Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007554

Physical Location & Seq

Genomic Coordinates Forward (+)

4614280 .. 4615702

Gene Structure 1423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG053800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGTGCTCCTCCGCCATGCATGTCTCATTAAATATGCAGAGATATGGTCCCCCTCATTATATCCACATTTGAAAATCCCTGGACTGAATGTTCCCATCCCCACCGGAGCTAGCTTTGGTAATCATCAACAAGATCAGCCTAATTATGAGGAAGAGCCAGTTGATAAGACAAAGCATTGGGGTGATTTGGAGAGAGAGGAAGAAGAGGAAGAACCGATGCAGGGCAAAGATCTAGAAGATGGTGTTGAATCTGTAGATAGCCTTTCAAGTACTCCCACTGGCAATGAGAAACCAGATGTCATTGACCTTCACAAGCAGCAGAGAAAGGAGCCTGAAAGACCTTTATACCAAGTCAGAAAGCATATAATGTGGATGTTACTACAACCTGAAGAGTTAGAAGCTATGGAGAACGTCTTGCCTGAAAAGTATGAACAAGCAAGGGGAGAGAAGAAGCTGCGAAGTCAGCGAGAGGATTTCAGTGACATGGTTGCGGAGGTGGTGTGTGCCTCTCGGTCGAAGAAGAGGAAACGTAAGATGCCATACATGAGAGATCTGAGTTCTATCAAGTTTTGCAAGAAGCCAAGCAGATTACAGGTGACGGTTACAAGAATAGCGGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

207

Amino Acids

24.1

Weight (kDa)

6.34

Isoelectric Point (pI)

66.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0006921 RchiOBHm_Chr5g0006931 RchiOBHm_Chr5g0007041 RchiOBHm_Chr5g0007191 RchiOBHm_Chr5g0007351
rosa_laevigata	RLG00000031441 RLG00000031449 RLG00000031452
rosa_roxburghii	Rroxscaffold_1G00069130
rosa_rugosa	Rorug04G0425600 Rorug04G0425900 Rorug04G0426200 Rorug04G0426300 Rorug04G0426400
rosa_samantha	Rh5AG053200 Rh5AG053500 Rh5AG053800 Rh5AG054700 Rh5CG060800 Rh5CG061100 Rh5CG061200 Rh5CG061400
rosa_wichuraiana	Rw5G005120 Rw5G005160 Rw5G005530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	13, 491, 614
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	1 cut(s)	271
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	3 cut(s)	73, 248, 267
AjnI	CCWGG	1 cut(s)	79
AloI	GAACNNNNNNTCC	2 cut(s)	75, 107
AluBI	AGCT	4 cut(s)	110, 114, 401, 454
AluI	AGCT	4 cut(s)	110, 114, 401, 454
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	29
ApeKI	GCWGC	2 cut(s)	316, 454
AspS9I	GGNCC	1 cut(s)	48
AsuHPI	GGTGA	2 cut(s)	194, 607
AsuNHI	GCTAGC	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	328, 441
BccI	CCATC	2 cut(s)	104, 233
BciT130I	CCWGG	1 cut(s)	81
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	2 cut(s)	111, 233
BfmI	CTRYAG	1 cut(s)	252
BglII	AGATCT	2 cut(s)	229, 550
BisI	GCNGC	2 cut(s)	317, 455
BlsI	GCNGC	2 cut(s)	318, 456
BmcAI	AGTACT	1 cut(s)	271
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	48
BmiI	GGNNCC	2 cut(s)	50, 330
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	2 cut(s)	207, 525
BmtI	GCTAGC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	79
BsaWI	WCCGGW	1 cut(s)	104
BsaXI	ACNNNNNCTCC	2 cut(s)	485, 515
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	2 cut(s)	158, 283
Bse3DI	GCAATG	1 cut(s)	289
BseBI	CCWGG	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	79
BseGI	GGATG	2 cut(s)	96, 378
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	545
BseNI	ACTGG	2 cut(s)	158, 283
BseXI	GCAGC	2 cut(s)	328, 441
Bsh1285I	CGRYCG	1 cut(s)	515
BsiEI	CGRYCG	1 cut(s)	515
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	3 cut(s)	133, 229, 550
BspACI	CCGC	3 cut(s)	13, 491, 614
BspCNI	CTCAG	1 cut(s)	546
BspLI	GGNNCC	2 cut(s)	50, 330
BspOI	GCTAGC	1 cut(s)	114
BspQI	GCTCTTC	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	289
BsrI	ACTGG	2 cut(s)	158, 283
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	3 cut(s)	133, 229, 550
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	1 cut(s)	601
Bst6I	CTCTTC	4 cut(s)	147, 198, 384, 515
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	1 cut(s)	554
BstF5I	GGATG	2 cut(s)	96, 378
BstKTI	GATC	3 cut(s)	136, 232, 553
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	3 cut(s)	133, 229, 550
BstMCI	CGRYCG	1 cut(s)	515
BstMWI	GCNNNNNNNGC	1 cut(s)	463
BstNI	CCWGG	1 cut(s)	81
BstNSI	RCATGY	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	79
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	2 cut(s)	328, 441
BstX2I	RGATCY	2 cut(s)	229, 550
BstYI	RGATCY	2 cut(s)	229, 550
BtsCI	GGATG	2 cut(s)	96, 378
BtsIMutI	CAGTG	2 cut(s)	276, 484
Cac8I	GCNNGC	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	270
CviAII	CATG	4 cut(s)	17, 21, 484, 544
CviJI	RGCY	9 cut(s)	110, 114, 139, 157, 261, 331, 401, 454, 580
CviKI_1	RGCY	9 cut(s)	110, 114, 139, 157, 261, 331, 401, 454, 580
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	1 cut(s)	554
DpnI	GATC	3 cut(s)	135, 231, 552
DpnII	GATC	3 cut(s)	133, 229, 550
Eam1104I	CTCTTC	4 cut(s)	147, 198, 384, 515
EarI	CTCTTC	4 cut(s)	147, 198, 384, 515
Eco47I	GGWCC	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	408
EcoRII	CCWGG	1 cut(s)	79
EcoT22I	ATGCAT	1 cut(s)	22
FaeI	CATG	4 cut(s)	20, 24, 487, 547
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	4 cut(s)	16, 20, 483, 543
FauI	CCCGC	1 cut(s)	607
Fnu4HI	GCNGC	2 cut(s)	317, 455
FokI	GGATG	2 cut(s)	83, 385
Fsp4HI	GCNGC	2 cut(s)	317, 455
FspBI	CTAG	2 cut(s)	111, 233
GluI	GCNGC	2 cut(s)	317, 455
HapII	CCGG	1 cut(s)	105
Hin1II	CATG	4 cut(s)	20, 24, 487, 547
HinfI	GANTC	1 cut(s)	248
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	2 cut(s)	194, 607
Hpy188I	TCNGA	2 cut(s)	356, 555
Hpy188III	TCNNGA	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	601
HpyCH4IV	ACGT	2 cut(s)	411, 529
HpyCH4V	TGCA	4 cut(s)	20, 38, 220, 573
HpyF10VI	GCNNNNNNNGC	1 cut(s)	463
HpyF3I	CTNAG	1 cut(s)	554
HpySE526I	ACGT	2 cut(s)	411, 529
Hsp92II	CATG	4 cut(s)	20, 24, 487, 547
Kzo9I	GATC	3 cut(s)	133, 229, 550
LguI	GCTCTTC	1 cut(s)	147
LmnI	GCTCC	3 cut(s)	12, 107, 328
Lsp1109I	GCAGC	2 cut(s)	328, 441
LweI	GCATC	2 cut(s)	207, 525
MaeI	CTAG	2 cut(s)	111, 233
MaeII	ACGT	2 cut(s)	411, 529
MaeIII	GTNAC	4 cut(s)	375, 479, 595, 601
MalI	GATC	3 cut(s)	135, 231, 552
MboI	GATC	3 cut(s)	133, 229, 550
MboII	GAAGA	9 cut(s)	164, 212, 215, 221, 248, 401, 460, 529, 532
MflI	RGATCY	2 cut(s)	229, 550
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	1 cut(s)	142
MnlI	CCTC	9 cut(s)	20, 64, 142, 190, 199, 463, 487, 516, 517
Mph1103I	ATGCAT	1 cut(s)	22
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	1 cut(s)	180
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	463
NdeII	GATC	3 cut(s)	133, 229, 550
NheI	GCTAGC	1 cut(s)	110
NlaIII	CATG	4 cut(s)	20, 24, 487, 547
NlaIV	GGNNCC	2 cut(s)	50, 330
NmuCI	GTSAC	2 cut(s)	479, 595
NsiI	ATGCAT	1 cut(s)	22
NspI	RCATGY	1 cut(s)	24
PciSI	GCTCTTC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	318, 456
Psp6I	CCWGG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	79
PspN4I	GGNNCC	2 cut(s)	50, 330
PspPI	GGNCC	1 cut(s)	48
PsuI	RGATCY	2 cut(s)	229, 550
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
RseI	CAYNNNNRTG	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	2 cut(s)	317, 455
Sau3AI	GATC	3 cut(s)	133, 229, 550
Sau96I	GGNCC	1 cut(s)	48
ScaI	AGTACT	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	81
SduI	GDGCHC	1 cut(s)	9
SfaNI	GCATC	2 cut(s)	207, 525
SfcI	CTRYAG	1 cut(s)	252
SinI	GGWCC	1 cut(s)	48
SmiMI	CAYNNNNRTG	1 cut(s)	180
Sse9I	AATT	1 cut(s)	142
SsiI	CCGC	3 cut(s)	13, 491, 614
SspMI	CTAG	2 cut(s)	111, 233
StyD4I	CCNGG	1 cut(s)	79
TaaI	ACNGT	1 cut(s)	601
TaiI	ACGT	2 cut(s)	414, 532
TaqI	TCGA	1 cut(s)	515
TaqII	GACCGA	1 cut(s)	501
TasI	AATT	1 cut(s)	142
TatI	WGTACW	1 cut(s)	269
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	2 cut(s)	283, 484
TseFI	GTSAC	2 cut(s)	479, 595
TseI	GCWGC	2 cut(s)	316, 454
Tsp45I	GTSAC	2 cut(s)	479, 595
TspDTI	ATGAA	1 cut(s)	444
TspRI	CASTG	2 cut(s)	283, 484
VpaK11BI	GGWCC	1 cut(s)	48
XbaI	TCTAGA	1 cut(s)	232
XceI	RCATGY	1 cut(s)	24
XspI	CTAG	2 cut(s)	111, 233
ZrmI	AGTACT	1 cut(s)	271
Zsp2I	ATGCAT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.