Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007554

Physical Location & Seq

Genomic Coordinates Forward (+)

4503718 .. 4505591

Gene Structure 1874 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG060800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCCAGAGCTCACAACACTTGGTGATCTGTACCACGAAGGGAAAGAGTTTGAGGAAATATTAAGAGAGATGAAGCCAGAATTGCTGTCATATGAACTGAAAGAAGCTCTTGTTCTCTTTAGCTCTGACGTGTTTGGTGTTCAGCAACAAGATCAGCCTAATTATGAGGAAGAGCCAGTTGATAAGACAAAGCATTTGGGTGATTTGGAGAGAGAGGAAGAAGAGGAAGAACCGATGGAGGGCAAAGATCTAGAAGATGGTATTGAATCTGCAGGTAGCCTTTCAAGACTTCCGCACTTCCTTCTCAGTACTCCCACTGGCAATGAGAAACCTGATGTCATTGACCTTCACAAGCAGCAGAGAAAGGAGCCTGAAAGACCTTTATACCAAGTAAGTACGATGGCAGACACTTTCTTTAACGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

141

Amino Acids

16.31

Weight (kDa)

4.36

Isoelectric Point (pI)

57.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0006921 RchiOBHm_Chr5g0006931 RchiOBHm_Chr5g0007041 RchiOBHm_Chr5g0007191 RchiOBHm_Chr5g0007351
rosa_laevigata	RLG00000031441 RLG00000031449 RLG00000031452
rosa_roxburghii	Rroxscaffold_1G00069130
rosa_rugosa	Rorug04G0425600 Rorug04G0425900 Rorug04G0426200 Rorug04G0426300 Rorug04G0426400
rosa_samantha	Rh5AG053200 Rh5AG053500 Rh5AG053800 Rh5AG054700 Rh5CG060800 Rh5CG061100 Rh5CG061200 Rh5CG061400
rosa_wichuraiana	Rw5G005120 Rw5G005160 Rw5G005530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	263
AciI	CCGC	1 cut(s)	293
AdeI	CACNNNGTG	1 cut(s)	23
AfaI	GTAC	3 cut(s)	32, 310, 397
AfiI	CCNNNNNNNGG	1 cut(s)	239
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	2 cut(s)	266, 285
AjiI	CACGTC	1 cut(s)	130
AluBI	AGCT	3 cut(s)	10, 107, 123
AluI	AGCT	3 cut(s)	10, 107, 123
Alw21I	GWGCWC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	355
ArsI	GACNNNNNNTTYG	2 cut(s)	178, 210
AsuHPI	GGTGA	2 cut(s)	35, 212
BanII	GRGCYC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	3 cut(s)	229, 251, 394
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	270
BfuAI	ACCTGC	1 cut(s)	263
BglII	AGATCT	1 cut(s)	247
BisI	GCNGC	1 cut(s)	356
BlsI	GCNGC	1 cut(s)	357
BmcAI	AGTACT	1 cut(s)	310
BmgBI	CACGTC	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	2 cut(s)	176, 322
Bse3DI	GCAATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMI	GCAATG	1 cut(s)	328
BseMII	CTCAG	1 cut(s)	319
BseNI	ACTGG	2 cut(s)	176, 322
BseXI	GCAGC	1 cut(s)	367
BsiHKAI	GWGCWC	1 cut(s)	12
BslI	CCNNNNNNNGG	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	3 cut(s)	25, 151, 247
BspACI	CCGC	1 cut(s)	293
BspCNI	CTCAG	1 cut(s)	318
BspLI	GGNNCC	1 cut(s)	369
BspMAI	CTGCAG	1 cut(s)	274
BspMI	ACCTGC	1 cut(s)	263
BspQI	GCTCTTC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	328
BsrI	ACTGG	2 cut(s)	176, 322
BssMI	GATC	3 cut(s)	25, 151, 247
Bst6I	CTCTTC	2 cut(s)	165, 216
BstDEI	CTNAG	1 cut(s)	305
BstKTI	GATC	3 cut(s)	28, 154, 250
BstMBI	GATC	3 cut(s)	25, 151, 247
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	367
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BtrI	CACGTC	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	315
BveI	ACCTGC	1 cut(s)	263
Csp6I	GTAC	3 cut(s)	31, 309, 396
CviJI	RGCY	8 cut(s)	10, 76, 107, 123, 157, 175, 279, 370
CviKI_1	RGCY	8 cut(s)	10, 76, 107, 123, 157, 175, 279, 370
CviQI	GTAC	3 cut(s)	31, 309, 396
DdeI	CTNAG	1 cut(s)	305
DpnI	GATC	3 cut(s)	27, 153, 249
DpnII	GATC	3 cut(s)	25, 151, 247
DraIII	CACNNNGTG	1 cut(s)	23
Eam1104I	CTCTTC	2 cut(s)	165, 216
EarI	CTCTTC	2 cut(s)	165, 216
Ecl136II	GAGCTC	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	12
Eco53kI	GAGCTC	1 cut(s)	10
EcoICRI	GAGCTC	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	12
FaiI	YATR	4 cut(s)	91, 93, 165, 385
FalI	AAGNNNNNCTT	2 cut(s)	93, 125
FauNDI	CATATG	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	356
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	1 cut(s)	356
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	1 cut(s)	356
HinfI	GANTC	1 cut(s)	266
HphI	GGTGA	2 cut(s)	35, 212
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	2 cut(s)	251, 285
HpyAV	CCTTC	3 cut(s)	32, 311, 356
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	1 cut(s)	305
HpySE526I	ACGT	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	25, 151, 247
LguI	GCTCTTC	1 cut(s)	165
LmnI	GCTCC	1 cut(s)	367
LpnPI	CCDG	7 cut(s)	18, 90, 189, 258, 303, 345, 384
Lsp1109I	GCAGC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	129
MalI	GATC	3 cut(s)	27, 153, 249
MboI	GATC	3 cut(s)	25, 151, 247
MboII	GAAGA	5 cut(s)	182, 230, 233, 239, 266
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	2 cut(s)	80, 160
MnlI	CCTC	5 cut(s)	46, 160, 208, 217, 232
MseI	TTAA	2 cut(s)	62, 417
MslI	CAYNNNNRTG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	82
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	3 cut(s)	25, 151, 247
NlaIV	GGNNCC	1 cut(s)	369
PciSI	GCTCTTC	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	357
Psp124BI	GAGCTC	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	369
PstI	CTGCAG	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	3 cut(s)	32, 310, 397
RsaNI	GTAC	3 cut(s)	31, 309, 396
RseI	CAYNNNNRTG	1 cut(s)	198
SacI	GAGCTC	1 cut(s)	12
SapI	GCTCTTC	1 cut(s)	165
SaqAI	TTAA	2 cut(s)	62, 417
SatI	GCNGC	1 cut(s)	356
Sau3AI	GATC	3 cut(s)	25, 151, 247
ScaI	AGTACT	1 cut(s)	310
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	8 cut(s)	12, 109, 125, 132, 277, 334, 348, 382
SfcI	CTRYAG	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	198
Sse9I	AATT	2 cut(s)	80, 160
SsiI	CCGC	1 cut(s)	293
SspI	AATATT	1 cut(s)	60
SspMI	CTAG	1 cut(s)	251
SstI	GAGCTC	1 cut(s)	12
TaiI	ACGT	1 cut(s)	132
TasI	AATT	2 cut(s)	80, 160
TatI	WGTACW	1 cut(s)	308
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	2 cut(s)	62, 417
Tru9I	TTAA	2 cut(s)	62, 417
TscAI	CASTG	1 cut(s)	322
TseI	GCWGC	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	86, 108
TspRI	CASTG	1 cut(s)	322
XbaI	TCTAGA	1 cut(s)	250
XspI	CTAG	1 cut(s)	251
ZrmI	AGTACT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.