RchiOBHm_Chr5g0076401

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003284
Physical Location & Seq
Forward (+)
82056129 .. 82056569
441 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35106

Sequence Viewer

Length: 441 bp
ATGTTCCCCTTCTTGAGAAACACAGTGTTTGAAAGCGGCATAGACGCCGCGTTTGAGTCAACTACAAAATATGAAGCTTACCTCTTCAAAGACGACAAGTATGCTCTTATAAACTACGGTTCTGGTACTGTGCGCCTCATCCACGTCAAGCCCATCCGCGATGGCTATCCTAGCTTGAAAAACACCATCTTTGCAAGTGGAATCGAGGCAGCGCTTGCTTCACACAGGTATAATGAGGCATACCTTTTCAAAGGAGATTCCTACTGCTGGATCAACTTTGGTCCTGGCACCACAAATGACTTCATCGGTGGCGTGAAGCAAATCCGTCCCAATTGGCCTTCCCTCCGAAGCATCTTGCCTCGCAAAAACCATCTACTTGACGTTCACAATCACACTAGCCCTGGTCCTGATGATGATGACCGTGACCAGGATGAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hemopexin

Protein Analysis

146

Amino Acids

16.58

Weight (kDa)

5.91

Isoelectric Point (pI)

30.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hemopexin PF00045 14 - 58 3.4e-06 Hemopexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 287
AccII CGCG 2 cut(s) 50, 159
AciI CCGC 3 cut(s) 36, 48, 157
AclWI GGATC 1 cut(s) 278
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 1 cut(s) 127
AfeI AGCGCT 1 cut(s) 213
AfiI CCNNNNNNNGG 2 cut(s) 267, 427
AgsI TTSAA 4 cut(s) 32, 88, 178, 250
AjiI CACGTC 1 cut(s) 145
AjnI CCWGG 3 cut(s) 283, 400, 426
AluBI AGCT 2 cut(s) 77, 174
AluI AGCT 2 cut(s) 77, 174
AlwI GGATC 1 cut(s) 278
Aor51HI AGCGCT 1 cut(s) 213
AoxI GGCC 1 cut(s) 335
ApeKI GCWGC 1 cut(s) 209
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
AspLEI GCGC 2 cut(s) 135, 214
AspS9I GGNCC 2 cut(s) 281, 404
AvaII GGWCC 2 cut(s) 281, 404
BanI GGYRCC 1 cut(s) 287
BbvI GCAGC 1 cut(s) 221
BccI CCATC 4 cut(s) 155, 161, 194, 378
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 3 cut(s) 285, 402, 428
BfaI CTAG 2 cut(s) 171, 396
BfoI RGCGCY 1 cut(s) 215
BisI GCNGC 3 cut(s) 37, 48, 210
BlsI GCNGC 3 cut(s) 38, 49, 211
Bme1390I CCNGG 3 cut(s) 285, 402, 428
Bme18I GGWCC 2 cut(s) 281, 404
BmgBI CACGTC 1 cut(s) 145
BmgT120I GGNCC 2 cut(s) 281, 404
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 3 cut(s) 285, 402, 428
BmsI GCATC 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 34
BsaBI GATNNNNATC 1 cut(s) 165
BsaHI GRCGYC 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 400
Bsc4I CCNNNNNNNGG 2 cut(s) 267, 427
Bse8I GATNNNNATC 1 cut(s) 165
BseBI CCWGG 3 cut(s) 285, 402, 428
BseDI CCNNGG 1 cut(s) 400
BseGI GGATG 3 cut(s) 138, 153, 436
BseJI GATNNNNATC 1 cut(s) 165
BseLI CCNNNNNNNGG 2 cut(s) 267, 427
BseXI GCAGC 1 cut(s) 221
Bsh1236I CGCG 2 cut(s) 50, 159
BshFI GGCC 1 cut(s) 337
BshNI GGYRCC 1 cut(s) 287
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 2 cut(s) 267, 427
BsmFI GGGAC 1 cut(s) 312
BsnI GGCC 1 cut(s) 337
Bsp143I GATC 1 cut(s) 270
BspACI CCGC 3 cut(s) 36, 48, 157
BspANI GGCC 1 cut(s) 337
BspFNI CGCG 2 cut(s) 50, 159
BspLI GGNNCC 1 cut(s) 289
BspPI GGATC 1 cut(s) 278
BspT107I GGYRCC 1 cut(s) 287
BssECI CCNNGG 1 cut(s) 400
BssMI GATC 1 cut(s) 270
BssNI GRCGYC 1 cut(s) 45
Bst2UI CCWGG 3 cut(s) 285, 402, 428
Bst4CI ACNGT 4 cut(s) 25, 119, 130, 422
Bst6I CTCTTC 1 cut(s) 89
BstACI GRCGYC 1 cut(s) 45
BstAPI GCANNNNNTGC 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 216
BstF5I GGATG 3 cut(s) 138, 153, 436
BstFNI CGCG 2 cut(s) 50, 159
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 2 cut(s) 135, 214
BstKTI GATC 1 cut(s) 273
BstMBI GATC 1 cut(s) 270
BstMWI GCNNNNNNNGC 2 cut(s) 171, 215
BstNI CCWGG 3 cut(s) 285, 402, 428
BstSCI CCNGG 3 cut(s) 283, 400, 426
BstUI CGCG 2 cut(s) 50, 159
BstV1I GCAGC 1 cut(s) 221
BsuRI GGCC 1 cut(s) 337
BtgZI GCGATG 1 cut(s) 174
BtrI CACGTC 1 cut(s) 145
BtsCI GGATG 3 cut(s) 138, 153, 436
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 216
CfoI GCGC 2 cut(s) 135, 214
Cfr13I GGNCC 2 cut(s) 281, 404
CseI GACGC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 126
CviJI RGCY 6 cut(s) 77, 151, 165, 174, 337, 399
CviKI_1 RGCY 6 cut(s) 77, 151, 165, 174, 337, 399
CviQI GTAC 1 cut(s) 126
DpnI GATC 1 cut(s) 272
DpnII GATC 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Eco47I GGWCC 2 cut(s) 281, 404
Eco47III AGCGCT 1 cut(s) 213
EcoRII CCWGG 3 cut(s) 283, 400, 426
FaiI YATR 6 cut(s) 41, 72, 102, 110, 231, 241
FaqI GGGAC 1 cut(s) 312
Fnu4HI GCNGC 3 cut(s) 37, 48, 210
FokI GGATG 2 cut(s) 125, 140
Fsp4HI GCNGC 3 cut(s) 37, 48, 210
FspBI CTAG 2 cut(s) 171, 396
GlaI GCGC 2 cut(s) 134, 213
GluI GCNGC 3 cut(s) 37, 48, 210
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 1 cut(s) 337
HgaI GACGC 1 cut(s) 53
HhaI GCGC 2 cut(s) 135, 214
Hin1I GRCGYC 1 cut(s) 45
Hin6I GCGC 2 cut(s) 133, 212
HinP1I GCGC 2 cut(s) 133, 212
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 75
HinfI GANTC 3 cut(s) 56, 201, 257
Hpy166II GTNNAC 2 cut(s) 60, 385
Hpy188I TCNGA 1 cut(s) 347
Hpy188III TCNNGA 2 cut(s) 13, 407
Hpy8I GTNNAC 2 cut(s) 60, 385
HpyAV CCTTC 2 cut(s) 19, 348
HpyCH4III ACNGT 4 cut(s) 25, 119, 130, 422
HpyCH4IV ACGT 2 cut(s) 144, 381
HpyCH4V TGCA 1 cut(s) 194
HpyF10VI GCNNNNNNNGC 2 cut(s) 171, 215
HpySE526I ACGT 2 cut(s) 144, 381
Hsp92I GRCGYC 1 cut(s) 45
HspAI GCGC 2 cut(s) 133, 212
Kzo9I GATC 1 cut(s) 270
LpnPI CCDG 9 cut(s) 108, 211, 253, 270, 297, 387, 413, 414, 420
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 1 cut(s) 360
MaeI CTAG 2 cut(s) 171, 396
MaeII ACGT 2 cut(s) 144, 381
MaeIII GTNAC 1 cut(s) 422
MalI GATC 1 cut(s) 272
MboI GATC 1 cut(s) 270
MboII GAAGA 1 cut(s) 76
MfeI CAATTG 1 cut(s) 331
MluCI AATT 1 cut(s) 331
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 6 cut(s) 92, 146, 199, 229, 353, 369
MspR9I CCNGG 3 cut(s) 285, 402, 428
MunI CAATTG 1 cut(s) 331
MvaI CCWGG 3 cut(s) 285, 402, 428
MvnI CGCG 2 cut(s) 50, 159
MwoI GCNNNNNNNGC 2 cut(s) 171, 215
NdeII GATC 1 cut(s) 270
NlaIV GGNNCC 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 422
PfeI GAWTC 2 cut(s) 201, 257
PkrI GCNGC 3 cut(s) 38, 49, 211
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PsiI TTATAA 1 cut(s) 110
Psp6I CCWGG 3 cut(s) 283, 400, 426
PspGI CCWGG 3 cut(s) 283, 400, 426
PspN4I GGNNCC 1 cut(s) 289
PspPI GGNCC 2 cut(s) 281, 404
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
SatI GCNGC 3 cut(s) 37, 48, 210
Sau3AI GATC 1 cut(s) 270
Sau96I GGNCC 2 cut(s) 281, 404
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 3 cut(s) 285, 402, 428
SetI ASST 7 cut(s) 79, 84, 147, 176, 230, 246, 384
SfaNI GCATC 1 cut(s) 360
SinI GGWCC 2 cut(s) 281, 404
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 1 cut(s) 331
SsiI CCGC 3 cut(s) 36, 48, 157
SspMI CTAG 2 cut(s) 171, 396
StyD4I CCNGG 3 cut(s) 283, 400, 426
TaaI ACNGT 4 cut(s) 25, 119, 130, 422
TaiI ACGT 2 cut(s) 147, 384
TaqI TCGA 1 cut(s) 204
TasI AATT 1 cut(s) 331
TauI GCSGC 2 cut(s) 39, 50
TfiI GAWTC 2 cut(s) 201, 257
TscAI CASTG 1 cut(s) 30
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 2 cut(s) 87, 292
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 1 cut(s) 30
VpaK11BI GGWCC 2 cut(s) 281, 404
XspI CTAG 2 cut(s) 171, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.