Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007554

Physical Location & Seq

Genomic Coordinates Forward (+)

4501580 .. 4503658

Gene Structure 2079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG053200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCCAGAGCTCACAACACTTGGTGATCTGTACCACGAAGGGAAAGAGTTTGAGGAAATATTAAGAGAGATGAAGCCAGAATTGCTGTCATATGAACTGAAAGAAGCTCTTGTTCTCTTTAGCTCTGACGTGTTTGGTGTTCAGCAACAAGATCAGCCTAATTATGAGGAAGAGCCAGTTGATAAGACAAAGCATTTGGGTGATTTGGAGAGAGAGGAAGAAGAGGAAGAACCGATGGAGGGCAAAGATCTAGAAGATGGTATTGAATCTGCAGGTAGCCTTTCAAGACTTCCGCACTTCCTTCTCAGTACTCCCACTGGCAATGAGAAACCTGATGTCATTGACCTTCACAAGCAGCAGAGAAAGGAGCCTGAAAGACCTTTATACCAAAATGAGAAGAAGAGGAAACATAAGATGCCATACATGAGAGATCTGAGTTCTATCAAGTTTTGCAAGAAGCCAAGCAGATTACAGGTGACGGTTACAAGAATAGCGGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

167

Amino Acids

19.47

Weight (kDa)

5.1

Isoelectric Point (pI)

63.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0006921 RchiOBHm_Chr5g0006931 RchiOBHm_Chr5g0007041 RchiOBHm_Chr5g0007191 RchiOBHm_Chr5g0007351
rosa_laevigata	RLG00000031441 RLG00000031449 RLG00000031452
rosa_roxburghii	Rroxscaffold_1G00069130
rosa_rugosa	Rorug04G0425600 Rorug04G0425900 Rorug04G0426200 Rorug04G0426300 Rorug04G0426400
rosa_samantha	Rh5AG053200 Rh5AG053500 Rh5AG053800 Rh5AG054700 Rh5CG060800 Rh5CG061100 Rh5CG061200 Rh5CG061400
rosa_wichuraiana	Rw5G005120 Rw5G005160 Rw5G005530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	263
AciI	CCGC	2 cut(s)	293, 494
AdeI	CACNNNGTG	1 cut(s)	23
AfaI	GTAC	2 cut(s)	32, 310
AfiI	CCNNNNNNNGG	1 cut(s)	239
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	2 cut(s)	266, 285
AjiI	CACGTC	1 cut(s)	130
AluBI	AGCT	3 cut(s)	10, 107, 123
AluI	AGCT	3 cut(s)	10, 107, 123
Alw21I	GWGCWC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	355
ArsI	GACNNNNNNTTYG	2 cut(s)	178, 210
AsuHPI	GGTGA	3 cut(s)	35, 212, 487
BanII	GRGCYC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	2 cut(s)	229, 251
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	270
BfuAI	ACCTGC	1 cut(s)	263
BglII	AGATCT	2 cut(s)	247, 430
BisI	GCNGC	1 cut(s)	356
BlsI	GCNGC	1 cut(s)	357
BmcAI	AGTACT	1 cut(s)	310
BmgBI	CACGTC	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	369
BmsI	GCATC	1 cut(s)	405
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	2 cut(s)	176, 322
Bse3DI	GCAATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMI	GCAATG	1 cut(s)	328
BseMII	CTCAG	2 cut(s)	319, 425
BseNI	ACTGG	2 cut(s)	176, 322
BseXI	GCAGC	1 cut(s)	367
BsiHKAI	GWGCWC	1 cut(s)	12
BslI	CCNNNNNNNGG	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	4 cut(s)	25, 151, 247, 430
BspACI	CCGC	2 cut(s)	293, 494
BspCNI	CTCAG	2 cut(s)	318, 426
BspLI	GGNNCC	1 cut(s)	369
BspMAI	CTGCAG	1 cut(s)	274
BspMI	ACCTGC	1 cut(s)	263
BspQI	GCTCTTC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	328
BsrI	ACTGG	2 cut(s)	176, 322
BssMI	GATC	4 cut(s)	25, 151, 247, 430
Bst4CI	ACNGT	1 cut(s)	481
Bst6I	CTCTTC	3 cut(s)	165, 216, 395
BstDEI	CTNAG	2 cut(s)	305, 434
BstKTI	GATC	4 cut(s)	28, 154, 250, 433
BstMBI	GATC	4 cut(s)	25, 151, 247, 430
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	367
BstX2I	RGATCY	2 cut(s)	247, 430
BstYI	RGATCY	2 cut(s)	247, 430
BtrI	CACGTC	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	315
BveI	ACCTGC	1 cut(s)	263
Csp6I	GTAC	2 cut(s)	31, 309
CviAII	CATG	1 cut(s)	424
CviJI	RGCY	9 cut(s)	10, 76, 107, 123, 157, 175, 279, 370, 460
CviKI_1	RGCY	9 cut(s)	10, 76, 107, 123, 157, 175, 279, 370, 460
CviQI	GTAC	2 cut(s)	31, 309
DdeI	CTNAG	2 cut(s)	305, 434
DpnI	GATC	4 cut(s)	27, 153, 249, 432
DpnII	GATC	4 cut(s)	25, 151, 247, 430
DraIII	CACNNNGTG	1 cut(s)	23
Eam1104I	CTCTTC	3 cut(s)	165, 216, 395
EarI	CTCTTC	3 cut(s)	165, 216, 395
Ecl136II	GAGCTC	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	12
Eco53kI	GAGCTC	1 cut(s)	10
EcoICRI	GAGCTC	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	12
FaeI	CATG	1 cut(s)	427
FaiI	YATR	7 cut(s)	91, 93, 165, 385, 411, 421, 425
FalI	AAGNNNNNCTT	2 cut(s)	93, 125
FatI	CATG	1 cut(s)	423
FauI	CCCGC	1 cut(s)	487
FauNDI	CATATG	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	356
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	1 cut(s)	356
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	1 cut(s)	356
Hin1II	CATG	1 cut(s)	427
HinfI	GANTC	1 cut(s)	266
HphI	GGTGA	3 cut(s)	35, 212, 487
Hpy188I	TCNGA	2 cut(s)	127, 435
Hpy188III	TCNNGA	2 cut(s)	251, 285
HpyAV	CCTTC	3 cut(s)	32, 311, 356
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	2 cut(s)	272, 453
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	2 cut(s)	305, 434
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	427
Kzo9I	GATC	4 cut(s)	25, 151, 247, 430
LguI	GCTCTTC	1 cut(s)	165
LmnI	GCTCC	1 cut(s)	367
LpnPI	CCDG	8 cut(s)	18, 90, 189, 258, 303, 345, 384, 458
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	1 cut(s)	405
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	475, 481
MalI	GATC	4 cut(s)	27, 153, 249, 432
MboI	GATC	4 cut(s)	25, 151, 247, 430
MboII	GAAGA	7 cut(s)	182, 230, 233, 239, 266, 409, 412
MflI	RGATCY	2 cut(s)	247, 430
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	2 cut(s)	80, 160
MnlI	CCTC	6 cut(s)	46, 160, 208, 217, 232, 396
MseI	TTAA	1 cut(s)	62
MslI	CAYNNNNRTG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	82
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	4 cut(s)	25, 151, 247, 430
NlaIII	CATG	1 cut(s)	427
NlaIV	GGNNCC	1 cut(s)	369
NmuCI	GTSAC	1 cut(s)	475
PciSI	GCTCTTC	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	357
Psp124BI	GAGCTC	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	369
PstI	CTGCAG	1 cut(s)	274
PsuI	RGATCY	2 cut(s)	247, 430
RsaI	GTAC	2 cut(s)	32, 310
RsaNI	GTAC	2 cut(s)	31, 309
RseI	CAYNNNNRTG	1 cut(s)	198
SacI	GAGCTC	1 cut(s)	12
SapI	GCTCTTC	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	62
SatI	GCNGC	1 cut(s)	356
Sau3AI	GATC	4 cut(s)	25, 151, 247, 430
ScaI	AGTACT	1 cut(s)	310
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	9 cut(s)	12, 109, 125, 132, 277, 334, 348, 382, 477
SfaNI	GCATC	1 cut(s)	405
SfcI	CTRYAG	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	198
Sse9I	AATT	2 cut(s)	80, 160
SsiI	CCGC	2 cut(s)	293, 494
SspI	AATATT	1 cut(s)	60
SspMI	CTAG	1 cut(s)	251
SstI	GAGCTC	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	481
TaiI	ACGT	1 cut(s)	132
TasI	AATT	2 cut(s)	80, 160
TatI	WGTACW	1 cut(s)	308
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	1 cut(s)	62
Tru9I	TTAA	1 cut(s)	62
TscAI	CASTG	1 cut(s)	322
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	1 cut(s)	355
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	2 cut(s)	86, 108
TspRI	CASTG	1 cut(s)	322
XbaI	TCTAGA	1 cut(s)	250
XspI	CTAG	1 cut(s)	251
ZrmI	AGTACT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.