Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007554

Physical Location & Seq

Genomic Coordinates Forward (+)

4540738 .. 4549946

Gene Structure 9209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG061200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 338 bp

ATGCTGTTCCGCCCGCTGACTCTGTTTCCATTTCTGGAAGAGCCAGTTGATAAGACAAAGCATTGGGGTGATTTGGAGAGAGAGGAAGAAGAGGAAGAACCGATGGAGGGCAAAGATCTAGAAGATGGTATTGAATCTGTAGATAGCCTTTCAAGTACTCCCACAGGCAATGAGAAACCTGATGTCATTGACCTTCACAAGCAGCAGAGAATTAGGGGCCTGAAAGACCTTTATACCAAGTATGAACAAGCATTCGCAAGGGGGGAGAAGAAGCTGCGAAGTCAGCGAGAGGATCTCAGTGACATGGTTGCGGAGGTGGTGTGTGCCTCTCGGGTGAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

112

Amino Acids

12.98

Weight (kDa)

4.69

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0006921 RchiOBHm_Chr5g0006931 RchiOBHm_Chr5g0007041 RchiOBHm_Chr5g0007191 RchiOBHm_Chr5g0007351
rosa_laevigata	RLG00000031441 RLG00000031449 RLG00000031452
rosa_roxburghii	Rroxscaffold_1G00069130
rosa_rugosa	Rorug04G0425600 Rorug04G0425900 Rorug04G0426200 Rorug04G0426300 Rorug04G0426400
rosa_samantha	Rh5AG053200 Rh5AG053500 Rh5AG053800 Rh5AG054700 Rh5CG060800 Rh5CG061100 Rh5CG061200 Rh5CG061400
rosa_wichuraiana	Rw5G005120 Rw5G005160 Rw5G005530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	10, 14, 311
AclWI	GGATC	1 cut(s)	300
AfaI	GTAC	1 cut(s)	157
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgsI	TTSAA	2 cut(s)	134, 153
AluBI	AGCT	1 cut(s)	274
AluI	AGCT	1 cut(s)	274
AlwI	GGATC	1 cut(s)	300
Ama87I	CYCGRG	1 cut(s)	330
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	2 cut(s)	202, 274
AspS9I	GGNCC	1 cut(s)	217
AsuHPI	GGTGA	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	330
BbvI	GCAGC	2 cut(s)	214, 261
BccI	CCATC	2 cut(s)	97, 119
BfaI	CTAG	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	138
BglII	AGATCT	1 cut(s)	115
BisI	GCNGC	2 cut(s)	203, 275
BlsI	GCNGC	2 cut(s)	204, 276
BmcAI	AGTACT	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	218
BplI	GAGNNNNNCTC	2 cut(s)	279, 311
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	44
Bse3DI	GCAATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	310
BseNI	ACTGG	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	214, 261
BshFI	GGCC	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	330
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmI	GAATGC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	219
BsoBI	CYCGRG	1 cut(s)	330
Bsp143I	GATC	2 cut(s)	115, 292
BspACI	CCGC	3 cut(s)	10, 14, 311
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	1 cut(s)	309
BspLI	GGNNCC	1 cut(s)	218
BspPI	GGATC	1 cut(s)	300
BspQI	GCTCTTC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	44
BssMI	GATC	2 cut(s)	115, 292
Bst6I	CTCTTC	2 cut(s)	33, 84
BstC8I	GCNNGC	1 cut(s)	14
BstDEI	CTNAG	1 cut(s)	296
BstKTI	GATC	2 cut(s)	118, 295
BstMBI	GATC	2 cut(s)	115, 292
BstMWI	GCNNNNNNNGC	1 cut(s)	283
BstSFI	CTRYAG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	214, 261
BstX2I	RGATCY	2 cut(s)	115, 292
BstYI	RGATCY	2 cut(s)	115, 292
BsuRI	GGCC	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	156
CviAII	CATG	1 cut(s)	304
CviJI	RGCY	4 cut(s)	43, 147, 219, 274
CviKI_1	RGCY	4 cut(s)	43, 147, 219, 274
CviQI	GTAC	1 cut(s)	156
DdeI	CTNAG	1 cut(s)	296
DpnI	GATC	2 cut(s)	117, 294
DpnII	GATC	2 cut(s)	115, 292
Eam1104I	CTCTTC	2 cut(s)	33, 84
EarI	CTCTTC	2 cut(s)	33, 84
Eco88I	CYCGRG	1 cut(s)	330
EcoO109I	RGGNCCY	1 cut(s)	217
FaeI	CATG	1 cut(s)	307
FaiI	YATR	3 cut(s)	234, 243, 305
FatI	CATG	1 cut(s)	303
FauI	CCCGC	1 cut(s)	21
Fnu4HI	GCNGC	2 cut(s)	203, 275
Fsp4HI	GCNGC	2 cut(s)	203, 275
FspBI	CTAG	1 cut(s)	119
GluI	GCNGC	2 cut(s)	203, 275
HaeIII	GGCC	1 cut(s)	219
Hin1II	CATG	1 cut(s)	307
HinfI	GANTC	2 cut(s)	19, 134
HphI	GGTGA	1 cut(s)	80
Hpy188III	TCNNGA	2 cut(s)	35, 119
HpyAV	CCTTC	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	283
HpyF3I	CTNAG	1 cut(s)	296
Hsp92II	CATG	1 cut(s)	307
Kzo9I	GATC	2 cut(s)	115, 292
LguI	GCTCTTC	1 cut(s)	33
LpnPI	CCDG	5 cut(s)	20, 57, 150, 192, 233
Lsp1109I	GCAGC	2 cut(s)	214, 261
MaeI	CTAG	1 cut(s)	119
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	2 cut(s)	117, 294
MboI	GATC	2 cut(s)	115, 292
MboII	GAAGA	6 cut(s)	50, 98, 101, 107, 134, 280
MflI	RGATCY	2 cut(s)	115, 292
MluCI	AATT	1 cut(s)	210
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	6 cut(s)	76, 85, 100, 283, 307, 337
MslI	CAYNNNNRTG	1 cut(s)	66
MspA1I	CMGCKG	1 cut(s)	16
Mva1269I	GAATGC	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	283
NdeII	GATC	2 cut(s)	115, 292
NlaIII	CATG	1 cut(s)	307
NlaIV	GGNNCC	1 cut(s)	218
NmuCI	GTSAC	1 cut(s)	299
PciSI	GCTCTTC	1 cut(s)	33
PctI	GAATGC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	204, 276
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	217
PsuI	RGATCY	2 cut(s)	115, 292
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	66
SapI	GCTCTTC	1 cut(s)	33
SatI	GCNGC	2 cut(s)	203, 275
Sau3AI	GATC	2 cut(s)	115, 292
Sau96I	GGNCC	1 cut(s)	217
ScaI	AGTACT	1 cut(s)	157
SchI	GAGTC	1 cut(s)	13
SetI	ASST	5 cut(s)	181, 195, 231, 276, 318
SfcI	CTRYAG	1 cut(s)	138
SmiMI	CAYNNNNRTG	1 cut(s)	66
Sse9I	AATT	1 cut(s)	210
SsiI	CCGC	3 cut(s)	10, 14, 311
SspMI	CTAG	1 cut(s)	119
TasI	AATT	1 cut(s)	210
TatI	WGTACW	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	134
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	2 cut(s)	202, 274
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	1 cut(s)	258
TspRI	CASTG	1 cut(s)	304
XbaI	TCTAGA	1 cut(s)	118
XspI	CTAG	1 cut(s)	119
ZrmI	AGTACT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.