Rh5AG503500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003284
Physical Location & Seq
Reverse (-)
85153038 .. 85154649
1612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG503500.1

Sequence Viewer

Length: 414 bp
ATGTCGATCCCACCGAATTCACCATGGAGAGGATGCGCAGCAAATTTCCGTCAACCTGTCAGTGAACGTGCAGCTCAGTCTTTGGTGGAAACTGTTTATAACTTTAATTGTCGTGTTCCAAATCCCCCAGTGGCTGACATCGAGTATAGAAGCAGCAGTGGAGAAGAAGACATACTCCGCCATGTGTTCCGCTGGGATCTTACCCCCTATCAGGAGGTGTTTCAGAATGGTTTCCAAGAGAGGCGTCAAGAAAACACTACCAATGAAGTCTACTTCAATCTGAATCAGTACTTCCATCATGGCGGTAGGCCTCTTGATTCCCGCCGACCCGCCACCCACGCCTTCGTTAGCACCACCCTTAACAGCGGTTGGCATCCCACCGTCACTGAGACTGGAGGAAGTATATCGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hemopexin

Protein Analysis

137

Amino Acids

15.69

Weight (kDa)

6.18

Isoelectric Point (pI)

65.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Scabin-like PF22596 63 - 122 1.9e-06 Scabin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 99
Acc16I TGCGCA 1 cut(s) 37
AccI GTMKAC 1 cut(s) 270
AciI CCGC 6 cut(s) 178, 190, 303, 322, 330, 366
AclWI GGATC 1 cut(s) 204
AcsI RAATTY 2 cut(s) 16, 43
AcyI GRCGYC 1 cut(s) 244
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 2 cut(s) 29, 211
AgsI TTSAA 1 cut(s) 277
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw26I GTCTC 1 cut(s) 383
AlwI GGATC 1 cut(s) 204
AlwNI CAGNNNCTG 1 cut(s) 134
AoxI GGCC 1 cut(s) 308
ApeKI GCWGC 3 cut(s) 38, 71, 153
ApoI RAATTY 2 cut(s) 16, 43
Asp700I GAANNNNTTC 1 cut(s) 230
AspLEI GCGC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 12
BarI GAAGNNNNNNTAC 2 cut(s) 156, 188
BbsI GAAGAC 1 cut(s) 174
BbvI GCAGC 3 cut(s) 50, 83, 165
BccI CCATC 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 383
BisI GCNGC 3 cut(s) 39, 72, 154
BlsI GCNGC 3 cut(s) 40, 73, 155
BmcAI AGTACT 1 cut(s) 290
BmrI ACTGGG 1 cut(s) 122
BmsI GCATC 2 cut(s) 23, 382
BmuI ACTGGG 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 414
BsaHI GRCGYC 1 cut(s) 244
BsaJI CCNNGG 1 cut(s) 23
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 211
Bse1I ACTGG 2 cut(s) 128, 397
BseDI CCNNGG 1 cut(s) 23
BseGI GGATG 2 cut(s) 38, 373
BseLI CCNNNNNNNGG 2 cut(s) 29, 211
BseMII CTCAG 2 cut(s) 89, 378
BseNI ACTGG 2 cut(s) 128, 397
BseXI GCAGC 3 cut(s) 50, 83, 165
BseYI CCCAGC 1 cut(s) 192
BsgI GTGCAG 1 cut(s) 90
BshFI GGCC 1 cut(s) 310
BslI CCNNNNNNNGG 2 cut(s) 29, 211
BsmAI GTCTC 1 cut(s) 383
BsnI GGCC 1 cut(s) 310
Bsp143I GATC 2 cut(s) 6, 196
Bsp19I CCATGG 1 cut(s) 23
BspACI CCGC 6 cut(s) 178, 190, 303, 322, 330, 366
BspANI GGCC 1 cut(s) 310
BspCNI CTCAG 2 cut(s) 88, 379
BspPI GGATC 1 cut(s) 204
BsrI ACTGG 2 cut(s) 128, 397
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 2 cut(s) 6, 196
BssNI GRCGYC 1 cut(s) 244
BssT1I CCWWGG 1 cut(s) 23
Bst4CI ACNGT 2 cut(s) 94, 382
BstACI GRCGYC 1 cut(s) 244
BstDEI CTNAG 2 cut(s) 75, 387
BstDSI CCRYGG 1 cut(s) 23
BstF5I GGATG 2 cut(s) 38, 373
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 2 cut(s) 9, 199
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 2 cut(s) 6, 196
BstMWI GCNNNNNNNGC 1 cut(s) 338
BstV1I GCAGC 3 cut(s) 50, 83, 165
BstV2I GAAGAC 1 cut(s) 174
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 1 cut(s) 310
BtgI CCRYGG 1 cut(s) 23
BtsCI GGATG 2 cut(s) 38, 373
BtsI GCAGTG 1 cut(s) 163
BtsIMutI CAGTG 4 cut(s) 67, 135, 163, 384
CaiI CAGNNNCTG 1 cut(s) 134
CfoI GCGC 1 cut(s) 38
CseI GACGC 1 cut(s) 233
Csp6I GTAC 1 cut(s) 289
CviAII CATG 3 cut(s) 24, 182, 299
CviJI RGCY 3 cut(s) 74, 134, 310
CviKI_1 RGCY 3 cut(s) 74, 134, 310
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 2 cut(s) 75, 387
DpnI GATC 2 cut(s) 8, 198
DpnII GATC 2 cut(s) 6, 196
EciI GGCGGA 1 cut(s) 167
Eco130I CCWWGG 1 cut(s) 23
Eco147I AGGCCT 1 cut(s) 310
EcoRI GAATTC 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 23
FaeI CATG 3 cut(s) 27, 185, 302
FaiI YATR 8 cut(s) 25, 99, 147, 173, 183, 300, 404, 412
FatI CATG 3 cut(s) 23, 181, 298
FauI CCCGC 2 cut(s) 329, 337
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 3 cut(s) 39, 72, 154
FokI GGATG 2 cut(s) 45, 360
Fsp4HI GCNGC 3 cut(s) 39, 72, 154
FspI TGCGCA 1 cut(s) 37
GlaI GCGC 1 cut(s) 37
GluI GCNGC 3 cut(s) 39, 72, 154
GsaI CCCAGC 1 cut(s) 196
GsuI CTGGAG 1 cut(s) 414
HaeIII GGCC 1 cut(s) 310
HgaI GACGC 1 cut(s) 233
HhaI GCGC 1 cut(s) 38
Hin1I GRCGYC 1 cut(s) 244
Hin1II CATG 3 cut(s) 27, 185, 302
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HincII GTYRAC 1 cut(s) 53
HindII GTYRAC 1 cut(s) 53
HinfI GANTC 2 cut(s) 283, 317
HphI GGTGA 1 cut(s) 12
Hpy166II GTNNAC 3 cut(s) 53, 65, 271
Hpy188I TCNGA 2 cut(s) 225, 282
Hpy188III TCNNGA 3 cut(s) 212, 248, 314
Hpy8I GTNNAC 3 cut(s) 53, 65, 271
HpyAV CCTTC 1 cut(s) 352
HpyCH4III ACNGT 2 cut(s) 94, 382
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 1 cut(s) 71
HpyF10VI GCNNNNNNNGC 1 cut(s) 338
HpyF3I CTNAG 2 cut(s) 75, 387
HpySE526I ACGT 1 cut(s) 67
Hsp92I GRCGYC 1 cut(s) 244
Hsp92II CATG 3 cut(s) 27, 185, 302
HspAI GCGC 1 cut(s) 36
Kzo9I GATC 2 cut(s) 6, 196
LpnPI CCDG 5 cut(s) 69, 141, 178, 197, 378
Lsp1109I GCAGC 3 cut(s) 50, 83, 165
LweI GCATC 2 cut(s) 23, 382
MaeII ACGT 1 cut(s) 67
MaeIII GTNAC 1 cut(s) 382
MalI GATC 2 cut(s) 8, 198
MboI GATC 2 cut(s) 6, 196
MboII GAAGA 2 cut(s) 176, 179
MflI RGATCY 1 cut(s) 196
MluCI AATT 3 cut(s) 16, 43, 106
MnlI CCTC 5 cut(s) 23, 208, 234, 321, 389
MroXI GAANNNNTTC 1 cut(s) 230
MseI TTAA 2 cut(s) 105, 360
MspA1I CMGCKG 2 cut(s) 192, 366
MwoI GCNNNNNNNGC 1 cut(s) 338
NcoI CCATGG 1 cut(s) 23
NdeII GATC 2 cut(s) 6, 196
NlaIII CATG 3 cut(s) 27, 185, 302
NmuCI GTSAC 1 cut(s) 382
NsbI TGCGCA 1 cut(s) 37
PceI AGGCCT 1 cut(s) 310
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PdmI GAANNNNTTC 1 cut(s) 230
PfeI GAWTC 2 cut(s) 283, 317
PkrI GCNGC 3 cut(s) 40, 73, 155
PsiI TTATAA 1 cut(s) 99
PspFI CCCAGC 1 cut(s) 192
PstNI CAGNNNCTG 1 cut(s) 134
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
SaqAI TTAA 2 cut(s) 105, 360
SatI GCNGC 3 cut(s) 39, 72, 154
Sau3AI GATC 2 cut(s) 6, 196
ScaI AGTACT 1 cut(s) 290
SetI ASST 4 cut(s) 58, 70, 76, 219
SfaNI GCATC 2 cut(s) 23, 382
Sse9I AATT 3 cut(s) 16, 43, 106
SseBI AGGCCT 1 cut(s) 310
SsiI CCGC 6 cut(s) 178, 190, 303, 322, 330, 366
StuI AGGCCT 1 cut(s) 310
StyI CCWWGG 1 cut(s) 23
TaaI ACNGT 2 cut(s) 94, 382
TaiI ACGT 1 cut(s) 70
TaqI TCGA 2 cut(s) 5, 141
TasI AATT 3 cut(s) 16, 43, 106
TatI WGTACW 1 cut(s) 288
TfiI GAWTC 2 cut(s) 283, 317
Tru1I TTAA 2 cut(s) 105, 360
Tru9I TTAA 2 cut(s) 105, 360
TscAI CASTG 4 cut(s) 67, 135, 163, 391
TseFI GTSAC 1 cut(s) 382
TseI GCWGC 3 cut(s) 38, 71, 153
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 1 cut(s) 279
TspGWI ACGGA 1 cut(s) 38
TspRI CASTG 4 cut(s) 67, 135, 163, 391
XapI RAATTY 2 cut(s) 16, 43
XmiI GTMKAC 1 cut(s) 270
XmnI GAANNNNTTC 1 cut(s) 230
ZrmI AGTACT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.