Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007554

Physical Location & Seq

Genomic Coordinates Forward (+)

4371643 .. 4374338

Gene Structure 2696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28813

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTTGTTGAGGTGTGGGATGCAACTGCTTTTCTTTCTGAAATTGTATCGGAATACTGTACTGGTGCCAAGGCATTGGTGCCAGAACAGGAAATTTCTACAGGAGAGCAATGTGGCTACTGTGGAGCCTGGACTTGGTAAATGTGGTACCGGAAAACAATCGTTTCAGCTTCCTGATTTCATTGCTGCAACTGGAATTGAGAAAATTAGACAGGCATACATTGAAAAAGAAGATAGTAAGAAGACAAAGCAAGTGCAACGAGAATGTATGCAGCCAAAGATGCGCAAAACAGATATTGATTATCTGGTTCTTCATGATGCCTTTTTCAAGTACCAAACTATGCCAGAGCTCACAACACTTGGTGATCTGTACCATGAAGGGAAAGAGTTTGAGGTAAAATTAAGAGAGATGAAGCCAGAATTGCTGTCATATGAACTGAAAGAAGCTCTTGGTATGCCAGATGGTGCTCCTCCGCCATGTCTCATCAAATATGCAGAGATATGGTCCCCCTCATTATATCCACATTTGAAAATCCCTGGACTGAATGCTCCCATCCCCACCGGAGCTAGCTTTGGTAATCATGTAGGTGGCTGTGGAAAGCCTCTGTTTAAGAAGTTTTTTGAAGAAGAGCCAGTTGATAAGACAAAGCATTGGGGTGATTTGGAGAGAGACGAAGAAGAGGGCAAAGATCTAGAAGATGGTGTTGAATCTGTAGATAGCCTTTCAAGTACTCCCACTGGCAATGAGAAACCAGATGTCATTGACCTTCACAAGCAGCAGAGAAAGGAGCCTGAAAGACCTTTATACCAAGTAAGTACGATGGCAGACACTTTCTTTAACGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

281

Amino Acids

32.16

Weight (kDa)

5.75

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF382	PF04037	9 - 129	8.3e-36	Domain of unknown function (DUF382)
PSP	PF04046	138 - 183	4.2e-11	PSP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0006921 RchiOBHm_Chr5g0006931 RchiOBHm_Chr5g0007041 RchiOBHm_Chr5g0007191 RchiOBHm_Chr5g0007351
rosa_laevigata	RLG00000031441 RLG00000031449 RLG00000031452
rosa_roxburghii	Rroxscaffold_1G00069130
rosa_rugosa	Rorug04G0425600 Rorug04G0425900 Rorug04G0426200 Rorug04G0426300 Rorug04G0426400
rosa_samantha	Rh5AG053200 Rh5AG053500 Rh5AG053800 Rh5AG054700 Rh5CG060800 Rh5CG061100 Rh5CG061200 Rh5CG061400
rosa_wichuraiana	Rw5G005120 Rw5G005160 Rw5G005530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	284
Acc65I	GGTACC	1 cut(s)	146
AccB1I	GGYRCC	3 cut(s)	64, 78, 146
AciI	CCGC	1 cut(s)	473
AcsI	RAATTY	1 cut(s)	92
AdeI	CACNNNGTG	1 cut(s)	362
AfaI	GTAC	6 cut(s)	60, 148, 332, 371, 730, 817
AfiI	CCNNNNNNNGG	1 cut(s)	134
AgsI	TTSAA	6 cut(s)	224, 328, 529, 623, 707, 726
AjnI	CCWGG	2 cut(s)	127, 535
AluBI	AGCT	5 cut(s)	169, 349, 446, 566, 570
AluI	AGCT	5 cut(s)	169, 349, 446, 566, 570
Alw21I	GWGCWC	2 cut(s)	351, 469
Alw26I	GTCTC	2 cut(s)	485, 663
ApeKI	GCWGC	3 cut(s)	185, 271, 775
ApoI	RAATTY	1 cut(s)	92
Asp718I	GGTACC	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	504
AsuHPI	GGTGA	2 cut(s)	374, 668
AsuNHI	GCTAGC	1 cut(s)	566
AvaII	GGWCC	1 cut(s)	504
BanI	GGYRCC	3 cut(s)	64, 78, 146
BanII	GRGCYC	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	248
Bbv12I	GWGCWC	2 cut(s)	351, 469
BbvI	GCAGC	3 cut(s)	172, 283, 787
BccI	CCATC	4 cut(s)	455, 560, 692, 814
BciT130I	CCWGG	2 cut(s)	129, 537
BcoDI	GTCTC	2 cut(s)	485, 663
BfaI	CTAG	2 cut(s)	567, 692
BfmI	CTRYAG	2 cut(s)	98, 711
BglII	AGATCT	1 cut(s)	688
BisI	GCNGC	3 cut(s)	186, 272, 776
BlsI	GCNGC	3 cut(s)	187, 273, 777
BmcAI	AGTACT	1 cut(s)	730
Bme1390I	CCNGG	2 cut(s)	129, 537
Bme18I	GGWCC	1 cut(s)	504
BmgT120I	GGNCC	1 cut(s)	504
BmiI	GGNNCC	6 cut(s)	66, 80, 126, 148, 506, 789
BmrFI	CCNGG	2 cut(s)	129, 537
BmsI	GCATC	3 cut(s)	9, 270, 307
BmtI	GCTAGC	1 cut(s)	570
BpiI	GAAGAC	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	68, 535
BsaWI	WCCGGW	2 cut(s)	149, 560
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse1I	ACTGG	4 cut(s)	66, 196, 632, 742
Bse3DI	GCAATG	3 cut(s)	115, 180, 748
BseBI	CCWGG	2 cut(s)	129, 537
BseDI	CCNNGG	2 cut(s)	68, 535
BseGI	GGATG	2 cut(s)	24, 552
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMI	GCAATG	3 cut(s)	115, 180, 748
BseNI	ACTGG	4 cut(s)	66, 196, 632, 742
BseRI	GAGGAG	1 cut(s)	459
BseXI	GCAGC	3 cut(s)	172, 283, 787
BshNI	GGYRCC	3 cut(s)	64, 78, 146
BsiHKAI	GWGCWC	2 cut(s)	351, 469
BsiSI	CCGG	2 cut(s)	150, 561
BslFI	GGGAC	1 cut(s)	490
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmAI	GTCTC	2 cut(s)	485, 663
BsmBI	CGTCTC	1 cut(s)	663
BsmFI	GGGAC	1 cut(s)	490
BsmI	GAATGC	1 cut(s)	550
Bsp1286I	GDGCHC	2 cut(s)	351, 469
Bsp143I	GATC	2 cut(s)	364, 688
BspACI	CCGC	1 cut(s)	473
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	6 cut(s)	66, 80, 126, 148, 506, 789
BspOI	GCTAGC	1 cut(s)	570
BspQI	GCTCTTC	1 cut(s)	621
BspT107I	GGYRCC	3 cut(s)	64, 78, 146
BsrDI	GCAATG	3 cut(s)	115, 180, 748
BsrI	ACTGG	4 cut(s)	66, 196, 632, 742
BssECI	CCNNGG	2 cut(s)	68, 535
BssMI	GATC	2 cut(s)	364, 688
BssT1I	CCWWGG	1 cut(s)	68
Bst2UI	CCWGG	2 cut(s)	129, 537
Bst4CI	ACNGT	2 cut(s)	58, 121
Bst6I	CTCTTC	2 cut(s)	621, 672
BstC8I	GCNNGC	1 cut(s)	568
BstF5I	GGATG	2 cut(s)	24, 552
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	2 cut(s)	367, 691
BstMAI	GTCTC	2 cut(s)	485, 663
BstMBI	GATC	2 cut(s)	364, 688
BstMWI	GCNNNNNNNGC	2 cut(s)	280, 421
BstNI	CCWGG	2 cut(s)	129, 537
BstSCI	CCNGG	2 cut(s)	127, 535
BstSFI	CTRYAG	2 cut(s)	98, 711
BstV1I	GCAGC	3 cut(s)	172, 283, 787
BstV2I	GAAGAC	1 cut(s)	248
BstX2I	RGATCY	1 cut(s)	688
BstXI	CCANNNNNNTGG	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	688
BtsCI	GGATG	2 cut(s)	24, 552
BtsIMutI	CAGTG	1 cut(s)	735
Cac8I	GCNNGC	1 cut(s)	568
CciI	TCATGA	1 cut(s)	313
CfoI	GCGC	1 cut(s)	285
Cfr13I	GGNCC	1 cut(s)	504
Csp6I	GTAC	6 cut(s)	59, 147, 331, 370, 729, 816
CviAII	CATG	4 cut(s)	314, 374, 477, 581
CviQI	GTAC	6 cut(s)	59, 147, 331, 370, 729, 816
DpnI	GATC	2 cut(s)	366, 690
DpnII	GATC	2 cut(s)	364, 688
DraIII	CACNNNGTG	1 cut(s)	362
Eam1104I	CTCTTC	2 cut(s)	621, 672
EarI	CTCTTC	2 cut(s)	621, 672
EciI	GGCGGA	1 cut(s)	462
Ecl136II	GAGCTC	1 cut(s)	349
Eco130I	CCWWGG	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	504
Eco53kI	GAGCTC	1 cut(s)	349
EcoICRI	GAGCTC	1 cut(s)	349
EcoRII	CCWGG	2 cut(s)	127, 535
EcoT14I	CCWWGG	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	68
Esp3I	CGTCTC	1 cut(s)	663
FaeI	CATG	4 cut(s)	317, 377, 480, 584
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	4 cut(s)	313, 373, 476, 580
FauNDI	CATATG	1 cut(s)	430
Fnu4HI	GCNGC	3 cut(s)	186, 272, 776
FokI	GGATG	2 cut(s)	31, 539
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	3 cut(s)	186, 272, 776
FspBI	CTAG	2 cut(s)	567, 692
FspI	TGCGCA	1 cut(s)	284
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	3 cut(s)	186, 272, 776
HapII	CCGG	2 cut(s)	150, 561
HhaI	GCGC	1 cut(s)	285
Hin1II	CATG	4 cut(s)	317, 377, 480, 584
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HinfI	GANTC	1 cut(s)	707
HpaII	CCGG	2 cut(s)	150, 561
HphI	GGTGA	2 cut(s)	374, 668
Hpy188I	TCNGA	2 cut(s)	39, 51
Hpy188III	TCNNGA	3 cut(s)	173, 314, 692
HpyAV	CCTTC	2 cut(s)	371, 776
HpyCH4III	ACNGT	2 cut(s)	58, 121
HpyCH4V	TGCA	5 cut(s)	22, 188, 256, 271, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	280, 421
Hsp92II	CATG	4 cut(s)	317, 377, 480, 584
HspAI	GCGC	1 cut(s)	283
KpnI	GGTACC	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	364, 688
LguI	GCTCTTC	1 cut(s)	621
LmnI	GCTCC	5 cut(s)	124, 472, 553, 563, 787
Lsp1109I	GCAGC	3 cut(s)	172, 283, 787
LweI	GCATC	3 cut(s)	9, 270, 307
MaeI	CTAG	2 cut(s)	567, 692
MalI	GATC	2 cut(s)	366, 690
MboI	GATC	2 cut(s)	364, 688
MboII	GAAGA	8 cut(s)	242, 253, 302, 635, 638, 686, 689, 707
MflI	RGATCY	1 cut(s)	688
MhlI	GDGCHC	2 cut(s)	351, 469
MluCI	AATT	6 cut(s)	41, 92, 195, 204, 398, 419
MnlI	CCTC	6 cut(s)	3, 385, 480, 520, 612, 673
MseI	TTAA	3 cut(s)	401, 609, 837
MslI	CAYNNNNRTG	2 cut(s)	585, 654
MspI	CCGG	2 cut(s)	150, 561
MspR9I	CCNGG	2 cut(s)	129, 537
Mva1269I	GAATGC	1 cut(s)	550
MvaI	CCWGG	2 cut(s)	129, 537
MwoI	GCNNNNNNNGC	2 cut(s)	280, 421
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	2 cut(s)	364, 688
NheI	GCTAGC	1 cut(s)	566
NlaIII	CATG	4 cut(s)	317, 377, 480, 584
NlaIV	GGNNCC	6 cut(s)	66, 80, 126, 148, 506, 789
NsbI	TGCGCA	1 cut(s)	284
PagI	TCATGA	1 cut(s)	313
PciSI	GCTCTTC	1 cut(s)	621
PctI	GAATGC	1 cut(s)	550
PfeI	GAWTC	1 cut(s)	707
PkrI	GCNGC	3 cut(s)	187, 273, 777
Psp124BI	GAGCTC	1 cut(s)	351
Psp6I	CCWGG	2 cut(s)	127, 535
PspGI	CCWGG	2 cut(s)	127, 535
PspN4I	GGNNCC	6 cut(s)	66, 80, 126, 148, 506, 789
PspPI	GGNCC	1 cut(s)	504
PsuI	RGATCY	1 cut(s)	688
RsaI	GTAC	6 cut(s)	60, 148, 332, 371, 730, 817
RsaNI	GTAC	6 cut(s)	59, 147, 331, 370, 729, 816
RseI	CAYNNNNRTG	2 cut(s)	585, 654
SacI	GAGCTC	1 cut(s)	351
SapI	GCTCTTC	1 cut(s)	621
SaqAI	TTAA	3 cut(s)	401, 609, 837
SatI	GCNGC	3 cut(s)	186, 272, 776
Sau3AI	GATC	2 cut(s)	364, 688
Sau96I	GGNCC	1 cut(s)	504
ScaI	AGTACT	1 cut(s)	730
ScrFI	CCNGG	2 cut(s)	129, 537
SduI	GDGCHC	2 cut(s)	351, 469
SfaNI	GCATC	3 cut(s)	9, 270, 307
SfcI	CTRYAG	2 cut(s)	98, 711
SinI	GGWCC	1 cut(s)	504
SmiMI	CAYNNNNRTG	2 cut(s)	585, 654
Sse9I	AATT	6 cut(s)	41, 92, 195, 204, 398, 419
SsiI	CCGC	1 cut(s)	473
SspMI	CTAG	2 cut(s)	567, 692
SstI	GAGCTC	1 cut(s)	351
StyD4I	CCNGG	2 cut(s)	127, 535
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	2 cut(s)	58, 121
TasI	AATT	6 cut(s)	41, 92, 195, 204, 398, 419
TatI	WGTACW	2 cut(s)	58, 728
TfiI	GAWTC	1 cut(s)	707
Tru1I	TTAA	3 cut(s)	401, 609, 837
Tru9I	TTAA	3 cut(s)	401, 609, 837
TscAI	CASTG	1 cut(s)	742
TseI	GCWGC	3 cut(s)	185, 271, 775
TspDTI	ATGAA	5 cut(s)	169, 302, 390, 425, 447
TspRI	CASTG	1 cut(s)	742
VpaK11BI	GGWCC	1 cut(s)	504
XapI	RAATTY	1 cut(s)	92
XbaI	TCTAGA	1 cut(s)	691
XspI	CTAG	2 cut(s)	567, 692
ZrmI	AGTACT	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.