Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007554

Physical Location & Seq

Genomic Coordinates Reverse (-)

90132912 .. 90134685

Gene Structure 1774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00069130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAAGCCAGAATTGCTGTCATATGAACTGAAAGAAGCTCTTGGTATGCCAGATGGTGCTCCTCCGCCATGTCTCATTAATATGCAGGAAGAGCCAGTTGATAAGACAAAGCATTGGGGTGATTTGGAGAGAGAGGAAGAAGAGGAAGAACCGATGGAAGGCGAAGATCTAGAAGATGGTATTGAATCTGGGGAGAAGAAGCTGCGAAGTCAGCGAGAGGATTTCAGTGACATGGTTGCGGAGGTGGTGTGTGCCTCTCGGAATGAGAAGAAGAGGAAACATAAGATGCCATACATGAGAGATCTGAGTTCTATCAAGTTTTGCAAGAAGCCAAGCAGATTACAGGTGACGGTTACAAGAATAGCGGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

124

Amino Acids

14.29

Weight (kDa)

5.11

Isoelectric Point (pI)

67.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSP	PF04046	2 - 30	1.6e-07	PSP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0006921 RchiOBHm_Chr5g0006931 RchiOBHm_Chr5g0007041 RchiOBHm_Chr5g0007191 RchiOBHm_Chr5g0007351
rosa_laevigata	RLG00000031441 RLG00000031449 RLG00000031452
rosa_roxburghii	Rroxscaffold_1G00069130
rosa_rugosa	Rorug04G0425600 Rorug04G0425900 Rorug04G0426200 Rorug04G0426300 Rorug04G0426400
rosa_samantha	Rh5AG053200 Rh5AG053500 Rh5AG053800 Rh5AG054700 Rh5CG060800 Rh5CG061100 Rh5CG061200 Rh5CG061400
rosa_wichuraiana	Rw5G005120 Rw5G005160 Rw5G005530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	65, 239, 365
AfiI	CCNNNNNNNGG	1 cut(s)	158
AgsI	TTSAA	1 cut(s)	185
AluBI	AGCT	2 cut(s)	38, 202
AluI	AGCT	2 cut(s)	38, 202
Alw21I	GWGCWC	1 cut(s)	61
Alw26I	GTCTC	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	202
AseI	ATTAAT	1 cut(s)	78
AsuHPI	GGTGA	2 cut(s)	131, 358
Bbv12I	GWGCWC	1 cut(s)	61
BbvI	GCAGC	1 cut(s)	189
BccI	CCATC	3 cut(s)	47, 148, 170
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	170
BglII	AGATCT	2 cut(s)	166, 301
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
BmsI	GCATC	1 cut(s)	276
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	95
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMII	CTCAG	1 cut(s)	296
BseNI	ACTGG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	2 cut(s)	166, 301
BspACI	CCGC	3 cut(s)	65, 239, 365
BspCNI	CTCAG	1 cut(s)	297
BspQI	GCTCTTC	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	95
BssMI	GATC	2 cut(s)	166, 301
Bst4CI	ACNGT	1 cut(s)	352
Bst6I	CTCTTC	3 cut(s)	84, 135, 266
BstDEI	CTNAG	1 cut(s)	305
BstKTI	GATC	2 cut(s)	169, 304
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	2 cut(s)	166, 301
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 91, 211
BstV1I	GCAGC	1 cut(s)	189
BstX2I	RGATCY	2 cut(s)	166, 301
BstYI	RGATCY	2 cut(s)	166, 301
BtsIMutI	CAGTG	1 cut(s)	232
CviAII	CATG	3 cut(s)	69, 232, 295
CviJI	RGCY	5 cut(s)	7, 38, 94, 202, 331
CviKI_1	RGCY	5 cut(s)	7, 38, 94, 202, 331
DdeI	CTNAG	1 cut(s)	305
DpnI	GATC	2 cut(s)	168, 303
DpnII	GATC	2 cut(s)	166, 301
Eam1104I	CTCTTC	3 cut(s)	84, 135, 266
EarI	CTCTTC	3 cut(s)	84, 135, 266
EciI	GGCGGA	1 cut(s)	54
FaeI	CATG	3 cut(s)	72, 235, 298
FaiI	YATR	9 cut(s)	22, 24, 47, 70, 83, 233, 282, 292, 296
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FatI	CATG	3 cut(s)	68, 231, 294
FauI	CCCGC	1 cut(s)	358
FauNDI	CATATG	1 cut(s)	22
Fnu4HI	GCNGC	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	203
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	1 cut(s)	203
Hin1II	CATG	3 cut(s)	72, 235, 298
HinfI	GANTC	1 cut(s)	185
HphI	GGTGA	2 cut(s)	131, 358
Hpy188I	TCNGA	2 cut(s)	261, 306
Hpy188III	TCNNGA	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4V	TGCA	2 cut(s)	85, 324
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 91, 211
HpyF3I	CTNAG	1 cut(s)	305
Hsp92II	CATG	3 cut(s)	72, 235, 298
Kzo9I	GATC	2 cut(s)	166, 301
LguI	GCTCTTC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	6 cut(s)	21, 63, 71, 108, 174, 329
Lsp1109I	GCAGC	1 cut(s)	189
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	1 cut(s)	170
MaeIII	GTNAC	3 cut(s)	227, 346, 352
MalI	GATC	2 cut(s)	168, 303
MboI	GATC	2 cut(s)	166, 301
MboII	GAAGA	9 cut(s)	101, 149, 152, 158, 176, 185, 208, 280, 283
MflI	RGATCY	2 cut(s)	166, 301
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	1 cut(s)	11
MnlI	CCTC	7 cut(s)	72, 127, 136, 211, 235, 265, 267
MseI	TTAA	1 cut(s)	78
MslI	CAYNNNNRTG	2 cut(s)	80, 117
MwoI	GCNNNNNNNGC	3 cut(s)	13, 91, 211
NdeI	CATATG	1 cut(s)	22
NdeII	GATC	2 cut(s)	166, 301
NlaIII	CATG	3 cut(s)	72, 235, 298
NmuCI	GTSAC	2 cut(s)	227, 346
PciSI	GCTCTTC	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	204
PshBI	ATTAAT	1 cut(s)	78
PsuI	RGATCY	2 cut(s)	166, 301
RseI	CAYNNNNRTG	2 cut(s)	80, 117
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	2 cut(s)	166, 301
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	4 cut(s)	40, 204, 246, 348
SfaNI	GCATC	1 cut(s)	276
SmiMI	CAYNNNNRTG	2 cut(s)	80, 117
Sse9I	AATT	1 cut(s)	11
SsiI	CCGC	3 cut(s)	65, 239, 365
SspMI	CTAG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	352
TasI	AATT	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	2 cut(s)	227, 346
TseI	GCWGC	1 cut(s)	202
Tsp45I	GTSAC	2 cut(s)	227, 346
TspDTI	ATGAA	2 cut(s)	17, 39
TspRI	CASTG	1 cut(s)	232
VspI	ATTAAT	1 cut(s)	78
XbaI	TCTAGA	1 cut(s)	169
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.