Splicing factor 3B subunit
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0006921 RchiOBHm_Chr5g0006931 RchiOBHm_Chr5g0007041 RchiOBHm_Chr5g0007191 RchiOBHm_Chr5g0007351 |
| rosa_laevigata | RLG00000031441 RLG00000031449 RLG00000031452 |
| rosa_roxburghii | Rroxscaffold_1G00069130 |
| rosa_rugosa | Rorug04G0425600 Rorug04G0425900 Rorug04G0426200 Rorug04G0426300 Rorug04G0426400 |
| rosa_samantha | Rh5AG053200 Rh5AG053500 Rh5AG053800 Rh5AG054700 Rh5CG060800 Rh5CG061100 Rh5CG061200 Rh5CG061400 |
| rosa_wichuraiana | Rw5G005120 Rw5G005160 Rw5G005530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 283 |
| Acc36I | ACCTGC | 1 cut(s) | 283 |
| Acc65I | GGTACC | 1 cut(s) | 506 |
| AccB1I | GGYRCC | 3 cut(s) | 457, 471, 506 |
| AccII | CGCG | 2 cut(s) | 113, 245 |
| AcoI | YGGCCR | 2 cut(s) | 251, 258 |
| AcsI | RAATTY | 1 cut(s) | 485 |
| AcuI | CTGAAG | 3 cut(s) | 132, 174, 1242 |
| AcyI | GRCGYC | 1 cut(s) | 57 |
| AdeI | CACNNNGTG | 1 cut(s) | 722 |
| AfaI | GTAC | 6 cut(s) | 209, 453, 508, 692, 731, 1105 |
| AfeI | AGCGCT | 1 cut(s) | 318 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 67, 249, 366, 641, 1055 |
| AgeI | ACCGGT | 1 cut(s) | 1048 |
| AgsI | TTSAA | 8 cut(s) | 365, 391, 584, 688, 889, 983, 1082, 1101 |
| AjnI | CCWGG | 3 cut(s) | 37, 325, 895 |
| Alw21I | GWGCWC | 3 cut(s) | 86, 711, 829 |
| Alw26I | GTCTC | 1 cut(s) | 845 |
| Aor51HI | AGCGCT | 1 cut(s) | 318 |
| AoxI | GGCC | 2 cut(s) | 251, 258 |
| ApeKI | GCWGC | 5 cut(s) | 173, 319, 631, 1150, 1288 |
| ApoI | RAATTY | 1 cut(s) | 485 |
| AsiGI | ACCGGT | 1 cut(s) | 1048 |
| Asp718I | GGTACC | 1 cut(s) | 506 |
| AspLEI | GCGC | 1 cut(s) | 319 |
| AspS9I | GGNCC | 1 cut(s) | 864 |
| AsuHPI | GGTGA | 3 cut(s) | 78, 734, 1028 |
| AsuNHI | GCTAGC | 2 cut(s) | 313, 926 |
| AvaII | GGWCC | 1 cut(s) | 864 |
| BalI | TGGCCA | 2 cut(s) | 253, 260 |
| BanI | GGYRCC | 3 cut(s) | 457, 471, 506 |
| BanII | GRGCYC | 2 cut(s) | 86, 711 |
| BbsI | GAAGAC | 1 cut(s) | 608 |
| Bbv12I | GWGCWC | 3 cut(s) | 86, 711, 829 |
| BbvI | GCAGC | 5 cut(s) | 160, 306, 643, 1162, 1275 |
| BccI | CCATC | 5 cut(s) | 310, 634, 815, 920, 1067 |
| BceAI | ACGGC | 2 cut(s) | 268, 383 |
| BciT130I | CCWGG | 3 cut(s) | 39, 327, 897 |
| BcoDI | GTCTC | 1 cut(s) | 845 |
| BfaI | CTAG | 3 cut(s) | 314, 927, 1067 |
| BfmI | CTRYAG | 2 cut(s) | 491, 1086 |
| BfoI | RGCGCY | 1 cut(s) | 320 |
| BfuAI | ACCTGC | 1 cut(s) | 283 |
| BglII | AGATCT | 2 cut(s) | 1063, 1172 |
| BisI | GCNGC | 9 cut(s) | 114, 174, 240, 243, 320, 323, 632, 1151, 1289 |
| BlsI | GCNGC | 9 cut(s) | 115, 175, 241, 244, 321, 324, 633, 1152, 1290 |
| BmcAI | AGTACT | 1 cut(s) | 1105 |
| Bme1390I | CCNGG | 3 cut(s) | 39, 327, 897 |
| Bme18I | GGWCC | 1 cut(s) | 864 |
| BmgT120I | GGNCC | 1 cut(s) | 864 |
| BmiI | GGNNCC | 5 cut(s) | 459, 473, 508, 866, 1164 |
| BmrFI | CCNGG | 3 cut(s) | 39, 327, 897 |
| BmsI | GCATC | 2 cut(s) | 402, 667 |
| BmtI | GCTAGC | 2 cut(s) | 317, 930 |
| BpiI | GAAGAC | 1 cut(s) | 608 |
| BsaHI | GRCGYC | 1 cut(s) | 57 |
| BsaJI | CCNNGG | 4 cut(s) | 37, 326, 461, 895 |
| BsaWI | WCCGGW | 3 cut(s) | 509, 920, 1048 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 67, 249, 366, 641, 1055 |
| Bse118I | RCCGGY | 1 cut(s) | 1048 |
| Bse1I | ACTGG | 5 cut(s) | 261, 459, 556, 992, 1117 |
| Bse3DI | GCAATG | 2 cut(s) | 540, 1123 |
| BseBI | CCWGG | 3 cut(s) | 39, 327, 897 |
| BseDI | CCNNGG | 4 cut(s) | 37, 326, 461, 895 |
| BseGI | GGATG | 4 cut(s) | 305, 417, 912, 1212 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 67, 249, 366, 641, 1055 |
| BseMI | GCAATG | 2 cut(s) | 540, 1123 |
| BseNI | ACTGG | 5 cut(s) | 261, 459, 556, 992, 1117 |
| BseRI | GAGGAG | 2 cut(s) | 13, 819 |
| BseXI | GCAGC | 5 cut(s) | 160, 306, 643, 1162, 1275 |
| BseYI | CCCAGC | 1 cut(s) | 211 |
| Bsh1236I | CGCG | 2 cut(s) | 113, 245 |
| Bsh1285I | CGRYCG | 1 cut(s) | 291 |
| BshFI | GGCC | 2 cut(s) | 253, 260 |
| BshNI | GGYRCC | 3 cut(s) | 457, 471, 506 |
| BshTI | ACCGGT | 1 cut(s) | 1048 |
| BsiEI | CGRYCG | 1 cut(s) | 291 |
| BsiHKAI | GWGCWC | 3 cut(s) | 86, 711, 829 |
| BsiSI | CCGG | 3 cut(s) | 510, 921, 1049 |
| BslFI | GGGAC | 2 cut(s) | 177, 850 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 67, 249, 366, 641, 1055 |
| BsmAI | GTCTC | 1 cut(s) | 845 |
| BsmFI | GGGAC | 2 cut(s) | 177, 850 |
| BsmI | GAATGC | 1 cut(s) | 910 |
| BsnI | GGCC | 2 cut(s) | 253, 260 |
| Bsp1286I | GDGCHC | 3 cut(s) | 86, 711, 829 |
| Bsp143I | GATC | 5 cut(s) | 246, 288, 724, 1063, 1172 |
| BspANI | GGCC | 2 cut(s) | 253, 260 |
| BspFNI | CGCG | 2 cut(s) | 113, 245 |
| BspHI | TCATGA | 1 cut(s) | 673 |
| BspLI | GGNNCC | 5 cut(s) | 459, 473, 508, 866, 1164 |
| BspMI | ACCTGC | 1 cut(s) | 283 |
| BspOI | GCTAGC | 2 cut(s) | 317, 930 |
| BspQI | GCTCTTC | 2 cut(s) | 150, 981 |
| BspT107I | GGYRCC | 3 cut(s) | 457, 471, 506 |
| BsrDI | GCAATG | 2 cut(s) | 540, 1123 |
| BsrFI | RCCGGY | 1 cut(s) | 1048 |
| BsrI | ACTGG | 5 cut(s) | 261, 459, 556, 992, 1117 |
| BssAI | RCCGGY | 1 cut(s) | 1048 |
| BssECI | CCNNGG | 4 cut(s) | 37, 326, 461, 895 |
| BssMI | GATC | 5 cut(s) | 246, 288, 724, 1063, 1172 |
| BssNI | GRCGYC | 1 cut(s) | 57 |
| BssT1I | CCWWGG | 1 cut(s) | 461 |
| Bst2UI | CCWGG | 3 cut(s) | 39, 327, 897 |
| Bst4CI | ACNGT | 2 cut(s) | 451, 522 |
| Bst6I | CTCTTC | 6 cut(s) | 31, 150, 326, 981, 1032, 1218 |
| BstACI | GRCGYC | 1 cut(s) | 57 |
| BstC8I | GCNNGC | 3 cut(s) | 118, 315, 928 |
| BstF5I | GGATG | 4 cut(s) | 305, 417, 912, 1212 |
| BstFNI | CGCG | 2 cut(s) | 113, 245 |
| BstH2I | RGCGCY | 1 cut(s) | 320 |
| BstHHI | GCGC | 1 cut(s) | 319 |
| BstKTI | GATC | 5 cut(s) | 249, 291, 727, 1066, 1175 |
| BstMAI | GTCTC | 1 cut(s) | 845 |
| BstMBI | GATC | 5 cut(s) | 246, 288, 724, 1063, 1172 |
| BstMCI | CGRYCG | 1 cut(s) | 291 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 90, 182, 319, 781, 1297 |
| BstNI | CCWGG | 3 cut(s) | 39, 327, 897 |
| BstSCI | CCNGG | 3 cut(s) | 37, 325, 895 |
| BstSFI | CTRYAG | 2 cut(s) | 491, 1086 |
| BstUI | CGCG | 2 cut(s) | 113, 245 |
| BstV1I | GCAGC | 5 cut(s) | 160, 306, 643, 1162, 1275 |
| BstV2I | GAAGAC | 1 cut(s) | 608 |
| BstX2I | RGATCY | 2 cut(s) | 1063, 1172 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 468 |
| BstYI | RGATCY | 2 cut(s) | 1063, 1172 |
| BsuRI | GGCC | 2 cut(s) | 253, 260 |
| BtsCI | GGATG | 4 cut(s) | 305, 417, 912, 1212 |
| BtsIMutI | CAGTG | 3 cut(s) | 254, 1110, 1318 |
| BveI | ACCTGC | 1 cut(s) | 283 |
| Cac8I | GCNNGC | 3 cut(s) | 118, 315, 928 |
| CciI | TCATGA | 1 cut(s) | 673 |
| CfoI | GCGC | 1 cut(s) | 319 |
| Cfr10I | RCCGGY | 1 cut(s) | 1048 |
| Cfr13I | GGNCC | 1 cut(s) | 864 |
| CseI | GACGC | 2 cut(s) | 65, 267 |
| Csp6I | GTAC | 6 cut(s) | 208, 452, 507, 691, 730, 1104 |
| CspAI | ACCGGT | 1 cut(s) | 1048 |
| CviAII | CATG | 5 cut(s) | 674, 734, 837, 941, 1318 |
| CviQI | GTAC | 6 cut(s) | 208, 452, 507, 691, 730, 1104 |
| DpnI | GATC | 5 cut(s) | 248, 290, 726, 1065, 1174 |
| DpnII | GATC | 5 cut(s) | 246, 288, 724, 1063, 1172 |
| DraIII | CACNNNGTG | 1 cut(s) | 722 |
| EaeI | YGGCCR | 2 cut(s) | 251, 258 |
| Eam1104I | CTCTTC | 6 cut(s) | 31, 150, 326, 981, 1032, 1218 |
| EarI | CTCTTC | 6 cut(s) | 31, 150, 326, 981, 1032, 1218 |
| EciI | GGCGGA | 2 cut(s) | 172, 822 |
| Ecl136II | GAGCTC | 2 cut(s) | 84, 709 |
| Eco130I | CCWWGG | 1 cut(s) | 461 |
| Eco24I | GRGCYC | 2 cut(s) | 86, 711 |
| Eco47I | GGWCC | 1 cut(s) | 864 |
| Eco47III | AGCGCT | 1 cut(s) | 318 |
| Eco53kI | GAGCTC | 2 cut(s) | 84, 709 |
| Eco57I | CTGAAG | 3 cut(s) | 132, 174, 1242 |
| EcoICRI | GAGCTC | 2 cut(s) | 84, 709 |
| EcoRII | CCWGG | 3 cut(s) | 37, 325, 895 |
| EcoT14I | CCWWGG | 1 cut(s) | 461 |
| EcoT38I | GRGCYC | 2 cut(s) | 86, 711 |
| ErhI | CCWWGG | 1 cut(s) | 461 |
| FaeI | CATG | 5 cut(s) | 677, 737, 840, 944, 1321 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 792, 824 |
| FaqI | GGGAC | 2 cut(s) | 177, 850 |
| FatI | CATG | 5 cut(s) | 673, 733, 836, 940, 1317 |
| FauNDI | CATATG | 1 cut(s) | 790 |
| Fnu4HI | GCNGC | 9 cut(s) | 114, 174, 240, 243, 320, 323, 632, 1151, 1289 |
| FokI | GGATG | 4 cut(s) | 292, 424, 899, 1219 |
| FriOI | GRGCYC | 2 cut(s) | 86, 711 |
| Fsp4HI | GCNGC | 9 cut(s) | 114, 174, 240, 243, 320, 323, 632, 1151, 1289 |
| FspBI | CTAG | 3 cut(s) | 314, 927, 1067 |
| GlaI | GCGC | 1 cut(s) | 318 |
| GluI | GCNGC | 9 cut(s) | 114, 174, 240, 243, 320, 323, 632, 1151, 1289 |
| GsaI | CCCAGC | 1 cut(s) | 215 |
| HaeII | RGCGCY | 1 cut(s) | 320 |
| HaeIII | GGCC | 2 cut(s) | 253, 260 |
| HapII | CCGG | 3 cut(s) | 510, 921, 1049 |
| HgaI | GACGC | 2 cut(s) | 65, 267 |
| HhaI | GCGC | 1 cut(s) | 319 |
| Hin1I | GRCGYC | 1 cut(s) | 57 |
| Hin1II | CATG | 5 cut(s) | 677, 737, 840, 944, 1321 |
| Hin6I | GCGC | 1 cut(s) | 317 |
| HinP1I | GCGC | 1 cut(s) | 317 |
| HinfI | GANTC | 1 cut(s) | 1082 |
| HpaII | CCGG | 3 cut(s) | 510, 921, 1049 |
| HphI | GGTGA | 3 cut(s) | 78, 734, 1028 |
| Hpy166II | GTNNAC | 1 cut(s) | 348 |
| Hpy188I | TCNGA | 3 cut(s) | 432, 444, 1190 |
| Hpy188III | TCNNGA | 3 cut(s) | 533, 674, 1067 |
| Hpy8I | GTNNAC | 1 cut(s) | 348 |
| Hpy99I | CGWCG | 3 cut(s) | 52, 283, 289 |
| HpyAV | CCTTC | 5 cut(s) | 40, 156, 332, 371, 731 |
| HpyCH4III | ACNGT | 2 cut(s) | 451, 522 |
| HpyCH4IV | ACGT | 2 cut(s) | 190, 1245 |
| HpyCH4V | TGCA | 7 cut(s) | 93, 176, 383, 415, 616, 631, 854 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 90, 182, 319, 781, 1297 |
| HpySE526I | ACGT | 2 cut(s) | 190, 1245 |
| Hsp92I | GRCGYC | 1 cut(s) | 57 |
| Hsp92II | CATG | 5 cut(s) | 677, 737, 840, 944, 1321 |
| HspAI | GCGC | 1 cut(s) | 317 |
| KpnI | GGTACC | 1 cut(s) | 510 |
| Kzo9I | GATC | 5 cut(s) | 246, 288, 724, 1063, 1172 |
| LguI | GCTCTTC | 2 cut(s) | 150, 981 |
| LmnI | GCTCC | 5 cut(s) | 272, 832, 913, 923, 1162 |
| Lsp1109I | GCAGC | 5 cut(s) | 160, 306, 643, 1162, 1275 |
| LweI | GCATC | 2 cut(s) | 402, 667 |
| MaeI | CTAG | 3 cut(s) | 314, 927, 1067 |
| MaeII | ACGT | 2 cut(s) | 190, 1245 |
| MaeIII | GTNAC | 2 cut(s) | 1209, 1313 |
| MalI | GATC | 5 cut(s) | 248, 290, 726, 1065, 1174 |
| MboI | GATC | 5 cut(s) | 246, 288, 724, 1063, 1172 |
| MflI | RGATCY | 2 cut(s) | 1063, 1172 |
| MhlI | GDGCHC | 3 cut(s) | 86, 711, 829 |
| MlsI | TGGCCA | 2 cut(s) | 253, 260 |
| MluCI | AATT | 8 cut(s) | 386, 434, 485, 555, 564, 758, 779, 1357 |
| MluNI | TGGCCA | 2 cut(s) | 253, 260 |
| Mox20I | TGGCCA | 2 cut(s) | 253, 260 |
| MscI | TGGCCA | 2 cut(s) | 253, 260 |
| MseI | TTAA | 4 cut(s) | 761, 846, 969, 1360 |
| MslI | CAYNNNNRTG | 2 cut(s) | 945, 1014 |
| Msp20I | TGGCCA | 2 cut(s) | 253, 260 |
| MspA1I | CMGCKG | 2 cut(s) | 152, 173 |
| MspI | CCGG | 3 cut(s) | 510, 921, 1049 |
| MspR9I | CCNGG | 3 cut(s) | 39, 327, 897 |
| Mva1269I | GAATGC | 1 cut(s) | 910 |
| MvaI | CCWGG | 3 cut(s) | 39, 327, 897 |
| MvnI | CGCG | 2 cut(s) | 113, 245 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 90, 182, 319, 781, 1297 |
| NdeI | CATATG | 1 cut(s) | 790 |
| NdeII | GATC | 5 cut(s) | 246, 288, 724, 1063, 1172 |
| NheI | GCTAGC | 2 cut(s) | 313, 926 |
| NlaIII | CATG | 5 cut(s) | 677, 737, 840, 944, 1321 |
| NlaIV | GGNNCC | 5 cut(s) | 459, 473, 508, 866, 1164 |
| NmuCI | GTSAC | 1 cut(s) | 1313 |
| PagI | TCATGA | 1 cut(s) | 673 |
| PaqCI | CACCTGC | 1 cut(s) | 283 |
| PciSI | GCTCTTC | 2 cut(s) | 150, 981 |
| PctI | GAATGC | 1 cut(s) | 910 |
| PfeI | GAWTC | 1 cut(s) | 1082 |
| PinAI | ACCGGT | 1 cut(s) | 1048 |
| PkrI | GCNGC | 9 cut(s) | 115, 175, 241, 244, 321, 324, 633, 1152, 1290 |
| Ple19I | CGATCG | 1 cut(s) | 291 |
| Psp124BI | GAGCTC | 2 cut(s) | 86, 711 |
| Psp6I | CCWGG | 3 cut(s) | 37, 325, 895 |
| PspFI | CCCAGC | 1 cut(s) | 211 |
| PspGI | CCWGG | 3 cut(s) | 37, 325, 895 |
| PspN4I | GGNNCC | 5 cut(s) | 459, 473, 508, 866, 1164 |
| PspPI | GGNCC | 1 cut(s) | 864 |
| PsuI | RGATCY | 2 cut(s) | 1063, 1172 |
| PvuI | CGATCG | 1 cut(s) | 291 |
| PvuII | CAGCTG | 1 cut(s) | 152 |
| RsaI | GTAC | 6 cut(s) | 209, 453, 508, 692, 731, 1105 |
| RsaNI | GTAC | 6 cut(s) | 208, 452, 507, 691, 730, 1104 |
| RseI | CAYNNNNRTG | 2 cut(s) | 945, 1014 |
| SacI | GAGCTC | 2 cut(s) | 86, 711 |
| SapI | GCTCTTC | 2 cut(s) | 150, 981 |
| SaqAI | TTAA | 4 cut(s) | 761, 846, 969, 1360 |
| SatI | GCNGC | 9 cut(s) | 114, 174, 240, 243, 320, 323, 632, 1151, 1289 |
| Sau3AI | GATC | 5 cut(s) | 246, 288, 724, 1063, 1172 |
| Sau96I | GGNCC | 1 cut(s) | 864 |
| ScaI | AGTACT | 1 cut(s) | 1105 |
| ScrFI | CCNGG | 3 cut(s) | 39, 327, 897 |
| SduI | GDGCHC | 3 cut(s) | 86, 711, 829 |
| SfaNI | GCATC | 2 cut(s) | 402, 667 |
| SfcI | CTRYAG | 2 cut(s) | 491, 1086 |
| SinI | GGWCC | 1 cut(s) | 864 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 945, 1014 |
| Sse9I | AATT | 8 cut(s) | 386, 434, 485, 555, 564, 758, 779, 1357 |
| SspMI | CTAG | 3 cut(s) | 314, 927, 1067 |
| SstI | GAGCTC | 2 cut(s) | 86, 711 |
| StyD4I | CCNGG | 3 cut(s) | 37, 325, 895 |
| StyI | CCWWGG | 1 cut(s) | 461 |
| TaaI | ACNGT | 2 cut(s) | 451, 522 |
| TaiI | ACGT | 2 cut(s) | 193, 1248 |
| TaqI | TCGA | 2 cut(s) | 80, 287 |
| TasI | AATT | 8 cut(s) | 386, 434, 485, 555, 564, 758, 779, 1357 |
| TatI | WGTACW | 2 cut(s) | 451, 1103 |
| TauI | GCSGC | 4 cut(s) | 116, 242, 245, 325 |
| TfiI | GAWTC | 1 cut(s) | 1082 |
| Tru1I | TTAA | 4 cut(s) | 761, 846, 969, 1360 |
| Tru9I | TTAA | 4 cut(s) | 761, 846, 969, 1360 |
| TscAI | CASTG | 3 cut(s) | 261, 1117, 1318 |
| TseFI | GTSAC | 1 cut(s) | 1313 |
| TseI | GCWGC | 5 cut(s) | 173, 319, 631, 1150, 1288 |
| Tsp45I | GTSAC | 1 cut(s) | 1313 |
| TspDTI | ATGAA | 8 cut(s) | 17, 389, 529, 662, 750, 785, 807, 1278 |
| TspRI | CASTG | 3 cut(s) | 261, 1117, 1318 |
| VpaK11BI | GGWCC | 1 cut(s) | 864 |
| XapI | RAATTY | 1 cut(s) | 485 |
| XbaI | TCTAGA | 1 cut(s) | 1066 |
| XspI | CTAG | 3 cut(s) | 314, 927, 1067 |
| ZrmI | AGTACT | 1 cut(s) | 1105 |