Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007554

Physical Location & Seq

Genomic Coordinates Forward (+)

4551388 .. 4552414

Gene Structure 1027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG053500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCTTGTGATTTGGACAATCAGGAAGAGCCAGTTGATAAGACAAAGCATTGGGGTGATTTGGAGAGAGAGGAAGAAGAGGAAGAACCGATGGAGGGCAAAGATCTAGAAGATGGTATTGAATCTGTAGATAGCCTTTCAAGTACTCCCACAGGCAATGAGAAACCTGATGTCATTGACCTTCACAAGCAGCAGAGAATTAGGGGCCTGAAAGACCTTTATACCAAGTATGAACAAGCATTCGCAAGGGGGGAGAAGAAGCTGCGAAGTCAGCGAGAGGATCTCAGTGACATGGTTGCGGAGGTGGTGTGTGCCTCTCGGTCGAAGAAGAGGAAACGTAAGATGTCATACATGAGAGATCTGAGTTCTATCAAGTTTTGCAAGAAGCCAAGCAAATTACAGGTGACGGTTACAAGAATAGCGGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

143

Amino Acids

16.51

Weight (kDa)

6.2

Isoelectric Point (pI)

61.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0006921 RchiOBHm_Chr5g0006931 RchiOBHm_Chr5g0007041 RchiOBHm_Chr5g0007191 RchiOBHm_Chr5g0007351
rosa_laevigata	RLG00000031441 RLG00000031449 RLG00000031452
rosa_roxburghii	Rroxscaffold_1G00069130
rosa_rugosa	Rorug04G0425600 Rorug04G0425900 Rorug04G0426200 Rorug04G0426300 Rorug04G0426400
rosa_samantha	Rh5AG053200 Rh5AG053500 Rh5AG053800 Rh5AG054700 Rh5CG060800 Rh5CG061100 Rh5CG061200 Rh5CG061400
rosa_wichuraiana	Rw5G005120 Rw5G005160 Rw5G005530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	299, 422
AclWI	GGATC	1 cut(s)	288
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	122, 141
AluBI	AGCT	1 cut(s)	262
AluI	AGCT	1 cut(s)	262
AlwI	GGATC	1 cut(s)	288
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	2 cut(s)	190, 262
AspS9I	GGNCC	1 cut(s)	205
AsuHPI	GGTGA	2 cut(s)	68, 415
BbvI	GCAGC	2 cut(s)	202, 249
BccI	CCATC	2 cut(s)	85, 107
BfaI	CTAG	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	126
BglII	AGATCT	2 cut(s)	103, 358
BisI	GCNGC	2 cut(s)	191, 263
BlsI	GCNGC	2 cut(s)	192, 264
BmcAI	AGTACT	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	206
BplI	GAGNNNNNCTC	2 cut(s)	267, 299
BsaXI	ACNNNNNCTCC	2 cut(s)	293, 323
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	32
Bse3DI	GCAATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMI	GCAATG	1 cut(s)	163
BseMII	CTCAG	2 cut(s)	298, 353
BseNI	ACTGG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	202, 249
Bsh1285I	CGRYCG	1 cut(s)	323
BshFI	GGCC	1 cut(s)	207
BsiEI	CGRYCG	1 cut(s)	323
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmI	GAATGC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	207
Bsp143I	GATC	3 cut(s)	103, 280, 358
BspACI	CCGC	2 cut(s)	299, 422
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	2 cut(s)	297, 354
BspLI	GGNNCC	1 cut(s)	206
BspPI	GGATC	1 cut(s)	288
BspQI	GCTCTTC	1 cut(s)	21
BsrDI	GCAATG	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	32
BssMI	GATC	3 cut(s)	103, 280, 358
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	3 cut(s)	21, 72, 323
BstDEI	CTNAG	2 cut(s)	284, 362
BstKTI	GATC	3 cut(s)	106, 283, 361
BstMBI	GATC	3 cut(s)	103, 280, 358
BstMCI	CGRYCG	1 cut(s)	323
BstMWI	GCNNNNNNNGC	1 cut(s)	271
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	202, 249
BstX2I	RGATCY	3 cut(s)	103, 280, 358
BstYI	RGATCY	3 cut(s)	103, 280, 358
BsuRI	GGCC	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	2 cut(s)	292, 352
CviJI	RGCY	6 cut(s)	5, 31, 135, 207, 262, 388
CviKI_1	RGCY	6 cut(s)	5, 31, 135, 207, 262, 388
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	2 cut(s)	284, 362
DpnI	GATC	3 cut(s)	105, 282, 360
DpnII	GATC	3 cut(s)	103, 280, 358
Eam1104I	CTCTTC	3 cut(s)	21, 72, 323
EarI	CTCTTC	3 cut(s)	21, 72, 323
EcoO109I	RGGNCCY	1 cut(s)	205
FaeI	CATG	2 cut(s)	295, 355
FaiI	YATR	5 cut(s)	222, 231, 293, 349, 353
FatI	CATG	2 cut(s)	291, 351
FauI	CCCGC	1 cut(s)	415
Fnu4HI	GCNGC	2 cut(s)	191, 263
Fsp4HI	GCNGC	2 cut(s)	191, 263
FspBI	CTAG	1 cut(s)	107
GluI	GCNGC	2 cut(s)	191, 263
HaeIII	GGCC	1 cut(s)	207
Hin1II	CATG	2 cut(s)	295, 355
HinfI	GANTC	1 cut(s)	122
HphI	GGTGA	2 cut(s)	68, 415
Hpy188I	TCNGA	1 cut(s)	363
Hpy188III	TCNNGA	2 cut(s)	23, 107
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	1 cut(s)	381
HpyF10VI	GCNNNNNNNGC	1 cut(s)	271
HpyF3I	CTNAG	2 cut(s)	284, 362
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	2 cut(s)	295, 355
Kzo9I	GATC	3 cut(s)	103, 280, 358
LguI	GCTCTTC	1 cut(s)	21
LpnPI	CCDG	6 cut(s)	8, 45, 138, 180, 221, 386
Lsp1109I	GCAGC	2 cut(s)	202, 249
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	1 cut(s)	337
MaeIII	GTNAC	3 cut(s)	287, 403, 409
MalI	GATC	3 cut(s)	105, 282, 360
MboI	GATC	3 cut(s)	103, 280, 358
MboII	GAAGA	8 cut(s)	38, 86, 89, 95, 122, 268, 337, 340
MflI	RGATCY	3 cut(s)	103, 280, 358
MluCI	AATT	2 cut(s)	198, 395
MnlI	CCTC	7 cut(s)	64, 73, 88, 271, 295, 324, 325
MslI	CAYNNNNRTG	1 cut(s)	54
Mva1269I	GAATGC	1 cut(s)	239
MwoI	GCNNNNNNNGC	1 cut(s)	271
NdeII	GATC	3 cut(s)	103, 280, 358
NlaIII	CATG	2 cut(s)	295, 355
NlaIV	GGNNCC	1 cut(s)	206
NmuCI	GTSAC	2 cut(s)	287, 403
PciSI	GCTCTTC	1 cut(s)	21
PctI	GAATGC	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	192, 264
PspN4I	GGNNCC	1 cut(s)	206
PspPI	GGNCC	1 cut(s)	205
PsuI	RGATCY	3 cut(s)	103, 280, 358
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
RseI	CAYNNNNRTG	1 cut(s)	54
SapI	GCTCTTC	1 cut(s)	21
SatI	GCNGC	2 cut(s)	191, 263
Sau3AI	GATC	3 cut(s)	103, 280, 358
Sau96I	GGNCC	1 cut(s)	205
ScaI	AGTACT	1 cut(s)	145
SetI	ASST	7 cut(s)	169, 183, 219, 264, 306, 340, 405
SfcI	CTRYAG	1 cut(s)	126
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	2 cut(s)	198, 395
SsiI	CCGC	2 cut(s)	299, 422
SspMI	CTAG	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	409
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	1 cut(s)	323
TaqII	GACCGA	1 cut(s)	309
TasI	AATT	2 cut(s)	198, 395
TatI	WGTACW	1 cut(s)	143
TfiI	GAWTC	1 cut(s)	122
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	2 cut(s)	287, 403
TseI	GCWGC	2 cut(s)	190, 262
Tsp45I	GTSAC	2 cut(s)	287, 403
TspDTI	ATGAA	1 cut(s)	246
TspRI	CASTG	1 cut(s)	292
XbaI	TCTAGA	1 cut(s)	106
XspI	CTAG	1 cut(s)	107
ZrmI	AGTACT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.