Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007554

Physical Location & Seq

Genomic Coordinates Forward (+)

4599853 .. 4601275

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG061400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGTGCTCCTCCGCCATGCATGTCTCATTAAATATGCAGAGATATGGTCCCCCTCATTATATCCACATTTGAAAATCCCTGGACTGAATGTTCCCATCCCCACCGGAGCTAGCTTTGGTAATCATCAACAAGATCAGCCTAATTATGAGGAAGAGCCAGTTGATAAGACAAAGCATTGGGGTGATTTGGAGAGAGAGGAAGAAGAGGAAGAACCGATGCAGGGCAAAGATCTAGAAGATGGTGTTGAATCTGTAGATAGCCTTTCAAGTACTCCCACTGGCAATGAGAAACCAGATGTCATTGACCTTCACAAGCAGCAGAGAAAGGAGCCTGAAAGACCTTTATACCAATTTGTGACTTGTAATGTTTTCCACAGGTATGAACAAGCAAGGGGAGAGAAGAAGCTGCGAAGTCAGCGAGAGGATTTCAGTGACATGGTTGCGGAGGTGGTGTGTGCCTCTCGGTCGAAGAAGAGGAAACGTAAGATGCCATACATGAGAGATCTGAGTTCTATCAAGTTTTGCAAGAAGCCAAGCAGATTACAGGTGACGGTTACAAGAATAGCGGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

191

Amino Acids

22.15

Weight (kDa)

7.69

Isoelectric Point (pI)

59.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0006921 RchiOBHm_Chr5g0006931 RchiOBHm_Chr5g0007041 RchiOBHm_Chr5g0007191 RchiOBHm_Chr5g0007351
rosa_laevigata	RLG00000031441 RLG00000031449 RLG00000031452
rosa_roxburghii	Rroxscaffold_1G00069130
rosa_rugosa	Rorug04G0425600 Rorug04G0425900 Rorug04G0426200 Rorug04G0426300 Rorug04G0426400
rosa_samantha	Rh5AG053200 Rh5AG053500 Rh5AG053800 Rh5AG054700 Rh5CG060800 Rh5CG061100 Rh5CG061200 Rh5CG061400
rosa_wichuraiana	Rw5G005120 Rw5G005160 Rw5G005530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	13, 443, 566
AfaI	GTAC	1 cut(s)	271
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	3 cut(s)	73, 248, 267
AjnI	CCWGG	1 cut(s)	79
AloI	GAACNNNNNNTCC	2 cut(s)	75, 107
AluBI	AGCT	3 cut(s)	110, 114, 406
AluI	AGCT	3 cut(s)	110, 114, 406
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	29
ApeKI	GCWGC	2 cut(s)	316, 406
AspS9I	GGNCC	1 cut(s)	48
AsuHPI	GGTGA	2 cut(s)	194, 559
AsuNHI	GCTAGC	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	328, 393
BccI	CCATC	2 cut(s)	104, 233
BciT130I	CCWGG	1 cut(s)	81
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	2 cut(s)	111, 233
BfmI	CTRYAG	1 cut(s)	252
BglII	AGATCT	2 cut(s)	229, 502
BisI	GCNGC	2 cut(s)	317, 407
BlsI	GCNGC	2 cut(s)	318, 408
BmcAI	AGTACT	1 cut(s)	271
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	48
BmiI	GGNNCC	2 cut(s)	50, 330
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	2 cut(s)	207, 477
BmtI	GCTAGC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	79
BsaWI	WCCGGW	1 cut(s)	104
BsaXI	ACNNNNNCTCC	2 cut(s)	437, 467
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	2 cut(s)	158, 283
Bse3DI	GCAATG	1 cut(s)	289
BseBI	CCWGG	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	79
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	497
BseNI	ACTGG	2 cut(s)	158, 283
BseXI	GCAGC	2 cut(s)	328, 393
Bsh1285I	CGRYCG	1 cut(s)	467
BsiEI	CGRYCG	1 cut(s)	467
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	3 cut(s)	133, 229, 502
BspACI	CCGC	3 cut(s)	13, 443, 566
BspCNI	CTCAG	1 cut(s)	498
BspLI	GGNNCC	2 cut(s)	50, 330
BspOI	GCTAGC	1 cut(s)	114
BspQI	GCTCTTC	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	289
BsrI	ACTGG	2 cut(s)	158, 283
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	3 cut(s)	133, 229, 502
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	1 cut(s)	553
Bst6I	CTCTTC	3 cut(s)	147, 198, 467
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	1 cut(s)	506
BstF5I	GGATG	1 cut(s)	96
BstKTI	GATC	3 cut(s)	136, 232, 505
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	3 cut(s)	133, 229, 502
BstMCI	CGRYCG	1 cut(s)	467
BstMWI	GCNNNNNNNGC	1 cut(s)	415
BstNI	CCWGG	1 cut(s)	81
BstNSI	RCATGY	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	79
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	2 cut(s)	328, 393
BstX2I	RGATCY	2 cut(s)	229, 502
BstYI	RGATCY	2 cut(s)	229, 502
BtsCI	GGATG	1 cut(s)	96
BtsIMutI	CAGTG	2 cut(s)	276, 436
Cac8I	GCNNGC	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	270
CviAII	CATG	4 cut(s)	17, 21, 436, 496
CviJI	RGCY	8 cut(s)	110, 114, 139, 157, 261, 331, 406, 532
CviKI_1	RGCY	8 cut(s)	110, 114, 139, 157, 261, 331, 406, 532
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	1 cut(s)	506
DpnI	GATC	3 cut(s)	135, 231, 504
DpnII	GATC	3 cut(s)	133, 229, 502
Eam1104I	CTCTTC	3 cut(s)	147, 198, 467
EarI	CTCTTC	3 cut(s)	147, 198, 467
Eco47I	GGWCC	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	79
EcoT22I	ATGCAT	1 cut(s)	22
FaeI	CATG	4 cut(s)	20, 24, 439, 499
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	4 cut(s)	16, 20, 435, 495
FauI	CCCGC	1 cut(s)	559
Fnu4HI	GCNGC	2 cut(s)	317, 407
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	2 cut(s)	317, 407
FspBI	CTAG	2 cut(s)	111, 233
GluI	GCNGC	2 cut(s)	317, 407
HapII	CCGG	1 cut(s)	105
Hin1II	CATG	4 cut(s)	20, 24, 439, 499
HinfI	GANTC	1 cut(s)	248
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	2 cut(s)	194, 559
Hpy188I	TCNGA	1 cut(s)	507
Hpy188III	TCNNGA	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	553
HpyCH4IV	ACGT	1 cut(s)	481
HpyCH4V	TGCA	4 cut(s)	20, 38, 220, 525
HpyF10VI	GCNNNNNNNGC	1 cut(s)	415
HpyF3I	CTNAG	1 cut(s)	506
HpySE526I	ACGT	1 cut(s)	481
Hsp92II	CATG	4 cut(s)	20, 24, 439, 499
Kzo9I	GATC	3 cut(s)	133, 229, 502
LguI	GCTCTTC	1 cut(s)	147
LmnI	GCTCC	3 cut(s)	12, 107, 328
Lsp1109I	GCAGC	2 cut(s)	328, 393
LweI	GCATC	2 cut(s)	207, 477
MaeI	CTAG	2 cut(s)	111, 233
MaeII	ACGT	1 cut(s)	481
MaeIII	GTNAC	4 cut(s)	355, 431, 547, 553
MalI	GATC	3 cut(s)	135, 231, 504
MboI	GATC	3 cut(s)	133, 229, 502
MboII	GAAGA	8 cut(s)	164, 212, 215, 221, 248, 412, 481, 484
MflI	RGATCY	2 cut(s)	229, 502
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	2 cut(s)	142, 350
MnlI	CCTC	9 cut(s)	20, 64, 142, 190, 199, 415, 439, 468, 469
Mph1103I	ATGCAT	1 cut(s)	22
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	2 cut(s)	180, 378
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	415
NdeII	GATC	3 cut(s)	133, 229, 502
NheI	GCTAGC	1 cut(s)	110
NlaIII	CATG	4 cut(s)	20, 24, 439, 499
NlaIV	GGNNCC	2 cut(s)	50, 330
NmuCI	GTSAC	3 cut(s)	355, 431, 547
NsiI	ATGCAT	1 cut(s)	22
NspI	RCATGY	1 cut(s)	24
PciSI	GCTCTTC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	318, 408
Psp6I	CCWGG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	79
PspN4I	GGNNCC	2 cut(s)	50, 330
PspPI	GGNCC	1 cut(s)	48
PsuI	RGATCY	2 cut(s)	229, 502
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
RseI	CAYNNNNRTG	2 cut(s)	180, 378
SapI	GCTCTTC	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	2 cut(s)	317, 407
Sau3AI	GATC	3 cut(s)	133, 229, 502
Sau96I	GGNCC	1 cut(s)	48
ScaI	AGTACT	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	81
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	9 cut(s)	112, 116, 309, 343, 380, 408, 450, 484, 549
SfaNI	GCATC	2 cut(s)	207, 477
SfcI	CTRYAG	1 cut(s)	252
SinI	GGWCC	1 cut(s)	48
SmiMI	CAYNNNNRTG	2 cut(s)	180, 378
Sse9I	AATT	2 cut(s)	142, 350
SsiI	CCGC	3 cut(s)	13, 443, 566
SspMI	CTAG	2 cut(s)	111, 233
StyD4I	CCNGG	1 cut(s)	79
TaaI	ACNGT	1 cut(s)	553
TaiI	ACGT	1 cut(s)	484
TaqI	TCGA	1 cut(s)	467
TaqII	GACCGA	1 cut(s)	453
TasI	AATT	2 cut(s)	142, 350
TatI	WGTACW	1 cut(s)	269
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	2 cut(s)	283, 436
TseFI	GTSAC	3 cut(s)	355, 431, 547
TseI	GCWGC	2 cut(s)	316, 406
Tsp45I	GTSAC	3 cut(s)	355, 431, 547
TspDTI	ATGAA	1 cut(s)	396
TspRI	CASTG	2 cut(s)	283, 436
VpaK11BI	GGWCC	1 cut(s)	48
XbaI	TCTAGA	1 cut(s)	232
XceI	RCATGY	1 cut(s)	24
XspI	CTAG	2 cut(s)	111, 233
ZrmI	AGTACT	1 cut(s)	271
Zsp2I	ATGCAT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.