Rw5G005120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0007554
Physical Location & Seq
Reverse (-)
5372385 .. 5375479
3095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G005120.1

Sequence Viewer

Length: 339 bp
ATGAGGCCCACCCAGGCCATGCCAGCTGGTTCTTCTCGATTAAGTTCCTACAATGAAAACCAACAAAGTTCCTTAAAATTGACTGTTGGAGGGGAGGAGAAAAACCGGAAAGCTTCTCAGGCCACCGCCGGCGACGTCACCGTCGTTCGCTTGCTTTGTGTGGTCTATACTCTGTATGTAGCTGCTAGTGAAGTAATGAAAACGAATGTCCAAGGGAGGAAAAGAAAGATGAGTCTCACGAACGAAGGAGCCTCAAAGAAGAAGGCTGATTCAGATTCTGAAGAGGATAACAACCTAAAAGAGAAAGGCGTTTCAAACAAAAAGAAAGCTCAACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.24

Weight (kDa)

9.85

Isoelectric Point (pI)

45.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 140
AatII GACGTC 1 cut(s) 138
AciI CCGC 1 cut(s) 126
AcuI CTGAAG 1 cut(s) 300
AcyI GRCGYC 1 cut(s) 135
AgsI TTSAA 1 cut(s) 315
AjnI CCWGG 1 cut(s) 12
AluBI AGCT 4 cut(s) 26, 113, 182, 329
AluI AGCT 4 cut(s) 26, 113, 182, 329
Alw26I GTCTC 1 cut(s) 239
AlwNI CAGNNNCTG 1 cut(s) 278
AoxI GGCC 3 cut(s) 5, 15, 120
ApeKI GCWGC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 130
BbvI GCAGC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 239
BfaI CTAG 1 cut(s) 186
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 6
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 14
BsaHI GRCGYC 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 12, 211
BsaWI WCCGGW 1 cut(s) 105
Bse118I RCCGGY 1 cut(s) 128
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 2 cut(s) 12, 211
BseMII CTCAG 1 cut(s) 131
BseRI GAGGAG 1 cut(s) 110
BseXI GCAGC 1 cut(s) 169
BshFI GGCC 3 cut(s) 7, 17, 122
BsiSI CCGG 2 cut(s) 106, 129
BsmAI GTCTC 1 cut(s) 239
BsnI GGCC 3 cut(s) 7, 17, 122
BspACI CCGC 1 cut(s) 126
BspANI GGCC 3 cut(s) 7, 17, 122
BspCNI CTCAG 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 250
BsrFI RCCGGY 1 cut(s) 128
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 12, 211
BssNI GRCGYC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 14
Bst4CI ACNGT 3 cut(s) 85, 142, 336
Bst6I CTCTTC 1 cut(s) 276
BstACI GRCGYC 1 cut(s) 135
BstC8I GCNNGC 3 cut(s) 24, 130, 152
BstDEI CTNAG 1 cut(s) 117
BstMAI GTCTC 1 cut(s) 239
BstMWI GCNNNNNNNGC 2 cut(s) 23, 119
BstNI CCWGG 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 169
BsuRI GGCC 3 cut(s) 7, 17, 122
Cac8I GCNNGC 3 cut(s) 24, 130, 152
CaiI CAGNNNCTG 1 cut(s) 278
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 6
CviAII CATG 1 cut(s) 19
CviJI RGCY 9 cut(s) 7, 17, 26, 113, 122, 182, 251, 266, 329
CviKI_1 RGCY 9 cut(s) 7, 17, 26, 113, 122, 182, 251, 266, 329
DdeI CTNAG 1 cut(s) 117
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco130I CCWWGG 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 300
EcoRII CCWGG 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 211
FaeI CATG 1 cut(s) 22
FaiI YATR 3 cut(s) 20, 168, 177
FatI CATG 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 1 cut(s) 186
GluI GCNGC 1 cut(s) 183
HaeIII GGCC 3 cut(s) 7, 17, 122
HapII CCGG 2 cut(s) 106, 129
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 1 cut(s) 22
HindIII AAGCTT 1 cut(s) 111
HinfI GANTC 3 cut(s) 232, 269, 275
HpaII CCGG 2 cut(s) 106, 129
HphI GGTGA 1 cut(s) 130
Hpy188I TCNGA 2 cut(s) 274, 280
Hpy188III TCNNGA 2 cut(s) 36, 238
Hpy99I CGWCG 2 cut(s) 137, 146
HpyAV CCTTC 2 cut(s) 239, 256
HpyCH4III ACNGT 3 cut(s) 85, 142, 336
HpyCH4IV ACGT 1 cut(s) 135
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 119
HpyF3I CTNAG 1 cut(s) 117
HpySE526I ACGT 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 1 cut(s) 22
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 6 cut(s) 12, 26, 36, 104, 119, 142
Lsp1109I GCAGC 1 cut(s) 169
MaeI CTAG 1 cut(s) 186
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 136
MboII GAAGA 3 cut(s) 24, 271, 293
MluCI AATT 1 cut(s) 77
MlyI GAGTC 1 cut(s) 241
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 5 cut(s) 83, 88, 210, 262, 277
MreI CGCCGGCG 1 cut(s) 128
MroNI GCCGGC 1 cut(s) 128
MseI TTAA 2 cut(s) 41, 74
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 2 cut(s) 106, 129
MspR9I CCNGG 1 cut(s) 14
MvaI CCWGG 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 23, 119
NaeI GCCGGC 1 cut(s) 130
NgoMIV GCCGGC 1 cut(s) 128
NlaIII CATG 1 cut(s) 22
NlaIV GGNNCC 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 136
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PdiI GCCGGC 1 cut(s) 130
PfeI GAWTC 2 cut(s) 269, 275
PkrI GCNGC 1 cut(s) 184
PleI GAGTC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 250
PspPI GGNCC 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 278
PvuII CAGCTG 1 cut(s) 26
SaqAI TTAA 2 cut(s) 41, 74
SatI GCNGC 1 cut(s) 183
Sau96I GGNCC 1 cut(s) 6
SchI GAGTC 1 cut(s) 241
ScrFI CCNGG 1 cut(s) 14
SetI ASST 6 cut(s) 28, 115, 138, 184, 297, 331
SgrAI CRCCGGYG 1 cut(s) 128
Sse9I AATT 1 cut(s) 77
SsiI CCGC 1 cut(s) 126
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 1 cut(s) 12
StyI CCWWGG 1 cut(s) 211
TaaI ACNGT 3 cut(s) 85, 142, 336
TaiI ACGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 37
TasI AATT 1 cut(s) 77
TfiI GAWTC 2 cut(s) 269, 275
Tru1I TTAA 2 cut(s) 41, 74
Tru9I TTAA 2 cut(s) 41, 74
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 2 cut(s) 69, 212
XspI CTAG 1 cut(s) 186
ZraI GACGTC 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.