Rw5G005530

Splicing factor 3B subunit

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
5844395 .. 5850417
6023 bp
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UTR
Exon/CDS
Intron
Rw5G005530.1

Sequence Viewer

Length: 1362 bp
ATGAAAAAACAACCGCCATACTCCTCTTCCTTCTCCCCAGGAGGCTCGTCGGCAGACGCCCACCACAAGGAAAACCTTTCGAGCTCACCTTGCAAAAGAAACCCAAACCACGCGGCAAGCCACATCAAAACTCCTAATCTGTGTCCTTCAGCTGAAGAGCCTGAAACCACCGCTGCAAACTCCGCCGAACGTCCCAACGCAGAGAAGTACCCAGCACTATACAATCCACCGCATACCGCCGCCGCGATCTGGCCACTGGCCACTTGCTCCACACCTGCGTCGCCGTCGATCGCCCAATACCCATCATCCACGCTAGCGCTGCCGCCTGGGAAGAGTGAAGGATTGTCCACGCCCCAATCCCTTCAACGGCTAATGAAGATTGCAGAATTGAAAAAGCTCTGTGCGTGTGGGATGCAACTGCTTTTCTTTCTGAAATTGTATCGGAATACTGTACTGGTGCCAAGGCATTGGTGCCAGAACAGGAAATTTCTACAGGGTAAATGTGGTACCGGAAAACAACCGTTTCAGCTTCCTGATTTCATTGCTGGAACTGGAATTGAGAAAATTAGACAGGCATACATTGAAAAAGAAGATAGTAAGAAGACAAAGCAAGTGCAACGAGAATGTATGCAGCCAAAGATGGGCAAAACAGATATTGATTATCTGGTTCTTCATGATGCCTTTTTCAAGTACCAAACTATGCCAGAGCTCACAACACTTGGTGATCTGTACCATGAAGGGAAAGAGTTTGAGGTAAAATTAAGAGAGATGAAGCCAGAATTGCTGTCATATGAACTGAAAGAAGCTCTTGGTATGCCAGATGGTGCTCCTCCGCCATGTCTCATTAAATATGCAGAGATATGGTCCCACTCATTATATCCACATTTGAAAATCCCTGGACTGAATGCTCCCATCCCCACCGGAGCTAGCTTTGGTAATCATGTAGGTGGCTGTGGAAAGCCTCTGTTTAAGAAGTTTTTTGAAGAAGAGCCAGTTGATAAGACAAAGCATTGGGGTGATTTGGAGAGAGAGGAAGAAGAGGAAGAACCGGTGGAGGGCAAAGATCTAGAAGATGGTGTTGAATCTGTAGATAGCCTTTCAAGTACTCCCACTGGCAATGAGAAACCAGATGTCATTGACCTCCACAAGCAGCAGAGAAAGGAGCCTGAAAGATCTTTATACCAAGTCAGAAAGCATATAAAGTGGATGTTACTACAACCTGAAGAGTTAGAAGCTATGGAGAACGTCTTGCCTGAAAAGTATGAACAAGCAAGGGGAGAGAAGAAGCTGCGAAGTCAGCGAGAGGATTTCAGTGACATGGTTGCGGAGAAAAGGAAAAGAAAAAAAAAAAAACTAAATTAA

Protein Analysis

453

Amino Acids

51.18

Weight (kDa)

8.16

Isoelectric Point (pI)

53.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF382 PF04037 139 - 249 1.5e-41 Domain of unknown function (DUF382)
PSP PF04046 258 - 303 2.4e-08 PSP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 283
Acc36I ACCTGC 1 cut(s) 283
Acc65I GGTACC 1 cut(s) 506
AccB1I GGYRCC 3 cut(s) 457, 471, 506
AccII CGCG 2 cut(s) 113, 245
AcoI YGGCCR 2 cut(s) 251, 258
AcsI RAATTY 1 cut(s) 485
AcuI CTGAAG 3 cut(s) 132, 174, 1242
AcyI GRCGYC 1 cut(s) 57
AdeI CACNNNGTG 1 cut(s) 722
AfaI GTAC 6 cut(s) 209, 453, 508, 692, 731, 1105
AfeI AGCGCT 1 cut(s) 318
AfiI CCNNNNNNNGG 5 cut(s) 67, 249, 366, 641, 1055
AgeI ACCGGT 1 cut(s) 1048
AgsI TTSAA 8 cut(s) 365, 391, 584, 688, 889, 983, 1082, 1101
AjnI CCWGG 3 cut(s) 37, 325, 895
Alw21I GWGCWC 3 cut(s) 86, 711, 829
Alw26I GTCTC 1 cut(s) 845
Aor51HI AGCGCT 1 cut(s) 318
AoxI GGCC 2 cut(s) 251, 258
ApeKI GCWGC 5 cut(s) 173, 319, 631, 1150, 1288
ApoI RAATTY 1 cut(s) 485
AsiGI ACCGGT 1 cut(s) 1048
Asp718I GGTACC 1 cut(s) 506
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 864
AsuHPI GGTGA 3 cut(s) 78, 734, 1028
AsuNHI GCTAGC 2 cut(s) 313, 926
AvaII GGWCC 1 cut(s) 864
BalI TGGCCA 2 cut(s) 253, 260
BanI GGYRCC 3 cut(s) 457, 471, 506
BanII GRGCYC 2 cut(s) 86, 711
BbsI GAAGAC 1 cut(s) 608
Bbv12I GWGCWC 3 cut(s) 86, 711, 829
BbvI GCAGC 5 cut(s) 160, 306, 643, 1162, 1275
BccI CCATC 5 cut(s) 310, 634, 815, 920, 1067
BceAI ACGGC 2 cut(s) 268, 383
BciT130I CCWGG 3 cut(s) 39, 327, 897
BcoDI GTCTC 1 cut(s) 845
BfaI CTAG 3 cut(s) 314, 927, 1067
BfmI CTRYAG 2 cut(s) 491, 1086
BfoI RGCGCY 1 cut(s) 320
BfuAI ACCTGC 1 cut(s) 283
BglII AGATCT 2 cut(s) 1063, 1172
BisI GCNGC 9 cut(s) 114, 174, 240, 243, 320, 323, 632, 1151, 1289
BlsI GCNGC 9 cut(s) 115, 175, 241, 244, 321, 324, 633, 1152, 1290
BmcAI AGTACT 1 cut(s) 1105
Bme1390I CCNGG 3 cut(s) 39, 327, 897
Bme18I GGWCC 1 cut(s) 864
BmgT120I GGNCC 1 cut(s) 864
BmiI GGNNCC 5 cut(s) 459, 473, 508, 866, 1164
BmrFI CCNGG 3 cut(s) 39, 327, 897
BmsI GCATC 2 cut(s) 402, 667
BmtI GCTAGC 2 cut(s) 317, 930
BpiI GAAGAC 1 cut(s) 608
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 4 cut(s) 37, 326, 461, 895
BsaWI WCCGGW 3 cut(s) 509, 920, 1048
Bsc4I CCNNNNNNNGG 5 cut(s) 67, 249, 366, 641, 1055
Bse118I RCCGGY 1 cut(s) 1048
Bse1I ACTGG 5 cut(s) 261, 459, 556, 992, 1117
Bse3DI GCAATG 2 cut(s) 540, 1123
BseBI CCWGG 3 cut(s) 39, 327, 897
BseDI CCNNGG 4 cut(s) 37, 326, 461, 895
BseGI GGATG 4 cut(s) 305, 417, 912, 1212
BseLI CCNNNNNNNGG 5 cut(s) 67, 249, 366, 641, 1055
BseMI GCAATG 2 cut(s) 540, 1123
BseNI ACTGG 5 cut(s) 261, 459, 556, 992, 1117
BseRI GAGGAG 2 cut(s) 13, 819
BseXI GCAGC 5 cut(s) 160, 306, 643, 1162, 1275
BseYI CCCAGC 1 cut(s) 211
Bsh1236I CGCG 2 cut(s) 113, 245
Bsh1285I CGRYCG 1 cut(s) 291
BshFI GGCC 2 cut(s) 253, 260
BshNI GGYRCC 3 cut(s) 457, 471, 506
BshTI ACCGGT 1 cut(s) 1048
BsiEI CGRYCG 1 cut(s) 291
BsiHKAI GWGCWC 3 cut(s) 86, 711, 829
BsiSI CCGG 3 cut(s) 510, 921, 1049
BslFI GGGAC 2 cut(s) 177, 850
BslI CCNNNNNNNGG 5 cut(s) 67, 249, 366, 641, 1055
BsmAI GTCTC 1 cut(s) 845
BsmFI GGGAC 2 cut(s) 177, 850
BsmI GAATGC 1 cut(s) 910
BsnI GGCC 2 cut(s) 253, 260
Bsp1286I GDGCHC 3 cut(s) 86, 711, 829
Bsp143I GATC 5 cut(s) 246, 288, 724, 1063, 1172
BspANI GGCC 2 cut(s) 253, 260
BspFNI CGCG 2 cut(s) 113, 245
BspHI TCATGA 1 cut(s) 673
BspLI GGNNCC 5 cut(s) 459, 473, 508, 866, 1164
BspMI ACCTGC 1 cut(s) 283
BspOI GCTAGC 2 cut(s) 317, 930
BspQI GCTCTTC 2 cut(s) 150, 981
BspT107I GGYRCC 3 cut(s) 457, 471, 506
BsrDI GCAATG 2 cut(s) 540, 1123
BsrFI RCCGGY 1 cut(s) 1048
BsrI ACTGG 5 cut(s) 261, 459, 556, 992, 1117
BssAI RCCGGY 1 cut(s) 1048
BssECI CCNNGG 4 cut(s) 37, 326, 461, 895
BssMI GATC 5 cut(s) 246, 288, 724, 1063, 1172
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 461
Bst2UI CCWGG 3 cut(s) 39, 327, 897
Bst4CI ACNGT 2 cut(s) 451, 522
Bst6I CTCTTC 6 cut(s) 31, 150, 326, 981, 1032, 1218
BstACI GRCGYC 1 cut(s) 57
BstC8I GCNNGC 3 cut(s) 118, 315, 928
BstF5I GGATG 4 cut(s) 305, 417, 912, 1212
BstFNI CGCG 2 cut(s) 113, 245
BstH2I RGCGCY 1 cut(s) 320
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 5 cut(s) 249, 291, 727, 1066, 1175
BstMAI GTCTC 1 cut(s) 845
BstMBI GATC 5 cut(s) 246, 288, 724, 1063, 1172
BstMCI CGRYCG 1 cut(s) 291
BstMWI GCNNNNNNNGC 5 cut(s) 90, 182, 319, 781, 1297
BstNI CCWGG 3 cut(s) 39, 327, 897
BstSCI CCNGG 3 cut(s) 37, 325, 895
BstSFI CTRYAG 2 cut(s) 491, 1086
BstUI CGCG 2 cut(s) 113, 245
BstV1I GCAGC 5 cut(s) 160, 306, 643, 1162, 1275
BstV2I GAAGAC 1 cut(s) 608
BstX2I RGATCY 2 cut(s) 1063, 1172
BstXI CCANNNNNNTGG 1 cut(s) 468
BstYI RGATCY 2 cut(s) 1063, 1172
BsuRI GGCC 2 cut(s) 253, 260
BtsCI GGATG 4 cut(s) 305, 417, 912, 1212
BtsIMutI CAGTG 3 cut(s) 254, 1110, 1318
BveI ACCTGC 1 cut(s) 283
Cac8I GCNNGC 3 cut(s) 118, 315, 928
CciI TCATGA 1 cut(s) 673
CfoI GCGC 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 1048
Cfr13I GGNCC 1 cut(s) 864
CseI GACGC 2 cut(s) 65, 267
Csp6I GTAC 6 cut(s) 208, 452, 507, 691, 730, 1104
CspAI ACCGGT 1 cut(s) 1048
CviAII CATG 5 cut(s) 674, 734, 837, 941, 1318
CviQI GTAC 6 cut(s) 208, 452, 507, 691, 730, 1104
DpnI GATC 5 cut(s) 248, 290, 726, 1065, 1174
DpnII GATC 5 cut(s) 246, 288, 724, 1063, 1172
DraIII CACNNNGTG 1 cut(s) 722
EaeI YGGCCR 2 cut(s) 251, 258
Eam1104I CTCTTC 6 cut(s) 31, 150, 326, 981, 1032, 1218
EarI CTCTTC 6 cut(s) 31, 150, 326, 981, 1032, 1218
EciI GGCGGA 2 cut(s) 172, 822
Ecl136II GAGCTC 2 cut(s) 84, 709
Eco130I CCWWGG 1 cut(s) 461
Eco24I GRGCYC 2 cut(s) 86, 711
Eco47I GGWCC 1 cut(s) 864
Eco47III AGCGCT 1 cut(s) 318
Eco53kI GAGCTC 2 cut(s) 84, 709
Eco57I CTGAAG 3 cut(s) 132, 174, 1242
EcoICRI GAGCTC 2 cut(s) 84, 709
EcoRII CCWGG 3 cut(s) 37, 325, 895
EcoT14I CCWWGG 1 cut(s) 461
EcoT38I GRGCYC 2 cut(s) 86, 711
ErhI CCWWGG 1 cut(s) 461
FaeI CATG 5 cut(s) 677, 737, 840, 944, 1321
FalI AAGNNNNNCTT 2 cut(s) 792, 824
FaqI GGGAC 2 cut(s) 177, 850
FatI CATG 5 cut(s) 673, 733, 836, 940, 1317
FauNDI CATATG 1 cut(s) 790
Fnu4HI GCNGC 9 cut(s) 114, 174, 240, 243, 320, 323, 632, 1151, 1289
FokI GGATG 4 cut(s) 292, 424, 899, 1219
FriOI GRGCYC 2 cut(s) 86, 711
Fsp4HI GCNGC 9 cut(s) 114, 174, 240, 243, 320, 323, 632, 1151, 1289
FspBI CTAG 3 cut(s) 314, 927, 1067
GlaI GCGC 1 cut(s) 318
GluI GCNGC 9 cut(s) 114, 174, 240, 243, 320, 323, 632, 1151, 1289
GsaI CCCAGC 1 cut(s) 215
HaeII RGCGCY 1 cut(s) 320
HaeIII GGCC 2 cut(s) 253, 260
HapII CCGG 3 cut(s) 510, 921, 1049
HgaI GACGC 2 cut(s) 65, 267
HhaI GCGC 1 cut(s) 319
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 5 cut(s) 677, 737, 840, 944, 1321
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HinfI GANTC 1 cut(s) 1082
HpaII CCGG 3 cut(s) 510, 921, 1049
HphI GGTGA 3 cut(s) 78, 734, 1028
Hpy166II GTNNAC 1 cut(s) 348
Hpy188I TCNGA 3 cut(s) 432, 444, 1190
Hpy188III TCNNGA 3 cut(s) 533, 674, 1067
Hpy8I GTNNAC 1 cut(s) 348
Hpy99I CGWCG 3 cut(s) 52, 283, 289
HpyAV CCTTC 5 cut(s) 40, 156, 332, 371, 731
HpyCH4III ACNGT 2 cut(s) 451, 522
HpyCH4IV ACGT 2 cut(s) 190, 1245
HpyCH4V TGCA 7 cut(s) 93, 176, 383, 415, 616, 631, 854
HpyF10VI GCNNNNNNNGC 5 cut(s) 90, 182, 319, 781, 1297
HpySE526I ACGT 2 cut(s) 190, 1245
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 5 cut(s) 677, 737, 840, 944, 1321
HspAI GCGC 1 cut(s) 317
KpnI GGTACC 1 cut(s) 510
Kzo9I GATC 5 cut(s) 246, 288, 724, 1063, 1172
LguI GCTCTTC 2 cut(s) 150, 981
LmnI GCTCC 5 cut(s) 272, 832, 913, 923, 1162
Lsp1109I GCAGC 5 cut(s) 160, 306, 643, 1162, 1275
LweI GCATC 2 cut(s) 402, 667
MaeI CTAG 3 cut(s) 314, 927, 1067
MaeII ACGT 2 cut(s) 190, 1245
MaeIII GTNAC 2 cut(s) 1209, 1313
MalI GATC 5 cut(s) 248, 290, 726, 1065, 1174
MboI GATC 5 cut(s) 246, 288, 724, 1063, 1172
MflI RGATCY 2 cut(s) 1063, 1172
MhlI GDGCHC 3 cut(s) 86, 711, 829
MlsI TGGCCA 2 cut(s) 253, 260
MluCI AATT 8 cut(s) 386, 434, 485, 555, 564, 758, 779, 1357
MluNI TGGCCA 2 cut(s) 253, 260
Mox20I TGGCCA 2 cut(s) 253, 260
MscI TGGCCA 2 cut(s) 253, 260
MseI TTAA 4 cut(s) 761, 846, 969, 1360
MslI CAYNNNNRTG 2 cut(s) 945, 1014
Msp20I TGGCCA 2 cut(s) 253, 260
MspA1I CMGCKG 2 cut(s) 152, 173
MspI CCGG 3 cut(s) 510, 921, 1049
MspR9I CCNGG 3 cut(s) 39, 327, 897
Mva1269I GAATGC 1 cut(s) 910
MvaI CCWGG 3 cut(s) 39, 327, 897
MvnI CGCG 2 cut(s) 113, 245
MwoI GCNNNNNNNGC 5 cut(s) 90, 182, 319, 781, 1297
NdeI CATATG 1 cut(s) 790
NdeII GATC 5 cut(s) 246, 288, 724, 1063, 1172
NheI GCTAGC 2 cut(s) 313, 926
NlaIII CATG 5 cut(s) 677, 737, 840, 944, 1321
NlaIV GGNNCC 5 cut(s) 459, 473, 508, 866, 1164
NmuCI GTSAC 1 cut(s) 1313
PagI TCATGA 1 cut(s) 673
PaqCI CACCTGC 1 cut(s) 283
PciSI GCTCTTC 2 cut(s) 150, 981
PctI GAATGC 1 cut(s) 910
PfeI GAWTC 1 cut(s) 1082
PinAI ACCGGT 1 cut(s) 1048
PkrI GCNGC 9 cut(s) 115, 175, 241, 244, 321, 324, 633, 1152, 1290
Ple19I CGATCG 1 cut(s) 291
Psp124BI GAGCTC 2 cut(s) 86, 711
Psp6I CCWGG 3 cut(s) 37, 325, 895
PspFI CCCAGC 1 cut(s) 211
PspGI CCWGG 3 cut(s) 37, 325, 895
PspN4I GGNNCC 5 cut(s) 459, 473, 508, 866, 1164
PspPI GGNCC 1 cut(s) 864
PsuI RGATCY 2 cut(s) 1063, 1172
PvuI CGATCG 1 cut(s) 291
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 6 cut(s) 209, 453, 508, 692, 731, 1105
RsaNI GTAC 6 cut(s) 208, 452, 507, 691, 730, 1104
RseI CAYNNNNRTG 2 cut(s) 945, 1014
SacI GAGCTC 2 cut(s) 86, 711
SapI GCTCTTC 2 cut(s) 150, 981
SaqAI TTAA 4 cut(s) 761, 846, 969, 1360
SatI GCNGC 9 cut(s) 114, 174, 240, 243, 320, 323, 632, 1151, 1289
Sau3AI GATC 5 cut(s) 246, 288, 724, 1063, 1172
Sau96I GGNCC 1 cut(s) 864
ScaI AGTACT 1 cut(s) 1105
ScrFI CCNGG 3 cut(s) 39, 327, 897
SduI GDGCHC 3 cut(s) 86, 711, 829
SfaNI GCATC 2 cut(s) 402, 667
SfcI CTRYAG 2 cut(s) 491, 1086
SinI GGWCC 1 cut(s) 864
SmiMI CAYNNNNRTG 2 cut(s) 945, 1014
Sse9I AATT 8 cut(s) 386, 434, 485, 555, 564, 758, 779, 1357
SspMI CTAG 3 cut(s) 314, 927, 1067
SstI GAGCTC 2 cut(s) 86, 711
StyD4I CCNGG 3 cut(s) 37, 325, 895
StyI CCWWGG 1 cut(s) 461
TaaI ACNGT 2 cut(s) 451, 522
TaiI ACGT 2 cut(s) 193, 1248
TaqI TCGA 2 cut(s) 80, 287
TasI AATT 8 cut(s) 386, 434, 485, 555, 564, 758, 779, 1357
TatI WGTACW 2 cut(s) 451, 1103
TauI GCSGC 4 cut(s) 116, 242, 245, 325
TfiI GAWTC 1 cut(s) 1082
Tru1I TTAA 4 cut(s) 761, 846, 969, 1360
Tru9I TTAA 4 cut(s) 761, 846, 969, 1360
TscAI CASTG 3 cut(s) 261, 1117, 1318
TseFI GTSAC 1 cut(s) 1313
TseI GCWGC 5 cut(s) 173, 319, 631, 1150, 1288
Tsp45I GTSAC 1 cut(s) 1313
TspDTI ATGAA 8 cut(s) 17, 389, 529, 662, 750, 785, 807, 1278
TspRI CASTG 3 cut(s) 261, 1117, 1318
VpaK11BI GGWCC 1 cut(s) 864
XapI RAATTY 1 cut(s) 485
XbaI TCTAGA 1 cut(s) 1066
XspI CTAG 3 cut(s) 314, 927, 1067
ZrmI AGTACT 1 cut(s) 1105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.