651
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	2 cut(s)	413, 563
BstNI	CCWGG	1 cut(s)	491
BstSCI	CCNGG	3 cut(s)	489, 699, 700
BstSFI	CTRYAG	1 cut(s)	87
BstSLI	GKGCMC	1 cut(s)	708
BstV1I	GCAGC	3 cut(s)	68, 569, 574
BstV2I	GAAGAC	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
BsuRI	GGCC	2 cut(s)	73, 603
BtsCI	GGATG	3 cut(s)	208, 341, 535
BveI	ACCTGC	1 cut(s)	50
Cac8I	GCNNGC	2 cut(s)	54, 669
CaiI	CAGNNNCTG	1 cut(s)	440
Cfr13I	GGNCC	4 cut(s)	71, 469, 601, 638
Cfr9I	CCCGGG	1 cut(s)	700
Csp6I	GTAC	1 cut(s)	677
CviAII	CATG	1 cut(s)	16
CviQI	GTAC	1 cut(s)	677
DdeI	CTNAG	1 cut(s)	742
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
Eam1104I	CTCTTC	3 cut(s)	246, 577, 634
EarI	CTCTTC	3 cut(s)	246, 577, 634
Ecl136II	GAGCTC	1 cut(s)	377
Eco130I	CCWWGG	2 cut(s)	104, 281
Eco24I	GRGCYC	2 cut(s)	379, 731
Eco47I	GGWCC	2 cut(s)	469, 638
Eco53kI	GAGCTC	1 cut(s)	377
Eco88I	CYCGRG	1 cut(s)	700
EcoICRI	GAGCTC	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	489
EcoT14I	CCWWGG	2 cut(s)	104, 281
EcoT38I	GRGCYC	2 cut(s)	379, 731
ErhI	CCWWGG	2 cut(s)	104, 281
FaeI	CATG	1 cut(s)	19
FaiI	YATR	9 cut(s)	17, 24, 246, 293, 333, 389, 420, 497, 510
FalI	AAGNNNNNCTT	2 cut(s)	574, 606
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	1 cut(s)	15
Fnu4HI	GCNGC	3 cut(s)	57, 558, 588
FokI	GGATG	3 cut(s)	215, 328, 542
FriOI	GRGCYC	2 cut(s)	379, 731
Fsp4HI	GCNGC	3 cut(s)	57, 558, 588
FspBI	CTAG	1 cut(s)	282
GluI	GCNGC	3 cut(s)	57, 558, 588
HaeIII	GGCC	2 cut(s)	73, 603
HapII	CCGG	2 cut(s)	129, 701
Hin1II	CATG	1 cut(s)	19
HinfI	GANTC	2 cut(s)	327, 624
HpaII	CCGG	2 cut(s)	129, 701
HphI	GGTGA	1 cut(s)	434
Hpy188I	TCNGA	3 cut(s)	322, 383, 575
Hpy188III	TCNNGA	2 cut(s)	200, 633
Hpy99I	CGWCG	1 cut(s)	33
HpyAV	CCTTC	3 cut(s)	90, 159, 572
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	6 cut(s)	52, 206, 312, 407, 434, 557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	413, 563
HpyF3I	CTNAG	1 cut(s)	742
Hsp92II	CATG	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	277
LguI	GCTCTTC	1 cut(s)	577
LmnI	GCTCC	3 cut(s)	173, 719, 726
Lsp1109I	GCAGC	3 cut(s)	68, 569, 574
LweI	GCATC	2 cut(s)	193, 575
MaeI	CTAG	1 cut(s)	282
MaeIII	GTNAC	2 cut(s)	422, 478
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	6 cut(s)	34, 117, 144, 263, 594, 621
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	3 cut(s)	379, 708, 731
MluCI	AATT	6 cut(s)	141, 180, 207, 216, 260, 484
MnlI	CCTC	6 cut(s)	62, 178, 316, 530, 629, 760
MseI	TTAA	2 cut(s)	210, 351
MspI	CCGG	2 cut(s)	129, 701
MspR9I	CCNGG	3 cut(s)	491, 701, 702
MvaI	CCWGG	1 cut(s)	491
MwoI	GCNNNNNNNGC	2 cut(s)	413, 563
NciI	CCSGG	2 cut(s)	701, 702
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	1 cut(s)	19
NlaIV	GGNNCC	4 cut(s)	279, 471, 707, 728
NmuCI	GTSAC	1 cut(s)	422
PciSI	GCTCTTC	1 cut(s)	577
PfeI	GAWTC	2 cut(s)	327, 624
PflMI	CCANNNNNTGG	1 cut(s)	419
PkrI	GCNGC	3 cut(s)	58, 559, 589
PshBI	ATTAAT	1 cut(s)	210
Psp124BI	GAGCTC	1 cut(s)	379
Psp6I	CCWGG	1 cut(s)	489
PspGI	CCWGG	1 cut(s)	489
PspN4I	GGNNCC	4 cut(s)	279, 471, 707, 728
PspPI	GGNCC	4 cut(s)	71, 469, 601, 638
PstNI	CAGNNNCTG	1 cut(s)	440
PsuI	RGATCY	1 cut(s)	277
RsaI	GTAC	1 cut(s)	678
RsaNI	GTAC	1 cut(s)	677
SacI	GAGCTC	1 cut(s)	379
SapI	GCTCTTC	1 cut(s)	577
SaqAI	TTAA	2 cut(s)	210, 351
SatI	GCNGC	3 cut(s)	57, 558, 588
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	4 cut(s)	71, 469, 601, 638
ScrFI	CCNGG	3 cut(s)	491, 701, 702
SduI	GDGCHC	3 cut(s)	379, 708, 731
SfaNI	GCATC	2 cut(s)	193, 575
SfcI	CTRYAG	1 cut(s)	87
SinI	GGWCC	2 cut(s)	469, 638
SmaI	CCCGGG	1 cut(s)	702
Sse9I	AATT	6 cut(s)	141, 180, 207, 216, 260, 484
SspMI	CTAG	1 cut(s)	282
SstI	GAGCTC	1 cut(s)	379
StyD4I	CCNGG	3 cut(s)	489, 699, 700
StyI	CCWWGG	2 cut(s)	104, 281
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	4 cut(s)	28, 67, 214, 632
TasI	AATT	6 cut(s)	141, 180, 207, 216, 260, 484
TatI	WGTACW	1 cut(s)	676
TfiI	GAWTC	2 cut(s)	327, 624
Tru1I	TTAA	2 cut(s)	210, 351
Tru9I	TTAA	2 cut(s)	210, 351
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	3 cut(s)	56, 557, 587
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	4 cut(s)	4, 418, 525, 637
TspMI	CCCGGG	1 cut(s)	700
Van91I	CCANNNNNTGG	1 cut(s)	419
VpaK11BI	GGWCC	2 cut(s)	469, 638
VspI	ATTAAT	1 cut(s)	210
XapI	RAATTY	1 cut(s)	141
XmaI	CCCGGG	1 cut(s)	700
XmaJI	CCTAGG	1 cut(s)	281
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.