Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007554

Physical Location & Seq

Genomic Coordinates Forward (+)

4286973 .. 4288203

Gene Structure 1231 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28803

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCCAGAGCTCACAACACTTGGTGATCTGTACCATGAAGGGAAAGAGTTTGAGGAAATATTAAGAGCGATGAAGCCAGAATTGCTGTCATATGAACTGAAAGAAGCTCTTCTTCTCTTTAGCTCTGACGTGTTTGGTGTTCAGCAACAAGATCAGCCTAATTATGAGGAAGAGCCAGTTGATAAGACAAAGCATTTGGGTGATTTGGAGAGAGAGGAAGAAGAGGAAGAACCGATGGAGGGCAAAGATCTAGAAGATGGTATTGAATCTGTAGATAGCCTTTCAAGTACTCCCACTGGCAATGAGAAACCTGATGTCATTGACCTTCACAAGCAGCAGAGAAAGGAGCCTGAAAGACCTTTATACCAAGTAAGTACGATAGCAGACACTTTCTTTAACGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

134

Amino Acids

15.46

Weight (kDa)

4.25

Isoelectric Point (pI)

58.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0006921 RchiOBHm_Chr5g0006931 RchiOBHm_Chr5g0007041 RchiOBHm_Chr5g0007191 RchiOBHm_Chr5g0007351
rosa_laevigata	RLG00000031441 RLG00000031449 RLG00000031452
rosa_roxburghii	Rroxscaffold_1G00069130
rosa_rugosa	Rorug04G0425600 Rorug04G0425900 Rorug04G0426200 Rorug04G0426300 Rorug04G0426400
rosa_samantha	Rh5AG053200 Rh5AG053500 Rh5AG053800 Rh5AG054700 Rh5CG060800 Rh5CG061100 Rh5CG061200 Rh5CG061400
rosa_wichuraiana	Rw5G005120 Rw5G005160 Rw5G005530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AdeI	CACNNNGTG	1 cut(s)	23
AfaI	GTAC	3 cut(s)	32, 289, 376
AfiI	CCNNNNNNNGG	1 cut(s)	239
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	2 cut(s)	266, 285
AjiI	CACGTC	1 cut(s)	130
AluBI	AGCT	3 cut(s)	10, 107, 123
AluI	AGCT	3 cut(s)	10, 107, 123
Alw21I	GWGCWC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	334
ArsI	GACNNNNNNTTYG	2 cut(s)	178, 210
Asp700I	GAANNNNTTC	1 cut(s)	108
AsuHPI	GGTGA	2 cut(s)	35, 212
BanII	GRGCYC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	2 cut(s)	229, 251
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	270
BglII	AGATCT	1 cut(s)	247
BisI	GCNGC	1 cut(s)	335
BlsI	GCNGC	1 cut(s)	336
BmcAI	AGTACT	1 cut(s)	289
BmgBI	CACGTC	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	2 cut(s)	176, 301
Bse3DI	GCAATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMI	GCAATG	1 cut(s)	307
BseNI	ACTGG	2 cut(s)	176, 301
BseXI	GCAGC	1 cut(s)	346
BsiHKAI	GWGCWC	1 cut(s)	12
BslI	CCNNNNNNNGG	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	3 cut(s)	25, 151, 247
BspLI	GGNNCC	1 cut(s)	348
BspQI	GCTCTTC	2 cut(s)	114, 165
BsrDI	GCAATG	1 cut(s)	307
BsrI	ACTGG	2 cut(s)	176, 301
BssMI	GATC	3 cut(s)	25, 151, 247
Bst6I	CTCTTC	3 cut(s)	114, 165, 216
BstKTI	GATC	3 cut(s)	28, 154, 250
BstMBI	GATC	3 cut(s)	25, 151, 247
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	346
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BtgZI	GCGATG	1 cut(s)	83
BtrI	CACGTC	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	294
Csp6I	GTAC	3 cut(s)	31, 288, 375
CviAII	CATG	1 cut(s)	35
CviJI	RGCY	8 cut(s)	10, 76, 107, 123, 157, 175, 279, 349
CviKI_1	RGCY	8 cut(s)	10, 76, 107, 123, 157, 175, 279, 349
CviQI	GTAC	3 cut(s)	31, 288, 375
DpnI	GATC	3 cut(s)	27, 153, 249
DpnII	GATC	3 cut(s)	25, 151, 247
DraIII	CACNNNGTG	1 cut(s)	23
Eam1104I	CTCTTC	3 cut(s)	114, 165, 216
EarI	CTCTTC	3 cut(s)	114, 165, 216
Ecl136II	GAGCTC	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	12
Eco53kI	GAGCTC	1 cut(s)	10
EcoICRI	GAGCTC	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	12
FaeI	CATG	1 cut(s)	38
FaiI	YATR	5 cut(s)	36, 91, 93, 165, 364
FalI	AAGNNNNNCTT	4 cut(s)	93, 125, 96, 128
FatI	CATG	1 cut(s)	34
FauNDI	CATATG	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	335
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	1 cut(s)	335
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	1 cut(s)	335
Hin1II	CATG	1 cut(s)	38
HinfI	GANTC	1 cut(s)	266
HphI	GGTGA	2 cut(s)	35, 212
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	1 cut(s)	251
HpyAV	CCTTC	2 cut(s)	32, 335
HpyCH4IV	ACGT	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	38
Kzo9I	GATC	3 cut(s)	25, 151, 247
LguI	GCTCTTC	2 cut(s)	114, 165
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	6 cut(s)	18, 90, 189, 282, 324, 363
Lsp1109I	GCAGC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	129
MalI	GATC	3 cut(s)	27, 153, 249
MboI	GATC	3 cut(s)	25, 151, 247
MboII	GAAGA	7 cut(s)	101, 104, 182, 230, 233, 239, 266
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	2 cut(s)	80, 160
MnlI	CCTC	5 cut(s)	46, 160, 208, 217, 232
MroXI	GAANNNNTTC	1 cut(s)	108
MseI	TTAA	2 cut(s)	62, 396
MslI	CAYNNNNRTG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	82
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	3 cut(s)	25, 151, 247
NlaIII	CATG	1 cut(s)	38
NlaIV	GGNNCC	1 cut(s)	348
PciSI	GCTCTTC	2 cut(s)	114, 165
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	336
Psp124BI	GAGCTC	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	348
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	3 cut(s)	32, 289, 376
RsaNI	GTAC	3 cut(s)	31, 288, 375
RseI	CAYNNNNRTG	1 cut(s)	198
SacI	GAGCTC	1 cut(s)	12
SapI	GCTCTTC	2 cut(s)	114, 165
SaqAI	TTAA	2 cut(s)	62, 396
SatI	GCNGC	1 cut(s)	335
Sau3AI	GATC	3 cut(s)	25, 151, 247
ScaI	AGTACT	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	7 cut(s)	12, 109, 125, 132, 313, 327, 361
SfcI	CTRYAG	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	198
Sse9I	AATT	2 cut(s)	80, 160
SspI	AATATT	1 cut(s)	60
SspMI	CTAG	1 cut(s)	251
SstI	GAGCTC	1 cut(s)	12
TaiI	ACGT	1 cut(s)	132
TasI	AATT	2 cut(s)	80, 160
TatI	WGTACW	1 cut(s)	287
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	2 cut(s)	62, 396
Tru9I	TTAA	2 cut(s)	62, 396
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	1 cut(s)	334
TspDTI	ATGAA	3 cut(s)	51, 86, 108
TspRI	CASTG	1 cut(s)	301
XbaI	TCTAGA	1 cut(s)	250
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	1 cut(s)	251
ZrmI	AGTACT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.