Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0007554

Physical Location & Seq

Genomic Coordinates Reverse (-)

5411872 .. 5413950

Gene Structure 2079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G005160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGCCAGAGCTCACAACACTTGGTGATCTGTACCACGAAGGGAAAGAGTTTGAGGAAATATTAAGAGAGATGAAGCCAGAATTGCTGTCATATGAACTGAAAGAAGCTCTTGTTCTCTTTAGCTCTGAGATATGGTCCCCCTCATTGTATCCACATTTGAAAATCCCTGGACTGAATGCTCCATCCCCGCCGGAGCTAGCTTTGGAAGAGCCAGTTGATAAGACAAAGCATTTGGGTGATTTGGAGAGAGAGGAAGAAGAGGAAGAACCGATGGAGGGCAAAGATCTAGAAGATGGTATTGAATCTGCAGGTAGCCTTTCAAGACTTCCGCACTTCCTTCTCAGTACTCCCACTGGCAATGAGAAACCTGATGTCATTGACCTTCACAAGCAGCAGAGAAAGGAGCCTGAAAGACCTTTATACCAAAATGAGAAGAAGAGGAAACATAAGATGCCATACATGAGAGATCTGAGTTCTATCAAGTTTTGCAAGAAGCCAAGCAGATTACAGGTGACGGTTACAAGAATAGCGGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

179

Amino Acids

20.64

Weight (kDa)

5.38

Isoelectric Point (pI)

65.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0006921 RchiOBHm_Chr5g0006931 RchiOBHm_Chr5g0007041 RchiOBHm_Chr5g0007191 RchiOBHm_Chr5g0007351
rosa_laevigata	RLG00000031441 RLG00000031449 RLG00000031452
rosa_roxburghii	Rroxscaffold_1G00069130
rosa_rugosa	Rorug04G0425600 Rorug04G0425900 Rorug04G0426200 Rorug04G0426300 Rorug04G0426400
rosa_samantha	Rh5AG053200 Rh5AG053500 Rh5AG053800 Rh5AG054700 Rh5CG060800 Rh5CG061100 Rh5CG061200 Rh5CG061400
rosa_wichuraiana	Rw5G005120 Rw5G005160 Rw5G005530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	299
AciI	CCGC	3 cut(s)	188, 329, 530
AdeI	CACNNNGTG	1 cut(s)	23
AfaI	GTAC	2 cut(s)	32, 346
AfiI	CCNNNNNNNGG	1 cut(s)	275
AgsI	TTSAA	3 cut(s)	160, 302, 321
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	5 cut(s)	10, 107, 123, 196, 200
AluI	AGCT	5 cut(s)	10, 107, 123, 196, 200
Alw21I	GWGCWC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	391
ArsI	GACNNNNNNTTYG	2 cut(s)	214, 246
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	3 cut(s)	35, 248, 523
AsuNHI	GCTAGC	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	135
BanII	GRGCYC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	3 cut(s)	190, 265, 287
BciT130I	CCWGG	1 cut(s)	168
BciVI	GTATCC	1 cut(s)	159
BfaI	CTAG	2 cut(s)	197, 287
BfmI	CTRYAG	1 cut(s)	306
BfuAI	ACCTGC	1 cut(s)	299
BfuI	GTATCC	1 cut(s)	159
BglII	AGATCT	2 cut(s)	283, 466
BisI	GCNGC	1 cut(s)	392
BlsI	GCNGC	1 cut(s)	393
BmcAI	AGTACT	1 cut(s)	346
Bme1390I	CCNGG	1 cut(s)	168
Bme18I	GGWCC	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	135
BmiI	GGNNCC	2 cut(s)	137, 405
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	441
BmtI	GCTAGC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	2 cut(s)	212, 358
Bse3DI	GCAATG	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMI	GCAATG	1 cut(s)	364
BseMII	CTCAG	3 cut(s)	117, 355, 461
BseNI	ACTGG	2 cut(s)	212, 358
BseXI	GCAGC	1 cut(s)	403
BsiHKAI	GWGCWC	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	121
BsmI	GAATGC	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	3 cut(s)	25, 283, 466
BspACI	CCGC	3 cut(s)	188, 329, 530
BspCNI	CTCAG	3 cut(s)	118, 354, 462
BspLI	GGNNCC	2 cut(s)	137, 405
BspMAI	CTGCAG	1 cut(s)	310
BspMI	ACCTGC	1 cut(s)	299
BspOI	GCTAGC	1 cut(s)	200
BspQI	GCTCTTC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	364
BsrI	ACTGG	2 cut(s)	212, 358
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	3 cut(s)	25, 283, 466
Bst2UI	CCWGG	1 cut(s)	168
Bst4CI	ACNGT	1 cut(s)	517
Bst6I	CTCTTC	3 cut(s)	201, 252, 431
BstC8I	GCNNGC	1 cut(s)	198
BstDEI	CTNAG	3 cut(s)	126, 341, 470
BstF5I	GGATG	1 cut(s)	182
BstKTI	GATC	3 cut(s)	28, 286, 469
BstMBI	GATC	3 cut(s)	25, 283, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstNI	CCWGG	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	166
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	403
BstX2I	RGATCY	2 cut(s)	283, 466
BstYI	RGATCY	2 cut(s)	283, 466
BsuI	GTATCC	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	182
BtsIMutI	CAGTG	1 cut(s)	351
BveI	ACCTGC	1 cut(s)	299
Cac8I	GCNNGC	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	135
Csp6I	GTAC	2 cut(s)	31, 345
CviAII	CATG	1 cut(s)	460
CviQI	GTAC	2 cut(s)	31, 345
DdeI	CTNAG	3 cut(s)	126, 341, 470
DpnI	GATC	3 cut(s)	27, 285, 468
DpnII	GATC	3 cut(s)	25, 283, 466
DraIII	CACNNNGTG	1 cut(s)	23
Eam1104I	CTCTTC	3 cut(s)	201, 252, 431
EarI	CTCTTC	3 cut(s)	201, 252, 431
Ecl136II	GAGCTC	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	10
EcoICRI	GAGCTC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	12
FaeI	CATG	1 cut(s)	463
FaiI	YATR	7 cut(s)	91, 93, 133, 421, 447, 457, 461
FalI	AAGNNNNNCTT	2 cut(s)	93, 125
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	1 cut(s)	459
FauI	CCCGC	2 cut(s)	195, 523
FauNDI	CATATG	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	392
FokI	GGATG	1 cut(s)	169
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	1 cut(s)	392
FspBI	CTAG	2 cut(s)	197, 287
GluI	GCNGC	1 cut(s)	392
HapII	CCGG	1 cut(s)	191
Hin1II	CATG	1 cut(s)	463
HinfI	GANTC	1 cut(s)	302
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	3 cut(s)	35, 248, 523
Hpy188I	TCNGA	2 cut(s)	127, 471
Hpy188III	TCNNGA	2 cut(s)	287, 321
HpyAV	CCTTC	3 cut(s)	32, 347, 392
HpyCH4III	ACNGT	1 cut(s)	517
HpyCH4V	TGCA	2 cut(s)	308, 489
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	3 cut(s)	126, 341, 470
Hsp92II	CATG	1 cut(s)	463
Kzo9I	GATC	3 cut(s)	25, 283, 466
LguI	GCTCTTC	1 cut(s)	201
LmnI	GCTCC	3 cut(s)	184, 193, 403
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	1 cut(s)	441
MaeI	CTAG	2 cut(s)	197, 287
MaeIII	GTNAC	2 cut(s)	511, 517
MalI	GATC	3 cut(s)	27, 285, 468
MboI	GATC	3 cut(s)	25, 283, 466
MboII	GAAGA	7 cut(s)	218, 266, 269, 275, 302, 445, 448
MflI	RGATCY	2 cut(s)	283, 466
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	1 cut(s)	80
MnlI	CCTC	6 cut(s)	46, 151, 244, 253, 268, 432
MseI	TTAA	1 cut(s)	62
MslI	CAYNNNNRTG	1 cut(s)	234
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	82
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	3 cut(s)	25, 283, 466
NheI	GCTAGC	1 cut(s)	196
NlaIII	CATG	1 cut(s)	463
NlaIV	GGNNCC	2 cut(s)	137, 405
NmuCI	GTSAC	1 cut(s)	511
PciSI	GCTCTTC	1 cut(s)	201
PctI	GAATGC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	1 cut(s)	393
Psp124BI	GAGCTC	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	2 cut(s)	137, 405
PspPI	GGNCC	1 cut(s)	135
PstI	CTGCAG	1 cut(s)	310
PsuI	RGATCY	2 cut(s)	283, 466
RsaI	GTAC	2 cut(s)	32, 346
RsaNI	GTAC	2 cut(s)	31, 345
RseI	CAYNNNNRTG	1 cut(s)	234
SacI	GAGCTC	1 cut(s)	12
SapI	GCTCTTC	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	62
SatI	GCNGC	1 cut(s)	392
Sau3AI	GATC	3 cut(s)	25, 283, 466
Sau96I	GGNCC	1 cut(s)	135
ScaI	AGTACT	1 cut(s)	346
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	12
SfaNI	GCATC	1 cut(s)	441
SfcI	CTRYAG	1 cut(s)	306
SinI	GGWCC	1 cut(s)	135
SmiMI	CAYNNNNRTG	1 cut(s)	234
Sse9I	AATT	1 cut(s)	80
SsiI	CCGC	3 cut(s)	188, 329, 530
SspI	AATATT	1 cut(s)	60
SspMI	CTAG	2 cut(s)	197, 287
SstI	GAGCTC	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	166
TaaI	ACNGT	1 cut(s)	517
TasI	AATT	1 cut(s)	80
TatI	WGTACW	1 cut(s)	344
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	1 cut(s)	62
Tru9I	TTAA	1 cut(s)	62
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	1 cut(s)	511
TseI	GCWGC	1 cut(s)	391
Tsp45I	GTSAC	1 cut(s)	511
TspDTI	ATGAA	2 cut(s)	86, 108
TspRI	CASTG	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	135
XbaI	TCTAGA	1 cut(s)	286
XspI	CTAG	2 cut(s)	197, 287
ZrmI	AGTACT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.