Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007554

Physical Location & Seq

Genomic Coordinates Forward (+)

4734715 .. 4737104

Gene Structure 2390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG054700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTCCAAGGGTTTTAATCATGCTGGCTGGATTGTTACTACTTCGATTCGATCACCTGATCAGAGGAAAAGAAAGATGAGTCTCACGAACGAAGGAGCCTCAAAGAAGAAGGCTGATTCAGATTCTGAAGAGGATAACAACCTAAAAGAGAAAGGCGTTTCAAACAAAAAGAAAGAGGGTTTTTGTAGTTTTCTGTTCAGGCTAATGCCAATGTGGTCATTCTTTCAGCTTCAACGGCGAATGAAGATTGCAGAATTGAAAAAGCTCTCCTTTTGTTTCTGTCCGTTGCTTTCTGTCCATTTGTATACCTTTGCTATTAAGATTGTTTTTACTGCTTTTCTTTCTGAAATTGTTTCGGAATACTGTACTGGTGCCAAGGCATTGTTAAAACTATGCCTTGAAGAGCCAGTTGATAAGACAAAGCATTGGGGTGATTTGGAGAGAGAGGAAGAAGAGGAAGAACCGATGGAGGGCAAAGATCTAGAAGATGGTATTGAATCTGTAGATAGCCTTTCAAGTACTCCCACTGGCAATGAGAAACCTGATGTCATTGACCTTCACAAGCAGCAGAGAAAGGAGCCTGAAAGACCTTTATACCAATCGAAGAAGAGGAAACGTAAGATGTCATACATGAGAGATCTGAGTTCTATCAAGTTTTGCAAGAAGCCAAGCAGATTACAGGTGACGGTTACAAGAATAGCGGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

236

Amino Acids

27.27

Weight (kDa)

9.24

Isoelectric Point (pI)

57.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0006921 RchiOBHm_Chr5g0006931 RchiOBHm_Chr5g0007041 RchiOBHm_Chr5g0007191 RchiOBHm_Chr5g0007351
rosa_laevigata	RLG00000031441 RLG00000031449 RLG00000031452
rosa_roxburghii	Rroxscaffold_1G00069130
rosa_rugosa	Rorug04G0425600 Rorug04G0425900 Rorug04G0426200 Rorug04G0426300 Rorug04G0426400
rosa_samantha	Rh5AG053200 Rh5AG053500 Rh5AG053800 Rh5AG054700 Rh5CG060800 Rh5CG061100 Rh5CG061200 Rh5CG061400
rosa_wichuraiana	Rw5G005120 Rw5G005160 Rw5G005530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	371
AccI	GTMKAC	1 cut(s)	305
AciI	CCGC	1 cut(s)	701
AcuI	CTGAAG	1 cut(s)	147
AfaI	GTAC	2 cut(s)	367, 520
AfiI	CCNNNNNNNGG	1 cut(s)	470
AgsI	TTSAA	6 cut(s)	162, 233, 259, 401, 497, 516
AluBI	AGCT	2 cut(s)	229, 265
AluI	AGCT	2 cut(s)	229, 265
Alw26I	GTCTC	1 cut(s)	86
AlwNI	CAGNNNCTG	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	565
AsuHPI	GGTGA	3 cut(s)	45, 443, 694
BanI	GGYRCC	1 cut(s)	371
BbvI	GCAGC	1 cut(s)	577
BccI	CCATC	2 cut(s)	460, 482
BceAI	ACGGC	1 cut(s)	251
BclI	TGATCA	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	501
BglII	AGATCT	2 cut(s)	478, 637
BisI	GCNGC	1 cut(s)	566
BlsI	GCNGC	1 cut(s)	567
BmcAI	AGTACT	1 cut(s)	520
BmiI	GGNNCC	3 cut(s)	97, 373, 579
BsaJI	CCNNGG	2 cut(s)	6, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	470
Bse1I	ACTGG	3 cut(s)	373, 407, 532
Bse3DI	GCAATG	1 cut(s)	538
BseDI	CCNNGG	2 cut(s)	6, 375
BseLI	CCNNNNNNNGG	1 cut(s)	470
BseMI	GCAATG	1 cut(s)	538
BseMII	CTCAG	1 cut(s)	632
BseNI	ACTGG	3 cut(s)	373, 407, 532
BseXI	GCAGC	1 cut(s)	577
BshNI	GGYRCC	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	470
BsmAI	GTCTC	1 cut(s)	86
Bsp143I	GATC	4 cut(s)	50, 58, 478, 637
BspACI	CCGC	1 cut(s)	701
BspCNI	CTCAG	1 cut(s)	633
BspLI	GGNNCC	3 cut(s)	97, 373, 579
BspQI	GCTCTTC	1 cut(s)	396
BspT107I	GGYRCC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	538
BsrI	ACTGG	3 cut(s)	373, 407, 532
BssECI	CCNNGG	2 cut(s)	6, 375
BssMI	GATC	4 cut(s)	50, 58, 478, 637
BssNAI	GTATAC	1 cut(s)	306
BssT1I	CCWWGG	2 cut(s)	6, 375
Bst1107I	GTATAC	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	365, 688
Bst6I	CTCTTC	4 cut(s)	123, 396, 447, 602
BstC8I	GCNNGC	1 cut(s)	25
BstDEI	CTNAG	1 cut(s)	641
BstKTI	GATC	4 cut(s)	53, 61, 481, 640
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	4 cut(s)	50, 58, 478, 637
BstMWI	GCNNNNNNNGC	1 cut(s)	235
BstSFI	CTRYAG	1 cut(s)	501
BstV1I	GCAGC	1 cut(s)	577
BstX2I	RGATCY	2 cut(s)	478, 637
BstYI	RGATCY	2 cut(s)	478, 637
BstZ17I	GTATAC	1 cut(s)	306
BtsIMutI	CAGTG	1 cut(s)	525
Cac8I	GCNNGC	1 cut(s)	25
CaiI	CAGNNNCTG	1 cut(s)	125
Csp6I	GTAC	2 cut(s)	366, 519
CviAII	CATG	2 cut(s)	20, 631
CviQI	GTAC	2 cut(s)	366, 519
DdeI	CTNAG	1 cut(s)	641
DpnI	GATC	4 cut(s)	52, 60, 480, 639
DpnII	GATC	4 cut(s)	50, 58, 478, 637
Eam1104I	CTCTTC	4 cut(s)	123, 396, 447, 602
EarI	CTCTTC	4 cut(s)	123, 396, 447, 602
Eco130I	CCWWGG	2 cut(s)	6, 375
Eco57I	CTGAAG	1 cut(s)	147
EcoT14I	CCWWGG	2 cut(s)	6, 375
ErhI	CCWWGG	2 cut(s)	6, 375
FaeI	CATG	2 cut(s)	23, 634
FaiI	YATR	6 cut(s)	21, 306, 394, 595, 628, 632
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FatI	CATG	2 cut(s)	19, 630
FauI	CCCGC	1 cut(s)	694
FbaI	TGATCA	1 cut(s)	58
FblI	GTMKAC	1 cut(s)	305
Fnu4HI	GCNGC	1 cut(s)	566
Fsp4HI	GCNGC	1 cut(s)	566
FspBI	CTAG	1 cut(s)	482
GluI	GCNGC	1 cut(s)	566
Hin1II	CATG	2 cut(s)	23, 634
HinfI	GANTC	5 cut(s)	46, 79, 116, 122, 497
HphI	GGTGA	3 cut(s)	45, 443, 694
Hpy166II	GTNNAC	1 cut(s)	306
Hpy188I	TCNGA	6 cut(s)	63, 121, 127, 346, 358, 642
Hpy188III	TCNNGA	2 cut(s)	85, 482
Hpy8I	GTNNAC	1 cut(s)	306
HpyAV	CCTTC	3 cut(s)	86, 103, 566
HpyCH4III	ACNGT	2 cut(s)	365, 688
HpyCH4IV	ACGT	1 cut(s)	616
HpyCH4V	TGCA	2 cut(s)	251, 660
HpyF10VI	GCNNNNNNNGC	1 cut(s)	235
HpyF3I	CTNAG	1 cut(s)	641
HpySE526I	ACGT	1 cut(s)	616
Hsp92II	CATG	2 cut(s)	23, 634
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	4 cut(s)	50, 58, 478, 637
LguI	GCTCTTC	1 cut(s)	396
LmnI	GCTCC	2 cut(s)	95, 577
Lsp1109I	GCAGC	1 cut(s)	577
MaeI	CTAG	1 cut(s)	482
MaeII	ACGT	1 cut(s)	616
MaeIII	GTNAC	3 cut(s)	34, 682, 688
MalI	GATC	4 cut(s)	52, 60, 480, 639
MboI	GATC	4 cut(s)	50, 58, 478, 637
MflI	RGATCY	2 cut(s)	478, 637
MluCI	AATT	2 cut(s)	254, 348
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	8 cut(s)	57, 109, 124, 169, 439, 448, 463, 603
MseI	TTAA	3 cut(s)	15, 318, 386
MslI	CAYNNNNRTG	1 cut(s)	429
MwoI	GCNNNNNNNGC	1 cut(s)	235
NdeII	GATC	4 cut(s)	50, 58, 478, 637
NlaIII	CATG	2 cut(s)	23, 634
NlaIV	GGNNCC	3 cut(s)	97, 373, 579
NmuCI	GTSAC	1 cut(s)	682
PciSI	GCTCTTC	1 cut(s)	396
PfeI	GAWTC	4 cut(s)	46, 116, 122, 497
PkrI	GCNGC	1 cut(s)	567
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
PspN4I	GGNNCC	3 cut(s)	97, 373, 579
PstNI	CAGNNNCTG	1 cut(s)	125
PsuI	RGATCY	2 cut(s)	478, 637
RsaI	GTAC	2 cut(s)	367, 520
RsaNI	GTAC	2 cut(s)	366, 519
RseI	CAYNNNNRTG	1 cut(s)	429
SapI	GCTCTTC	1 cut(s)	396
SaqAI	TTAA	3 cut(s)	15, 318, 386
SatI	GCNGC	1 cut(s)	566
Sau3AI	GATC	4 cut(s)	50, 58, 478, 637
ScaI	AGTACT	1 cut(s)	520
SchI	GAGTC	1 cut(s)	88
SfcI	CTRYAG	1 cut(s)	501
SmiMI	CAYNNNNRTG	1 cut(s)	429
Sse9I	AATT	2 cut(s)	254, 348
SsiI	CCGC	1 cut(s)	701
SspMI	CTAG	1 cut(s)	482
StyI	CCWWGG	2 cut(s)	6, 375
TaaI	ACNGT	2 cut(s)	365, 688
TaiI	ACGT	1 cut(s)	619
TaqI	TCGA	3 cut(s)	44, 49, 602
TasI	AATT	2 cut(s)	254, 348
TatI	WGTACW	2 cut(s)	365, 518
TfiI	GAWTC	4 cut(s)	46, 116, 122, 497
Tru1I	TTAA	3 cut(s)	15, 318, 386
Tru9I	TTAA	3 cut(s)	15, 318, 386
TscAI	CASTG	1 cut(s)	532
TseFI	GTSAC	1 cut(s)	682
TseI	GCWGC	1 cut(s)	565
Tsp45I	GTSAC	1 cut(s)	682
TspDTI	ATGAA	1 cut(s)	257
TspGWI	ACGGA	1 cut(s)	273
TspRI	CASTG	1 cut(s)	532
XbaI	TCTAGA	1 cut(s)	481
XmiI	GTMKAC	1 cut(s)	305
XspI	CTAG	1 cut(s)	482
ZrmI	AGTACT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.