Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007554

Physical Location & Seq

Genomic Coordinates Forward (+)

4524484 .. 4525640

Gene Structure 1157 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28827

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCATAGCCAAGTAAAATTAAGAGAGATGAAGCCAGAATTGCTGTCATATGAACTGAAAGAAGCTCTTGGTATGCCAGATGGTGCTCCTCCGCCATGTCTCATCAAATATGCAGAGATATGGTCCCCCTCATTATATCCACATTTGAAAATCCCTGGACTGAATGCTCCCATCCCCACCGGAGCTAGCTTTGGTAATCATGTAGGTGGCTGTGGAAAGCCTCTGTTTAAGAAGTTTTTTGAAGAAGAGCCAGTTGATAAGACAAAGCATTGGGGTGATTTGGAGAGAGACGAAGAAGAGGGCAAAGATCTAGAAGATGGTGTTGAATCTGTAGATAGCCTTTCAAGTACTCCCACTGGCAATGAGAAACCAGATGTCATTGACCTTCACAAGCAGCAGAGAAAGGAGCCTGAAAGACCTTTATACCAAGTAAGTACGATGGCAGACACTTTCTTTAACGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

154

Amino Acids

17.29

Weight (kDa)

4.96

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSP	PF04046	11 - 56	1.5e-11	PSP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0006921 RchiOBHm_Chr5g0006931 RchiOBHm_Chr5g0007041 RchiOBHm_Chr5g0007191 RchiOBHm_Chr5g0007351
rosa_laevigata	RLG00000031441 RLG00000031449 RLG00000031452
rosa_roxburghii	Rroxscaffold_1G00069130
rosa_rugosa	Rorug04G0425600 Rorug04G0425900 Rorug04G0426200 Rorug04G0426300 Rorug04G0426400
rosa_samantha	Rh5AG053200 Rh5AG053500 Rh5AG053800 Rh5AG054700 Rh5CG060800 Rh5CG061100 Rh5CG061200 Rh5CG061400
rosa_wichuraiana	Rw5G005120 Rw5G005160 Rw5G005530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	92
AfaI	GTAC	2 cut(s)	349, 436
AgsI	TTSAA	4 cut(s)	148, 242, 326, 345
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	3 cut(s)	65, 185, 189
AluI	AGCT	3 cut(s)	65, 185, 189
Alw21I	GWGCWC	1 cut(s)	88
Alw26I	GTCTC	2 cut(s)	104, 282
ApeKI	GCWGC	1 cut(s)	394
AspS9I	GGNCC	1 cut(s)	123
AsuHPI	GGTGA	1 cut(s)	287
AsuNHI	GCTAGC	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	406
BccI	CCATC	4 cut(s)	74, 179, 311, 433
BciT130I	CCWGG	1 cut(s)	156
BcoDI	GTCTC	2 cut(s)	104, 282
BfaI	CTAG	2 cut(s)	186, 311
BfmI	CTRYAG	1 cut(s)	330
BglII	AGATCT	1 cut(s)	307
BisI	GCNGC	1 cut(s)	395
BlsI	GCNGC	1 cut(s)	396
BmcAI	AGTACT	1 cut(s)	349
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	2 cut(s)	125, 408
BmrFI	CCNGG	1 cut(s)	156
BmtI	GCTAGC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	154
BsaWI	WCCGGW	1 cut(s)	179
Bse1I	ACTGG	2 cut(s)	251, 361
Bse3DI	GCAATG	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	1 cut(s)	171
BseMI	GCAATG	1 cut(s)	367
BseNI	ACTGG	2 cut(s)	251, 361
BseRI	GAGGAG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	406
BsiHKAI	GWGCWC	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	109
BsmAI	GTCTC	2 cut(s)	104, 282
BsmBI	CGTCTC	1 cut(s)	282
BsmFI	GGGAC	1 cut(s)	109
BsmI	GAATGC	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	307
BspACI	CCGC	1 cut(s)	92
BspLI	GGNNCC	2 cut(s)	125, 408
BspOI	GCTAGC	1 cut(s)	189
BspQI	GCTCTTC	1 cut(s)	240
BsrDI	GCAATG	1 cut(s)	367
BsrI	ACTGG	2 cut(s)	251, 361
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	1 cut(s)	307
Bst2UI	CCWGG	1 cut(s)	156
Bst6I	CTCTTC	2 cut(s)	240, 291
BstC8I	GCNNGC	1 cut(s)	187
BstF5I	GGATG	1 cut(s)	171
BstKTI	GATC	1 cut(s)	310
BstMAI	GTCTC	2 cut(s)	104, 282
BstMBI	GATC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	406
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	123
Csp6I	GTAC	2 cut(s)	348, 435
CviAII	CATG	2 cut(s)	96, 200
CviQI	GTAC	2 cut(s)	348, 435
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
Eam1104I	CTCTTC	2 cut(s)	240, 291
EarI	CTCTTC	2 cut(s)	240, 291
EciI	GGCGGA	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	154
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	282
FaeI	CATG	2 cut(s)	99, 203
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	2 cut(s)	95, 199
FauNDI	CATATG	1 cut(s)	49
Fnu4HI	GCNGC	1 cut(s)	395
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	395
FspBI	CTAG	2 cut(s)	186, 311
GluI	GCNGC	1 cut(s)	395
HapII	CCGG	1 cut(s)	180
Hin1II	CATG	2 cut(s)	99, 203
HinfI	GANTC	1 cut(s)	326
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	1 cut(s)	287
Hpy188III	TCNNGA	1 cut(s)	311
HpyAV	CCTTC	1 cut(s)	395
HpyCH4V	TGCA	2 cut(s)	4, 113
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
Hsp92II	CATG	2 cut(s)	99, 203
Kzo9I	GATC	1 cut(s)	307
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	4 cut(s)	91, 172, 182, 406
LpnPI	CCDG	9 cut(s)	48, 90, 141, 168, 193, 264, 342, 384, 423
Lsp1109I	GCAGC	1 cut(s)	406
MaeI	CTAG	2 cut(s)	186, 311
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	5 cut(s)	254, 257, 305, 308, 326
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	2 cut(s)	17, 38
MnlI	CCTC	4 cut(s)	99, 139, 231, 292
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	20, 228, 456
MslI	CAYNNNNRTG	2 cut(s)	204, 273
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	156
Mva1269I	GAATGC	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	40
NdeI	CATATG	1 cut(s)	49
NdeII	GATC	1 cut(s)	307
NheI	GCTAGC	1 cut(s)	185
NlaIII	CATG	2 cut(s)	99, 203
NlaIV	GGNNCC	2 cut(s)	125, 408
NsiI	ATGCAT	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	240
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	326
PkrI	GCNGC	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	2 cut(s)	125, 408
PspPI	GGNCC	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	2 cut(s)	349, 436
RsaNI	GTAC	2 cut(s)	348, 435
RseI	CAYNNNNRTG	2 cut(s)	204, 273
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	3 cut(s)	20, 228, 456
SatI	GCNGC	1 cut(s)	395
Sau3AI	GATC	1 cut(s)	307
Sau96I	GGNCC	1 cut(s)	123
ScaI	AGTACT	1 cut(s)	349
ScrFI	CCNGG	1 cut(s)	156
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	6 cut(s)	67, 187, 191, 208, 387, 421
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	1 cut(s)	123
SmiMI	CAYNNNNRTG	2 cut(s)	204, 273
Sse9I	AATT	2 cut(s)	17, 38
SsiI	CCGC	1 cut(s)	92
SspMI	CTAG	2 cut(s)	186, 311
StyD4I	CCNGG	1 cut(s)	154
TasI	AATT	2 cut(s)	17, 38
TatI	WGTACW	1 cut(s)	347
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	3 cut(s)	20, 228, 456
Tru9I	TTAA	3 cut(s)	20, 228, 456
TscAI	CASTG	1 cut(s)	361
TseI	GCWGC	1 cut(s)	394
TspDTI	ATGAA	2 cut(s)	44, 66
TspRI	CASTG	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	123
XbaI	TCTAGA	1 cut(s)	310
XspI	CTAG	2 cut(s)	186, 311
ZrmI	AGTACT	1 cut(s)	349
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.