Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007554

Physical Location & Seq

Genomic Coordinates Forward (+)

5333458 .. 5334787

Gene Structure 1330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031452

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGTCCCCCTCATTATATCCACATTTGAAAATCCCTGGACTGAATGCTCCATCCCCACCGGAGCTAGCTTTGGTAATCATGCAGGTGGCTGTGGAAAGCCTCTGTTTAAGAAGTTTTTTGAAGTGCTCGGCATTTCTATCATATACGTGTTTGGTGTTCAGCAACAAGATCAGCCTAATTATGAGGAAGAGCCAGTTGATAAGACAAAGCATTTGGGTGATTTGGAGAGAGAGGAAGAACCGATGGAGGGCAAAGATCTAGAAGATGGTATTGAATCTGTAGATAGCCTTTCAAGTACTCCCACTGGCAATGAGAAACCTGATGTCATTGACCTTCACAAGCAGCAGAGAAAGGAGCCTGAAAGACCTTTATACCAAGTCAGAAAACATATAAAGTGGATGTTACTACAACCTGAAGAGTTAGAAGCTATGGAGAACGTCTTGCCTGAAAAGTATGAACAAGCAAGAGGGGATAAGAAGCTGCGAAGTCAGCGAGAGGATCTCAGTGACATGGTTGCGGAGGTGGTGTGTGCCTCTCAGAATGAGAAGAAGAGGAAACATAAGATGCCATACATGAGAGATCTGAGTTCTATCAAGTTTTGCAAGAAGCCAAGCAGATTACCGGTGACAGTTACAAGAATAGCGGGAAGTGAACAGTACCAGACGACATTCAGGGATGGATGTAGGCATGTTGGGCAGGGCGTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

237

Amino Acids

27.04

Weight (kDa)

5.78

Isoelectric Point (pI)

52.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0006921 RchiOBHm_Chr5g0006931 RchiOBHm_Chr5g0007041 RchiOBHm_Chr5g0007191 RchiOBHm_Chr5g0007351
rosa_laevigata	RLG00000031441 RLG00000031449 RLG00000031452
rosa_roxburghii	Rroxscaffold_1G00069130
rosa_rugosa	Rorug04G0425600 Rorug04G0425900 Rorug04G0426200 Rorug04G0426300 Rorug04G0426400
rosa_samantha	Rh5AG053200 Rh5AG053500 Rh5AG053800 Rh5AG054700 Rh5CG060800 Rh5CG061100 Rh5CG061200 Rh5CG061400
rosa_wichuraiana	Rw5G005120 Rw5G005160 Rw5G005530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	74
Acc36I	ACCTGC	1 cut(s)	74
AciI	CCGC	2 cut(s)	518, 644
AclWI	GGATC	1 cut(s)	507
AcuI	CTGAAG	1 cut(s)	435
AfaI	GTAC	2 cut(s)	298, 659
AfiI	CCNNNNNNNGG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	147
AgeI	ACCGGT	1 cut(s)	622
AgsI	TTSAA	4 cut(s)	29, 122, 275, 294
AjnI	CCWGG	1 cut(s)	35
AluBI	AGCT	4 cut(s)	65, 69, 428, 481
AluI	AGCT	4 cut(s)	65, 69, 428, 481
Alw21I	GWGCWC	1 cut(s)	129
AlwI	GGATC	1 cut(s)	507
ApeKI	GCWGC	2 cut(s)	343, 481
ArsI	GACNNNNNNTTYG	2 cut(s)	196, 228
AsiGI	ACCGGT	1 cut(s)	622
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	230, 637
AsuNHI	GCTAGC	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	355, 468
BccI	CCATC	4 cut(s)	59, 238, 260, 671
BciT130I	CCWGG	1 cut(s)	37
BfaI	CTAG	2 cut(s)	66, 260
BfmI	CTRYAG	1 cut(s)	279
BfuAI	ACCTGC	1 cut(s)	74
BglII	AGATCT	2 cut(s)	256, 580
BisI	GCNGC	2 cut(s)	344, 482
BlsI	GCNGC	2 cut(s)	345, 483
BmcAI	AGTACT	1 cut(s)	298
Bme1390I	CCNGG	1 cut(s)	37
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	6, 357
BmrFI	CCNGG	1 cut(s)	37
BmsI	GCATC	1 cut(s)	555
BmtI	GCTAGC	1 cut(s)	69
BplI	GAGNNNNNCTC	2 cut(s)	486, 518
BsaAI	YACGTR	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	35
BsaWI	WCCGGW	2 cut(s)	59, 622
BsaXI	ACNNNNNCTCC	2 cut(s)	512, 542
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse118I	RCCGGY	1 cut(s)	622
Bse1I	ACTGG	2 cut(s)	194, 310
Bse3DI	GCAATG	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	37
BseDI	CCNNGG	1 cut(s)	35
BseGI	GGATG	4 cut(s)	51, 405, 682, 686
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMI	GCAATG	1 cut(s)	316
BseMII	CTCAG	3 cut(s)	517, 551, 575
BseNI	ACTGG	2 cut(s)	194, 310
BseXI	GCAGC	2 cut(s)	355, 468
BshTI	ACCGGT	1 cut(s)	622
BsiHKAI	GWGCWC	1 cut(s)	129
BsiSI	CCGG	2 cut(s)	60, 623
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp143I	GATC	4 cut(s)	169, 256, 499, 580
BspACI	CCGC	2 cut(s)	518, 644
BspCNI	CTCAG	3 cut(s)	516, 550, 576
BspLI	GGNNCC	2 cut(s)	6, 357
BspMI	ACCTGC	1 cut(s)	74
BspOI	GCTAGC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	507
BspQI	GCTCTTC	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	316
BsrFI	RCCGGY	1 cut(s)	622
BsrI	ACTGG	2 cut(s)	194, 310
BssAI	RCCGGY	1 cut(s)	622
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	4 cut(s)	169, 256, 499, 580
Bst2UI	CCWGG	1 cut(s)	37
Bst4CI	ACNGT	2 cut(s)	631, 657
Bst6I	CTCTTC	3 cut(s)	183, 411, 545
BstBAI	YACGTR	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	3 cut(s)	503, 537, 584
BstF5I	GGATG	4 cut(s)	51, 405, 682, 686
BstKTI	GATC	4 cut(s)	172, 259, 502, 583
BstMBI	GATC	4 cut(s)	169, 256, 499, 580
BstMWI	GCNNNNNNNGC	2 cut(s)	490, 694
BstNI	CCWGG	1 cut(s)	37
BstNSI	RCATGY	1 cut(s)	692
BstSCI	CCNGG	1 cut(s)	35
BstSFI	CTRYAG	1 cut(s)	279
BstV1I	GCAGC	2 cut(s)	355, 468
BstX2I	RGATCY	3 cut(s)	256, 499, 580
BstYI	RGATCY	3 cut(s)	256, 499, 580
BtsCI	GGATG	4 cut(s)	51, 405, 682, 686
BtsIMutI	CAGTG	2 cut(s)	303, 511
BveI	ACCTGC	1 cut(s)	74
Cac8I	GCNNGC	1 cut(s)	67
Cfr10I	RCCGGY	1 cut(s)	622
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	297, 658
CspAI	ACCGGT	1 cut(s)	622
CviAII	CATG	4 cut(s)	80, 511, 574, 689
CviQI	GTAC	2 cut(s)	297, 658
DdeI	CTNAG	3 cut(s)	503, 537, 584
DpnI	GATC	4 cut(s)	171, 258, 501, 582
DpnII	GATC	4 cut(s)	169, 256, 499, 580
Eam1104I	CTCTTC	3 cut(s)	183, 411, 545
EarI	CTCTTC	3 cut(s)	183, 411, 545
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	435
EcoRII	CCWGG	1 cut(s)	35
FaeI	CATG	4 cut(s)	83, 514, 577, 692
FatI	CATG	4 cut(s)	79, 510, 573, 688
FauI	CCCGC	1 cut(s)	637
Fnu4HI	GCNGC	2 cut(s)	344, 482
FokI	GGATG	4 cut(s)	38, 412, 689, 693
Fsp4HI	GCNGC	2 cut(s)	344, 482
FspBI	CTAG	2 cut(s)	66, 260
GluI	GCNGC	2 cut(s)	344, 482
HapII	CCGG	2 cut(s)	60, 623
Hin1II	CATG	4 cut(s)	83, 514, 577, 692
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	2 cut(s)	60, 623
HphI	GGTGA	2 cut(s)	230, 637
Hpy166II	GTNNAC	1 cut(s)	653
Hpy188I	TCNGA	3 cut(s)	383, 540, 585
Hpy188III	TCNNGA	1 cut(s)	260
Hpy8I	GTNNAC	1 cut(s)	653
HpyAV	CCTTC	1 cut(s)	344
HpyCH4III	ACNGT	2 cut(s)	631, 657
HpyCH4IV	ACGT	2 cut(s)	147, 438
HpyCH4V	TGCA	2 cut(s)	83, 603
HpyF10VI	GCNNNNNNNGC	2 cut(s)	490, 694
HpyF3I	CTNAG	3 cut(s)	503, 537, 584
HpySE526I	ACGT	2 cut(s)	147, 438
Hsp92II	CATG	4 cut(s)	83, 514, 577, 692
Kzo9I	GATC	4 cut(s)	169, 256, 499, 580
LguI	GCTCTTC	1 cut(s)	183
LmnI	GCTCC	3 cut(s)	53, 62, 355
Lsp1109I	GCAGC	2 cut(s)	355, 468
LweI	GCATC	1 cut(s)	555
MaeI	CTAG	2 cut(s)	66, 260
MaeII	ACGT	2 cut(s)	147, 438
MaeIII	GTNAC	4 cut(s)	402, 506, 625, 631
MalI	GATC	4 cut(s)	171, 258, 501, 582
MboI	GATC	4 cut(s)	169, 256, 499, 580
MboII	GAAGA	6 cut(s)	200, 248, 275, 428, 559, 562
MflI	RGATCY	3 cut(s)	256, 499, 580
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	1 cut(s)	178
MseI	TTAA	1 cut(s)	108
MslI	CAYNNNNRTG	3 cut(s)	84, 146, 216
MspI	CCGG	2 cut(s)	60, 623
MspR9I	CCNGG	1 cut(s)	37
Mva1269I	GAATGC	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	37
MwoI	GCNNNNNNNGC	2 cut(s)	490, 694
NdeII	GATC	4 cut(s)	169, 256, 499, 580
NheI	GCTAGC	1 cut(s)	65
NlaIII	CATG	4 cut(s)	83, 514, 577, 692
NlaIV	GGNNCC	2 cut(s)	6, 357
NmeAIII	GCCGAG	1 cut(s)	108
NmuCI	GTSAC	2 cut(s)	506, 625
NspI	RCATGY	1 cut(s)	692
PaqCI	CACCTGC	1 cut(s)	74
PciSI	GCTCTTC	1 cut(s)	183
PctI	GAATGC	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	275
PinAI	ACCGGT	1 cut(s)	622
PkrI	GCNGC	2 cut(s)	345, 483
Ppu21I	YACGTR	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	35
PspGI	CCWGG	1 cut(s)	35
PspN4I	GGNNCC	2 cut(s)	6, 357
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	3 cut(s)	256, 499, 580
RsaI	GTAC	2 cut(s)	298, 659
RsaNI	GTAC	2 cut(s)	297, 658
RseI	CAYNNNNRTG	3 cut(s)	84, 146, 216
SapI	GCTCTTC	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	2 cut(s)	344, 482
Sau3AI	GATC	4 cut(s)	169, 256, 499, 580
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	298
ScrFI	CCNGG	1 cut(s)	37
SduI	GDGCHC	1 cut(s)	129
SfaNI	GCATC	1 cut(s)	555
SfcI	CTRYAG	1 cut(s)	279
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	3 cut(s)	84, 146, 216
Sse9I	AATT	1 cut(s)	178
SsiI	CCGC	2 cut(s)	518, 644
SspMI	CTAG	2 cut(s)	66, 260
StyD4I	CCNGG	1 cut(s)	35
TaaI	ACNGT	2 cut(s)	631, 657
TaiI	ACGT	2 cut(s)	150, 441
TasI	AATT	1 cut(s)	178
TatI	WGTACW	1 cut(s)	296
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	2 cut(s)	310, 511
TseFI	GTSAC	2 cut(s)	506, 625
TseI	GCWGC	2 cut(s)	343, 481
Tsp45I	GTSAC	2 cut(s)	506, 625
TspDTI	ATGAA	1 cut(s)	471
TspRI	CASTG	2 cut(s)	310, 511
VpaK11BI	GGWCC	1 cut(s)	4
XbaI	TCTAGA	1 cut(s)	259
XceI	RCATGY	1 cut(s)	692
XspI	CTAG	2 cut(s)	66, 260
ZrmI	AGTACT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.