Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007554

Physical Location & Seq

Genomic Coordinates Forward (+)

5288393 .. 5291363

Gene Structure 2971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031449

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGAATGCTGTTCCGCTGACTCTGTTTCCATTTCTGGTGTGGGATGCAACTGCTTTTCTTTCTGAAATTGTATCGGAATACTGTACTGGTGCCAAGGCATTGGTGCCAGAACAAGAAATTTCTACAGGATTAGGAAATAGGGCATGGGAAGATCACGTCGATGAGGAGAGCAATGTGGCTACTGTGGAGCCTGGACTTGGTAAATGTGGTACCGGAAAACAACCGTTTCAGCTTCCTGATTTCATTGCTGCAACTGGAATTGAGAAAATTAGACAGGCATACATTGAAAAAGAAGATAGTAAGAAGACAAAGCAAGTGCAACGAGAATGTATGCAGCCAAAGATGGGCAAAACAGATATTGATTATCTGGTTCTTCATGATGCCTTTTTCAGGTACCAAACTATGCCAGAGCTCACAACACTTGGTGATCTGTACCATGAAGGGAAAGAGTTTGAGATGAAGCCAGAATTGCTGTCATATGAACTGAAAGAAGCTCTTGGTATGCCAGATGGTGCTCCTCCGCCATGTCTCATTAAATATGCAGAGATATGGTCCCACTCATTATATCCCAATTTGAAAATCCCTGGACTGAATGCTCCCATCCCCACCGGAGCTACCTTTGGTAATCATGTAGGTGGCTGTGGAAAGCCTCTGTTTAAGAAGTTTTTTGAAGAAGAGCCAGTTGATAAGACAAAGCATTGGGGTGATTTGGAGAGAGAGGAAGAAGAGGAAGAACCGATGGAGGGCAAAGATCTAGAAGATGGTGTTGAATCTGCAGATAGCCTTTCAAGTACTCCCACTGGCAATGAGAAACCAGATGTCATTGACCTTCACAAGCAGCAGAGAAAGGAGCCAGAAAGACCTTTATACCAAGTAAGTATGAACAAGCAAGGGGGGAGAAGAAGCTGCGAAGTTAGCGAGAGGATCTCAGTGACATGGTTGCGGAGGTGGTGTGTGCCTCTCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

323

Amino Acids

36.26

Weight (kDa)

4.92

Isoelectric Point (pI)

54.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF382	PF04037	68 - 150	2.2e-29	Domain of unknown function (DUF382)
PSP	PF04046	154 - 199	9.5e-09	PSP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0006921 RchiOBHm_Chr5g0006931 RchiOBHm_Chr5g0007041 RchiOBHm_Chr5g0007191 RchiOBHm_Chr5g0007351
rosa_laevigata	RLG00000031441 RLG00000031449 RLG00000031452
rosa_roxburghii	Rroxscaffold_1G00069130
rosa_rugosa	Rorug04G0425600 Rorug04G0425900 Rorug04G0426200 Rorug04G0426300 Rorug04G0426400
rosa_samantha	Rh5AG053200 Rh5AG053500 Rh5AG053800 Rh5AG054700 Rh5CG060800 Rh5CG061100 Rh5CG061200 Rh5CG061400
rosa_wichuraiana	Rw5G005120 Rw5G005160 Rw5G005530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	209, 393
AccB1I	GGYRCC	4 cut(s)	89, 103, 209, 393
AciI	CCGC	3 cut(s)	14, 521, 943
AclWI	GGATC	1 cut(s)	932
AcsI	RAATTY	1 cut(s)	117
AdeI	CACNNNGTG	1 cut(s)	425
AfaI	GTAC	5 cut(s)	85, 211, 395, 434, 793
AfiI	CCNNNNNNNGG	4 cut(s)	197, 344, 390, 743
AgsI	TTSAA	5 cut(s)	287, 577, 671, 770, 789
AjiI	CACGTC	1 cut(s)	157
AjnI	CCWGG	2 cut(s)	190, 583
AluBI	AGCT	5 cut(s)	232, 412, 494, 614, 906
AluI	AGCT	5 cut(s)	232, 412, 494, 614, 906
Alw21I	GWGCWC	2 cut(s)	414, 517
Alw26I	GTCTC	1 cut(s)	533
AlwI	GGATC	1 cut(s)	932
Ama87I	CYCGRG	1 cut(s)	962
ApeKI	GCWGC	4 cut(s)	248, 334, 838, 906
ApoI	RAATTY	1 cut(s)	117
Asp718I	GGTACC	2 cut(s)	209, 393
AspS9I	GGNCC	1 cut(s)	552
AsuHPI	GGTGA	2 cut(s)	437, 716
AvaI	CYCGRG	1 cut(s)	962
AvaII	GGWCC	1 cut(s)	552
BanI	GGYRCC	4 cut(s)	89, 103, 209, 393
BanII	GRGCYC	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	311
Bbv12I	GWGCWC	2 cut(s)	414, 517
BbvI	GCAGC	4 cut(s)	235, 346, 850, 893
BccI	CCATC	5 cut(s)	337, 503, 608, 733, 755
BciT130I	CCWGG	2 cut(s)	192, 585
BcoDI	GTCTC	1 cut(s)	533
BfaI	CTAG	1 cut(s)	755
BfmI	CTRYAG	2 cut(s)	123, 774
BglII	AGATCT	1 cut(s)	751
BisI	GCNGC	4 cut(s)	249, 335, 839, 907
BlsI	GCNGC	4 cut(s)	250, 336, 840, 908
BmcAI	AGTACT	1 cut(s)	793
Bme1390I	CCNGG	2 cut(s)	192, 585
Bme18I	GGWCC	1 cut(s)	552
BmeT110I	CYCGRG	1 cut(s)	962
BmgBI	CACGTC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	552
BmiI	GGNNCC	7 cut(s)	91, 105, 189, 211, 395, 554, 852
BmrFI	CCNGG	2 cut(s)	192, 585
BmsI	GCATC	2 cut(s)	34, 370
BpiI	GAAGAC	1 cut(s)	311
BplI	GAGNNNNNCTC	2 cut(s)	911, 943
BsaJI	CCNNGG	2 cut(s)	93, 583
BsaWI	WCCGGW	2 cut(s)	212, 608
BsaXI	ACNNNNNCTCC	2 cut(s)	937, 967
Bsc4I	CCNNNNNNNGG	4 cut(s)	197, 344, 390, 743
Bse1I	ACTGG	4 cut(s)	91, 259, 680, 805
Bse3DI	GCAATG	3 cut(s)	178, 243, 811
BseBI	CCWGG	2 cut(s)	192, 585
BseDI	CCNNGG	2 cut(s)	93, 583
BseGI	GGATG	2 cut(s)	49, 600
BseLI	CCNNNNNNNGG	4 cut(s)	197, 344, 390, 743
BseMI	GCAATG	3 cut(s)	178, 243, 811
BseMII	CTCAG	1 cut(s)	942
BseNI	ACTGG	4 cut(s)	91, 259, 680, 805
BseRI	GAGGAG	2 cut(s)	179, 507
BseXI	GCAGC	4 cut(s)	235, 346, 850, 893
BshNI	GGYRCC	4 cut(s)	89, 103, 209, 393
BsiHKAI	GWGCWC	2 cut(s)	414, 517
BsiHKCI	CYCGRG	1 cut(s)	962
BsiSI	CCGG	2 cut(s)	213, 609
BslFI	GGGAC	1 cut(s)	538
BslI	CCNNNNNNNGG	4 cut(s)	197, 344, 390, 743
BsmAI	GTCTC	1 cut(s)	533
BsmFI	GGGAC	1 cut(s)	538
BsmI	GAATGC	2 cut(s)	10, 598
BsoBI	CYCGRG	1 cut(s)	962
Bsp1286I	GDGCHC	2 cut(s)	414, 517
Bsp143I	GATC	4 cut(s)	151, 427, 751, 924
BspACI	CCGC	3 cut(s)	14, 521, 943
BspCNI	CTCAG	1 cut(s)	941
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	7 cut(s)	91, 105, 189, 211, 395, 554, 852
BspMAI	CTGCAG	1 cut(s)	778
BspPI	GGATC	1 cut(s)	932
BspQI	GCTCTTC	1 cut(s)	669
BspT107I	GGYRCC	4 cut(s)	89, 103, 209, 393
BsrDI	GCAATG	3 cut(s)	178, 243, 811
BsrI	ACTGG	4 cut(s)	91, 259, 680, 805
BssECI	CCNNGG	2 cut(s)	93, 583
BssMI	GATC	4 cut(s)	151, 427, 751, 924
BssT1I	CCWWGG	1 cut(s)	93
Bst2UI	CCWGG	2 cut(s)	192, 585
Bst4CI	ACNGT	3 cut(s)	83, 184, 225
Bst6I	CTCTTC	2 cut(s)	669, 720
BstDEI	CTNAG	1 cut(s)	928
BstENI	CCTNNNNNAGG	1 cut(s)	388
BstF5I	GGATG	2 cut(s)	49, 600
BstKTI	GATC	4 cut(s)	154, 430, 754, 927
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	4 cut(s)	151, 427, 751, 924
BstMWI	GCNNNNNNNGC	2 cut(s)	469, 915
BstNI	CCWGG	2 cut(s)	192, 585
BstSCI	CCNGG	2 cut(s)	190, 583
BstSFI	CTRYAG	2 cut(s)	123, 774
BstV1I	GCAGC	4 cut(s)	235, 346, 850, 893
BstV2I	GAAGAC	1 cut(s)	311
BstX2I	RGATCY	2 cut(s)	751, 924
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstYI	RGATCY	2 cut(s)	751, 924
BtrI	CACGTC	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	49, 600
BtsIMutI	CAGTG	2 cut(s)	798, 936
CciI	TCATGA	1 cut(s)	376
Cfr13I	GGNCC	1 cut(s)	552
Csp6I	GTAC	5 cut(s)	84, 210, 394, 433, 792
CviAII	CATG	6 cut(s)	144, 377, 437, 525, 629, 936
CviQI	GTAC	5 cut(s)	84, 210, 394, 433, 792
DdeI	CTNAG	1 cut(s)	928
DpnI	GATC	4 cut(s)	153, 429, 753, 926
DpnII	GATC	4 cut(s)	151, 427, 751, 924
DraIII	CACNNNGTG	1 cut(s)	425
Eam1104I	CTCTTC	2 cut(s)	669, 720
EarI	CTCTTC	2 cut(s)	669, 720
EciI	GGCGGA	1 cut(s)	510
Ecl136II	GAGCTC	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	552
Eco53kI	GAGCTC	1 cut(s)	412
Eco88I	CYCGRG	1 cut(s)	962
EcoICRI	GAGCTC	1 cut(s)	412
EcoNI	CCTNNNNNAGG	1 cut(s)	388
EcoRII	CCWGG	2 cut(s)	190, 583
EcoT14I	CCWWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	6 cut(s)	147, 380, 440, 528, 632, 939
FalI	AAGNNNNNCTT	2 cut(s)	480, 512
FaqI	GGGAC	1 cut(s)	538
FatI	CATG	6 cut(s)	143, 376, 436, 524, 628, 935
FauNDI	CATATG	1 cut(s)	478
Fnu4HI	GCNGC	4 cut(s)	249, 335, 839, 907
FokI	GGATG	2 cut(s)	56, 587
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	4 cut(s)	249, 335, 839, 907
FspBI	CTAG	1 cut(s)	755
GluI	GCNGC	4 cut(s)	249, 335, 839, 907
HapII	CCGG	2 cut(s)	213, 609
Hin1II	CATG	6 cut(s)	147, 380, 440, 528, 632, 939
HinfI	GANTC	2 cut(s)	19, 770
HpaII	CCGG	2 cut(s)	213, 609
HphI	GGTGA	2 cut(s)	437, 716
Hpy188I	TCNGA	2 cut(s)	64, 76
Hpy188III	TCNNGA	3 cut(s)	236, 377, 755
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	434, 839
HpyCH4III	ACNGT	3 cut(s)	83, 184, 225
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	6 cut(s)	47, 251, 319, 334, 542, 776
HpyF10VI	GCNNNNNNNGC	2 cut(s)	469, 915
HpyF3I	CTNAG	1 cut(s)	928
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	6 cut(s)	147, 380, 440, 528, 632, 939
KpnI	GGTACC	2 cut(s)	213, 397
Kzo9I	GATC	4 cut(s)	151, 427, 751, 924
LguI	GCTCTTC	1 cut(s)	669
LmnI	GCTCC	5 cut(s)	187, 520, 601, 611, 850
Lsp1109I	GCAGC	4 cut(s)	235, 346, 850, 893
LweI	GCATC	2 cut(s)	34, 370
MaeI	CTAG	1 cut(s)	755
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	931
MalI	GATC	4 cut(s)	153, 429, 753, 926
MboI	GATC	4 cut(s)	151, 427, 751, 924
MflI	RGATCY	2 cut(s)	751, 924
MhlI	GDGCHC	2 cut(s)	414, 517
MluCI	AATT	6 cut(s)	66, 117, 258, 267, 467, 571
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	9 cut(s)	157, 528, 660, 712, 721, 736, 915, 939, 969
MseI	TTAA	2 cut(s)	534, 657
MslI	CAYNNNNRTG	3 cut(s)	159, 633, 702
MspA1I	CMGCKG	1 cut(s)	16
MspI	CCGG	2 cut(s)	213, 609
MspR9I	CCNGG	2 cut(s)	192, 585
Mva1269I	GAATGC	2 cut(s)	10, 598
MvaI	CCWGG	2 cut(s)	192, 585
MwoI	GCNNNNNNNGC	2 cut(s)	469, 915
NdeI	CATATG	1 cut(s)	478
NdeII	GATC	4 cut(s)	151, 427, 751, 924
NlaIII	CATG	6 cut(s)	147, 380, 440, 528, 632, 939
NlaIV	GGNNCC	7 cut(s)	91, 105, 189, 211, 395, 554, 852
NmuCI	GTSAC	1 cut(s)	931
PagI	TCATGA	1 cut(s)	376
PciSI	GCTCTTC	1 cut(s)	669
PctI	GAATGC	2 cut(s)	10, 598
PfeI	GAWTC	1 cut(s)	770
PkrI	GCNGC	4 cut(s)	250, 336, 840, 908
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp124BI	GAGCTC	1 cut(s)	414
Psp6I	CCWGG	2 cut(s)	190, 583
PspGI	CCWGG	2 cut(s)	190, 583
PspN4I	GGNNCC	7 cut(s)	91, 105, 189, 211, 395, 554, 852
PspPI	GGNCC	1 cut(s)	552
PstI	CTGCAG	1 cut(s)	778
PsuI	RGATCY	2 cut(s)	751, 924
RsaI	GTAC	5 cut(s)	85, 211, 395, 434, 793
RsaNI	GTAC	5 cut(s)	84, 210, 394, 433, 792
RseI	CAYNNNNRTG	3 cut(s)	159, 633, 702
SacI	GAGCTC	1 cut(s)	414
SapI	GCTCTTC	1 cut(s)	669
SaqAI	TTAA	2 cut(s)	534, 657
SatI	GCNGC	4 cut(s)	249, 335, 839, 907
Sau3AI	GATC	4 cut(s)	151, 427, 751, 924
Sau96I	GGNCC	1 cut(s)	552
ScaI	AGTACT	1 cut(s)	793
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	192, 585
SduI	GDGCHC	2 cut(s)	414, 517
SfaNI	GCATC	2 cut(s)	34, 370
SfcI	CTRYAG	2 cut(s)	123, 774
SinI	GGWCC	1 cut(s)	552
SmiMI	CAYNNNNRTG	3 cut(s)	159, 633, 702
Sse9I	AATT	6 cut(s)	66, 117, 258, 267, 467, 571
SsiI	CCGC	3 cut(s)	14, 521, 943
SspMI	CTAG	1 cut(s)	755
SstI	GAGCTC	1 cut(s)	414
StyD4I	CCNGG	2 cut(s)	190, 583
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	3 cut(s)	83, 184, 225
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	1 cut(s)	159
TasI	AATT	6 cut(s)	66, 117, 258, 267, 467, 571
TatI	WGTACW	2 cut(s)	83, 791
TfiI	GAWTC	1 cut(s)	770
Tru1I	TTAA	2 cut(s)	534, 657
Tru9I	TTAA	2 cut(s)	534, 657
TscAI	CASTG	2 cut(s)	805, 936
TseFI	GTSAC	1 cut(s)	931
TseI	GCWGC	4 cut(s)	248, 334, 838, 906
Tsp45I	GTSAC	1 cut(s)	931
TspDTI	ATGAA	7 cut(s)	17, 232, 365, 453, 473, 495, 896
TspRI	CASTG	2 cut(s)	805, 936
VpaK11BI	GGWCC	1 cut(s)	552
XagI	CCTNNNNNAGG	1 cut(s)	388
XapI	RAATTY	1 cut(s)	117
XbaI	TCTAGA	1 cut(s)	754
XcmI	CCANNNNNNNNNTGG	1 cut(s)	36
XspI	CTAG	1 cut(s)	755
ZrmI	AGTACT	1 cut(s)	793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.