Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007554

Physical Location & Seq

Genomic Coordinates Forward (+)

4537511 .. 4540676

Gene Structure 3166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG061100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTCCAAGTATAAGCCCTTCCCGGGAAACAAGAGCACCTCTAGAATCGAGAACATAACATCCAGAATGAGGCCCACCCAGGCCATGCCAGCTGGTTCTTCTCGATTAAGTTCCTACAATGAAAACCAACAAAGTTCCTTAAAATTGACTGTTGGAGGGGAGGAGAAAAACCGGAAAGCTTCTCAGGCCACCGCCGGCGACGTCACCGTCGTTCGCTTGCTTTGTGTGGTCTATACTCTGTATGTAGCTGCTAGTGAAGTAATGAAAACGAATGTCCAAGGGAGGAAAAGAAAGATGAGTCTCACGAACGAAGGAGCCTCAAAGAAGAAGGCTGATTCAGATTCTGAAGAGGATAACAACCTAAAAGAGAAAGGCGTTTCAAACAAAAAGAAAGCTCAACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

14.76

Weight (kDa)

10.04

Isoelectric Point (pI)

55.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0006921 RchiOBHm_Chr5g0006931 RchiOBHm_Chr5g0007041 RchiOBHm_Chr5g0007191 RchiOBHm_Chr5g0007351
rosa_laevigata	RLG00000031441 RLG00000031449 RLG00000031452
rosa_roxburghii	Rroxscaffold_1G00069130
rosa_rugosa	Rorug04G0425600 Rorug04G0425900 Rorug04G0426200 Rorug04G0426300 Rorug04G0426400
rosa_samantha	Rh5AG053200 Rh5AG053500 Rh5AG053800 Rh5AG054700 Rh5CG060800 Rh5CG061100 Rh5CG061200 Rh5CG061400
rosa_wichuraiana	Rw5G005120 Rw5G005160 Rw5G005530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AatII	GACGTC	1 cut(s)	204
AciI	CCGC	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	366
AcyI	GRCGYC	1 cut(s)	201
AfiI	CCNNNNNNNGG	2 cut(s)	23, 69
AgsI	TTSAA	1 cut(s)	381
AjnI	CCWGG	1 cut(s)	78
AloI	GAACNNNNNNTCC	2 cut(s)	44, 76
AluBI	AGCT	4 cut(s)	92, 179, 248, 395
AluI	AGCT	4 cut(s)	92, 179, 248, 395
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	305
AlwNI	CAGNNNCTG	1 cut(s)	344
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	3 cut(s)	71, 81, 186
ApeKI	GCWGC	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	72
AsuC2I	CCSGG	2 cut(s)	23, 24
AsuHPI	GGTGA	1 cut(s)	196
AvaI	CYCGRG	1 cut(s)	22
BarI	GAAGNNNNNNTAC	1 cut(s)	34
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	235
BciT130I	CCWGG	1 cut(s)	80
BcnI	CCSGG	2 cut(s)	23, 24
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	2 cut(s)	42, 252
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	3 cut(s)	23, 24, 80
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	3 cut(s)	23, 24, 80
BpuMI	CCSGG	2 cut(s)	23, 24
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	3 cut(s)	22, 78, 277
BsaWI	WCCGGW	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 69
Bse118I	RCCGGY	1 cut(s)	194
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	3 cut(s)	22, 78, 277
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	2 cut(s)	23, 69
BseMII	CTCAG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	235
BshFI	GGCC	3 cut(s)	73, 83, 188
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	3 cut(s)	23, 172, 195
BslI	CCNNNNNNNGG	2 cut(s)	23, 69
BsmAI	GTCTC	1 cut(s)	305
BsnI	GGCC	3 cut(s)	73, 83, 188
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	38
BspACI	CCGC	1 cut(s)	192
BspANI	GGCC	3 cut(s)	73, 83, 188
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	316
BsrFI	RCCGGY	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	3 cut(s)	22, 78, 277
BssNI	GRCGYC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	3 cut(s)	151, 208, 402
Bst6I	CTCTTC	1 cut(s)	342
BstACI	GRCGYC	1 cut(s)	201
BstC8I	GCNNGC	3 cut(s)	90, 196, 218
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	59
BstMAI	GTCTC	1 cut(s)	305
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 185
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	3 cut(s)	21, 22, 78
BstV1I	GCAGC	1 cut(s)	235
BsuRI	GGCC	3 cut(s)	73, 83, 188
BtsCI	GGATG	1 cut(s)	59
Cac8I	GCNNGC	3 cut(s)	90, 196, 218
CaiI	CAGNNNCTG	1 cut(s)	344
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	72
Cfr9I	CCCGGG	1 cut(s)	22
CviAII	CATG	1 cut(s)	85
DdeI	CTNAG	1 cut(s)	183
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	366
Eco88I	CYCGRG	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	1 cut(s)	88
FaiI	YATR	5 cut(s)	12, 56, 86, 234, 243
FatI	CATG	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	2 cut(s)	42, 252
GluI	GCNGC	1 cut(s)	249
HaeIII	GGCC	3 cut(s)	73, 83, 188
HapII	CCGG	3 cut(s)	23, 172, 195
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	177
HinfI	GANTC	4 cut(s)	45, 298, 335, 341
HpaII	CCGG	3 cut(s)	23, 172, 195
HphI	GGTGA	1 cut(s)	196
Hpy188I	TCNGA	2 cut(s)	340, 346
Hpy188III	TCNNGA	5 cut(s)	42, 49, 63, 102, 304
Hpy99I	CGWCG	2 cut(s)	203, 212
HpyAV	CCTTC	3 cut(s)	28, 305, 322
HpyCH4III	ACNGT	3 cut(s)	151, 208, 402
HpyCH4IV	ACGT	1 cut(s)	201
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 185
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	1 cut(s)	201
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	1 cut(s)	88
KroI	GCCGGC	1 cut(s)	194
KroNI	GCCGGC	1 cut(s)	196
LmnI	GCTCC	1 cut(s)	314
LpnPI	CCDG	9 cut(s)	36, 65, 76, 78, 92, 102, 170, 185, 208
Lsp1109I	GCAGC	1 cut(s)	235
MaeI	CTAG	2 cut(s)	42, 252
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	202
MboII	GAAGA	3 cut(s)	90, 337, 359
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	1 cut(s)	143
MlyI	GAGTC	1 cut(s)	307
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	7 cut(s)	49, 63, 149, 154, 276, 328, 343
MreI	CGCCGGCG	1 cut(s)	194
MroNI	GCCGGC	1 cut(s)	194
MseI	TTAA	2 cut(s)	107, 140
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	3 cut(s)	23, 172, 195
MspR9I	CCNGG	3 cut(s)	23, 24, 80
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	89, 185
NaeI	GCCGGC	1 cut(s)	196
NciI	CCSGG	2 cut(s)	23, 24
NgoMIV	GCCGGC	1 cut(s)	194
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	1 cut(s)	316
NmuCI	GTSAC	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PdiI	GCCGGC	1 cut(s)	196
PfeI	GAWTC	3 cut(s)	45, 335, 341
PkrI	GCNGC	1 cut(s)	250
PleI	GAGTC	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	316
PspPI	GGNCC	1 cut(s)	72
PstNI	CAGNNNCTG	1 cut(s)	344
PvuII	CAGCTG	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	107, 140
SatI	GCNGC	1 cut(s)	249
Sau96I	GGNCC	1 cut(s)	72
SchI	GAGTC	1 cut(s)	307
ScrFI	CCNGG	3 cut(s)	23, 24, 80
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	7 cut(s)	41, 94, 181, 204, 250, 363, 397
SgrAI	CRCCGGYG	1 cut(s)	194
SmaI	CCCGGG	1 cut(s)	24
Sse9I	AATT	1 cut(s)	143
SsiI	CCGC	1 cut(s)	192
SspMI	CTAG	2 cut(s)	42, 252
StyD4I	CCNGG	3 cut(s)	21, 22, 78
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	3 cut(s)	151, 208, 402
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	2 cut(s)	48, 103
TasI	AATT	1 cut(s)	143
TfiI	GAWTC	3 cut(s)	45, 335, 341
Tru1I	TTAA	2 cut(s)	107, 140
Tru9I	TTAA	2 cut(s)	107, 140
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	2 cut(s)	135, 278
TspMI	CCCGGG	1 cut(s)	22
XbaI	TCTAGA	1 cut(s)	41
XmaI	CCCGGG	1 cut(s)	22
XspI	CTAG	2 cut(s)	42, 252
ZraI	GACGTC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.