Rroxscaffold_1G00005350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003284
Physical Location & Seq
Forward (+)
7307162 .. 7309060
1899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00005350.1

Sequence Viewer

Length: 1587 bp
ATGTCGATCCCGCCGGATTCACCATATAGAGGATGCGCAGCAAACTTCCCTCAACCTGTCAGTGAAGATGACGAGCTTGACGCTCAGTCTTTGTTAGCAACTGTTCTTGACTATAATTGCCGTTATGCAAGTCCCCCGCTGGCTGACGTTGTTTACAGAAGTAGCAGTGGAGAAGAAGACATACTCCGCCATGTGTTCCGTTGGGATCTTACCCCCTATCAGGAGGTGTTTCAGAATGGATTCCGAGCGAGGCGTCAGGAAAACACTCCCGAAGAGGTCTACTTCAATCTGGATCACTACGTCCATCATGGCGGTAGGCCTCTTGATTCCCGCCGACCCGCCACCCACGCCTTCGTTAGCACCACCCTTAACAGCGGTTGGCATCCCACCGTCACTGAGAATGTGGAGGAAGTATATCGCTATGAGATATATGCTCCCGGTGGCATTTGGGTTCGTGAGACTCTTGGTGAGCGTTACCAGTACGGGGCCCAAGATGAGGTCTGCTTTGTTGCTGGCATCGCCCGTCAATACATTCGCTCTGTCCAACGTTTCAGGCTTGTTCGTAATGGAAGATACACAAGACGGGAGAGACTTGATGAGGAAATGATACTGAATGGGAACTACAATCCACAATCGCATCCATACCGGGCGCTCAACATTCGGAGGCCAGTATTGGACTACCTGGCTGAAGATGGTACGAGGCATTATCTGAGATTTCGCATTTGGGAAGGCCCTGCAATCTCCAGGCGAGAGAAACGATCAGCCGACAACTCAGACGCCACCGATTGGTATGCTGGCGGTGTGGCTAACTATGAAAGCTACATAGATGCTGCATTCCGTTCGTCTCGCGAAAATGAAGCCTATCTATTCATGAAGAACGAGTATGTGCTAATCGACTATGCTCCTGCCACTACAAACGACAAGGTACTGAAAGGACCACTTCTTATCTGCGATGGGTTTCCATCCCTCATGGGCACAGCCTTTGCAGAACATGGTATAGATTGTGCTTTTGCGTCTCATAATGGGAATGAAGCCTTCATTTTCTCTGGGAATCTCTGCGCACTGATTGACTACGCACCAGACACCAAAAATGACAGGATAATCAAAGGCCCGATGACCATCATTGCCATGTTCCCCTTCTTCAAAGGGACGGTGTTTGAAAGCGGCATAGACTCCGCGTTTGAGTCAACGAGAAAATATGAAGCTTACCTCTTCAAAGACAACCAGTACGCTCGTATAAACTACGGTTCTGATTCCACTACTCCCGGCAACATTATCACCTCCAATGTCACCGCTGTCAACTTTCCTAGTTTGAAAAACACCATCTTTGAAAGTGGAATTGATGCAGCGTTTGCTTCGCACAAGACTGATCAGGCTTACCTATTCAAAGGAGATACCTACACACGCATCAACTTTACTCCTGGCACCACTGGGGACTACATCATCGGTGGCGTCAAGACGATCCTTCCCAATTGGCCCTCTCTGCAACCCTACTTGCCTTGCAAAAACCGTGGACTTGACATTCACAATCACACTAGCCCTAGTGTTGATGATGATGACCGTGACCAAGATCATGATGAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hemopexin

Protein Analysis

528

Amino Acids

60.08

Weight (kDa)

5.28

Isoelectric Point (pI)

45.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Scabin-like PF22596 66 - 186 5.4e-26 Scabin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 37, 1060
AccB1I GGYRCC 1 cut(s) 1424
AccB7I CCANNNNNTGG 1 cut(s) 786
AccI GTMKAC 1 cut(s) 279
AccII CGCG 2 cut(s) 849, 1178
AclI AACGTT 1 cut(s) 547
AclWI GGATC 3 cut(s) 213, 300, 1456
AcuI CTGAAG 1 cut(s) 708
AcyI GRCGYC 3 cut(s) 253, 777, 1452
AfaI GTAC 4 cut(s) 482, 697, 927, 1229
AfiI CCNNNNNNNGG 5 cut(s) 29, 220, 484, 496, 786
AgsI TTSAA 7 cut(s) 286, 1144, 1160, 1216, 1315, 1331, 1387
AhdI GACNNNNNGTC 1 cut(s) 85
AjnI CCWGG 3 cut(s) 681, 743, 1420
AluBI AGCT 3 cut(s) 76, 819, 1205
AluI AGCT 3 cut(s) 76, 819, 1205
Alw26I GTCTC 4 cut(s) 452, 583, 849, 1020
AlwI GGATC 3 cut(s) 213, 300, 1456
AoxI GGCC 6 cut(s) 317, 486, 665, 730, 1108, 1475
ApaI GGGCCC 1 cut(s) 490
ApeKI GCWGC 3 cut(s) 38, 830, 1346
ArsI GACNNNNNNTTYG 2 cut(s) 1163, 1195
Asp700I GAANNNNTTC 1 cut(s) 239
AspLEI GCGC 3 cut(s) 38, 652, 1061
AspS9I GGNCC 6 cut(s) 486, 487, 731, 935, 1109, 1476
AsuC2I CCSGG 3 cut(s) 438, 647, 1266
AsuHPI GGTGA 4 cut(s) 12, 479, 1270, 1282
AvaII GGWCC 1 cut(s) 935
BaeGI GKGCMC 2 cut(s) 490, 977
BanI GGYRCC 1 cut(s) 1424
BanII GRGCYC 1 cut(s) 490
BarI GAAGNNNNNNTAC 2 cut(s) 165, 197
BbsI GAAGAC 1 cut(s) 183
BbvI GCAGC 3 cut(s) 50, 817, 1358
BccI CCATC 6 cut(s) 312, 686, 947, 970, 1127, 1331
BceAI ACGGC 1 cut(s) 105
BcgI CGANNNNNNTGC 4 cut(s) 773, 807, 822, 856
BciT130I CCWGG 3 cut(s) 683, 745, 1422
BclI TGATCA 1 cut(s) 1369
BcnI CCSGG 3 cut(s) 438, 647, 1266
BcoDI GTCTC 4 cut(s) 452, 583, 849, 1020
BfaI CTAG 3 cut(s) 1308, 1536, 1542
BfoI RGCGCY 1 cut(s) 653
BisI GCNGC 4 cut(s) 39, 831, 1165, 1347
BlsI GCNGC 4 cut(s) 40, 832, 1166, 1348
Bme1390I CCNGG 6 cut(s) 438, 647, 683, 745, 1266, 1422
Bme18I GGWCC 1 cut(s) 935
BmeRI GACNNNNNGTC 1 cut(s) 85
BmgT120I GGNCC 6 cut(s) 486, 487, 731, 935, 1109, 1476
BmiI GGNNCC 3 cut(s) 487, 488, 1426
BmrFI CCNGG 6 cut(s) 438, 647, 683, 745, 1266, 1422
BmrI ACTGGG 1 cut(s) 1440
BmsI GCATC 7 cut(s) 23, 391, 525, 646, 817, 1333, 1416
BmuI ACTGGG 1 cut(s) 1440
BpiI GAAGAC 1 cut(s) 183
BpmI CTGGAG 1 cut(s) 727
BpuMI CCSGG 3 cut(s) 438, 647, 1266
BsaBI GATNNNNATC 1 cut(s) 1118
BsaHI GRCGYC 3 cut(s) 253, 777, 1452
BsaJI CCNNGG 1 cut(s) 1510
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 220, 484, 496, 786
Bse1I ACTGG 4 cut(s) 478, 668, 1225, 1435
Bse3DI GCAATG 1 cut(s) 1122
Bse8I GATNNNNATC 1 cut(s) 1118
BseBI CCWGG 3 cut(s) 683, 745, 1422
BseDI CCNNGG 1 cut(s) 1510
BseGI GGATG 4 cut(s) 38, 382, 637, 962
BseJI GATNNNNATC 1 cut(s) 1118
BseLI CCNNNNNNNGG 5 cut(s) 29, 220, 484, 496, 786
BseMI GCAATG 1 cut(s) 1122
BseMII CTCAG 4 cut(s) 98, 387, 701, 786
BseNI ACTGG 4 cut(s) 478, 668, 1225, 1435
BseSI GKGCMC 2 cut(s) 490, 977
BseXI GCAGC 3 cut(s) 50, 817, 1358
Bsh1236I CGCG 2 cut(s) 849, 1178
BshFI GGCC 6 cut(s) 319, 488, 667, 732, 1110, 1477
BshNI GGYRCC 1 cut(s) 1424
BsiSI CCGG 4 cut(s) 14, 438, 646, 1266
BslFI GGGAC 3 cut(s) 117, 1162, 1448
BslI CCNNNNNNNGG 5 cut(s) 29, 220, 484, 496, 786
BsmAI GTCTC 4 cut(s) 452, 583, 849, 1020
BsmBI CGTCTC 2 cut(s) 849, 1020
BsmFI GGGAC 3 cut(s) 117, 1162, 1448
BsmI GAATGC 1 cut(s) 833
BsnI GGCC 6 cut(s) 319, 488, 667, 732, 1110, 1477
Bsp120I GGGCCC 1 cut(s) 486
Bsp1286I GDGCHC 2 cut(s) 490, 977
Bsp143I GATC 7 cut(s) 6, 205, 292, 758, 1369, 1461, 1570
Bsp68I TCGCGA 1 cut(s) 849
BspANI GGCC 6 cut(s) 319, 488, 667, 732, 1110, 1477
BspCNI CTCAG 4 cut(s) 97, 388, 702, 785
BspFNI CGCG 2 cut(s) 849, 1178
BspHI TCATGA 2 cut(s) 870, 1573
BspLI GGNNCC 3 cut(s) 487, 488, 1426
BspPI GGATC 3 cut(s) 213, 300, 1456
BspT107I GGYRCC 1 cut(s) 1424
BsrDI GCAATG 1 cut(s) 1122
BsrI ACTGG 4 cut(s) 478, 668, 1225, 1435
BssECI CCNNGG 1 cut(s) 1510
BssMI GATC 7 cut(s) 6, 205, 292, 758, 1369, 1461, 1570
BssNI GRCGYC 3 cut(s) 253, 777, 1452
Bst2UI CCWGG 3 cut(s) 683, 745, 1422
Bst4CI ACNGT 6 cut(s) 103, 391, 1153, 1247, 1511, 1562
Bst6I CTCTTC 2 cut(s) 267, 1217
BstACI GRCGYC 3 cut(s) 253, 777, 1452
BstAPI GCANNNNNTGC 1 cut(s) 1352
BstC8I GCNNGC 3 cut(s) 141, 514, 796
BstDEI CTNAG 4 cut(s) 84, 396, 710, 772
BstDSI CCRYGG 1 cut(s) 1510
BstF5I GGATG 4 cut(s) 38, 382, 637, 962
BstFNI CGCG 2 cut(s) 849, 1178
BstH2I RGCGCY 1 cut(s) 653
BstHHI GCGC 3 cut(s) 38, 652, 1061
BstKTI GATC 7 cut(s) 9, 208, 295, 761, 1372, 1464, 1573
BstMAI GTCTC 4 cut(s) 452, 583, 849, 1020
BstMBI GATC 7 cut(s) 6, 205, 292, 758, 1369, 1461, 1570
BstMWI GCNNNNNNNGC 4 cut(s) 347, 518, 1352, 1483
BstNI CCWGG 3 cut(s) 683, 745, 1422
BstSCI CCNGG 6 cut(s) 436, 645, 681, 743, 1264, 1420
BstSLI GKGCMC 2 cut(s) 490, 977
BstUI CGCG 2 cut(s) 849, 1178
BstV1I GCAGC 3 cut(s) 50, 817, 1358
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 6 cut(s) 319, 488, 667, 732, 1110, 1477
BtgI CCRYGG 1 cut(s) 1510
BtgZI GCGATG 2 cut(s) 502, 966
BtsCI GGATG 4 cut(s) 38, 382, 637, 962
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 5 cut(s) 67, 172, 393, 1061, 1428
BtuMI TCGCGA 1 cut(s) 849
Cac8I GCNNGC 3 cut(s) 141, 514, 796
CciI TCATGA 2 cut(s) 870, 1573
CfoI GCGC 3 cut(s) 38, 652, 1061
Cfr13I GGNCC 6 cut(s) 486, 487, 731, 935, 1109, 1476
CseI GACGC 5 cut(s) 89, 242, 785, 1002, 1441
Csp6I GTAC 4 cut(s) 481, 696, 926, 1228
CspCI CAANNNNNGTGG 2 cut(s) 1492, 1527
CviAII CATG 7 cut(s) 191, 308, 871, 970, 992, 1129, 1574
CviQI GTAC 4 cut(s) 481, 696, 926, 1228
DdeI CTNAG 4 cut(s) 84, 396, 710, 772
DpnI GATC 7 cut(s) 8, 207, 294, 760, 1371, 1463, 1572
DpnII GATC 7 cut(s) 6, 205, 292, 758, 1369, 1461, 1570
DriI GACNNNNNGTC 1 cut(s) 85
Eam1104I CTCTTC 2 cut(s) 267, 1217
Eam1105I GACNNNNNGTC 1 cut(s) 85
EarI CTCTTC 2 cut(s) 267, 1217
EciI GGCGGA 1 cut(s) 176
Eco147I AGGCCT 1 cut(s) 319
Eco24I GRGCYC 1 cut(s) 490
Eco47I GGWCC 1 cut(s) 935
Eco57I CTGAAG 1 cut(s) 708
EcoO109I RGGNCCY 2 cut(s) 486, 731
EcoRII CCWGG 3 cut(s) 681, 743, 1420
EcoT38I GRGCYC 1 cut(s) 490
Esp3I CGTCTC 2 cut(s) 849, 1020
FaeI CATG 7 cut(s) 194, 311, 874, 973, 995, 1132, 1577
FalI AAGNNNNNCTT 2 cut(s) 924, 956
FaqI GGGAC 3 cut(s) 117, 1162, 1448
FatI CATG 7 cut(s) 190, 307, 870, 969, 991, 1128, 1573
FauI CCCGC 4 cut(s) 18, 144, 338, 346
FbaI TGATCA 1 cut(s) 1369
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 4 cut(s) 39, 831, 1165, 1347
FokI GGATG 4 cut(s) 45, 369, 624, 949
FriOI GRGCYC 1 cut(s) 490
Fsp4HI GCNGC 4 cut(s) 39, 831, 1165, 1347
FspBI CTAG 3 cut(s) 1308, 1536, 1542
FspI TGCGCA 2 cut(s) 37, 1060
GlaI GCGC 3 cut(s) 37, 651, 1060
GluI GCNGC 4 cut(s) 39, 831, 1165, 1347
GsuI CTGGAG 1 cut(s) 727
HaeII RGCGCY 1 cut(s) 653
HaeIII GGCC 6 cut(s) 319, 488, 667, 732, 1110, 1477
HapII CCGG 4 cut(s) 14, 438, 646, 1266
HgaI GACGC 5 cut(s) 89, 242, 785, 1002, 1441
HhaI GCGC 3 cut(s) 38, 652, 1061
Hin1I GRCGYC 3 cut(s) 253, 777, 1452
Hin1II CATG 7 cut(s) 194, 311, 874, 973, 995, 1132, 1577
Hin6I GCGC 3 cut(s) 36, 650, 1059
HinP1I GCGC 3 cut(s) 36, 650, 1059
HincII GTYRAC 2 cut(s) 1188, 1300
HindII GTYRAC 2 cut(s) 1188, 1300
HindIII AAGCTT 1 cut(s) 1203
HinfI GANTC 8 cut(s) 17, 240, 326, 460, 1051, 1172, 1184, 1253
HpaII CCGG 4 cut(s) 14, 438, 646, 1266
HphI GGTGA 4 cut(s) 12, 479, 1270, 1282
Hpy166II GTNNAC 5 cut(s) 154, 280, 1188, 1300, 1514
Hpy188I TCNGA 6 cut(s) 234, 245, 663, 711, 775, 1252
Hpy8I GTNNAC 5 cut(s) 154, 280, 1188, 1300, 1514
HpyAV CCTTC 5 cut(s) 361, 722, 1045, 1147, 1475
HpyCH4III ACNGT 6 cut(s) 103, 391, 1153, 1247, 1511, 1562
HpyCH4IV ACGT 3 cut(s) 147, 300, 547
HpyCH4V TGCA 7 cut(s) 128, 737, 833, 986, 1346, 1486, 1503
HpyF10VI GCNNNNNNNGC 4 cut(s) 347, 518, 1352, 1483
HpyF3I CTNAG 4 cut(s) 84, 396, 710, 772
HpySE526I ACGT 3 cut(s) 147, 300, 547
Hsp92I GRCGYC 3 cut(s) 253, 777, 1452
Hsp92II CATG 7 cut(s) 194, 311, 874, 973, 995, 1132, 1577
HspAI GCGC 3 cut(s) 36, 650, 1059
Ksp22I TGATCA 1 cut(s) 1369
Kzo9I GATC 7 cut(s) 6, 205, 292, 758, 1369, 1461, 1570
LmnI GCTCC 2 cut(s) 439, 907
Lsp1109I GCAGC 3 cut(s) 50, 817, 1358
LweI GCATC 7 cut(s) 23, 391, 525, 646, 817, 1333, 1416
MaeI CTAG 3 cut(s) 1308, 1536, 1542
MaeII ACGT 3 cut(s) 147, 300, 547
MaeIII GTNAC 4 cut(s) 391, 473, 1288, 1562
MalI GATC 7 cut(s) 8, 207, 294, 760, 1371, 1463, 1572
MboI GATC 7 cut(s) 6, 205, 292, 758, 1369, 1461, 1570
MboII GAAGA 9 cut(s) 77, 185, 188, 284, 582, 701, 886, 1132, 1204
MfeI CAATTG 1 cut(s) 1471
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 2 cut(s) 490, 977
MluCI AATT 3 cut(s) 115, 1338, 1471
MlyI GAGTC 3 cut(s) 454, 1166, 1193
MmeI TCCRAC 1 cut(s) 568
MroXI GAANNNNTTC 1 cut(s) 239
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 1 cut(s) 1127
MspA1I CMGCKG 3 cut(s) 139, 375, 1295
MspI CCGG 4 cut(s) 14, 438, 646, 1266
MspR9I CCNGG 6 cut(s) 438, 647, 683, 745, 1266, 1422
MunI CAATTG 1 cut(s) 1471
Mva1269I GAATGC 1 cut(s) 833
MvaI CCWGG 3 cut(s) 683, 745, 1422
MvnI CGCG 2 cut(s) 849, 1178
MwoI GCNNNNNNNGC 4 cut(s) 347, 518, 1352, 1483
NciI CCSGG 3 cut(s) 438, 647, 1266
NdeII GATC 7 cut(s) 6, 205, 292, 758, 1369, 1461, 1570
NlaIII CATG 7 cut(s) 194, 311, 874, 973, 995, 1132, 1577
NlaIV GGNNCC 3 cut(s) 487, 488, 1426
NmuCI GTSAC 3 cut(s) 391, 1288, 1562
NruI TCGCGA 1 cut(s) 849
NsbI TGCGCA 2 cut(s) 37, 1060
PagI TCATGA 2 cut(s) 870, 1573
PceI AGGCCT 1 cut(s) 319
PctI GAATGC 1 cut(s) 833
PdmI GAANNNNTTC 1 cut(s) 239
PfeI GAWTC 5 cut(s) 17, 240, 326, 1051, 1253
PflMI CCANNNNNTGG 1 cut(s) 786
PkrI GCNGC 4 cut(s) 40, 832, 1166, 1348
PleI GAGTC 3 cut(s) 454, 1166, 1192
PpsI GAGTC 3 cut(s) 454, 1166, 1192
Psp1406I AACGTT 1 cut(s) 547
Psp6I CCWGG 3 cut(s) 681, 743, 1420
PspGI CCWGG 3 cut(s) 681, 743, 1420
PspN4I GGNNCC 3 cut(s) 487, 488, 1426
PspOMI GGGCCC 1 cut(s) 486
PspPI GGNCC 6 cut(s) 486, 487, 731, 935, 1109, 1476
PsuI RGATCY 1 cut(s) 205
RruI TCGCGA 1 cut(s) 849
RsaI GTAC 4 cut(s) 482, 697, 927, 1229
RsaNI GTAC 4 cut(s) 481, 696, 926, 1228
RseI CAYNNNNRTG 1 cut(s) 1127
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 4 cut(s) 39, 831, 1165, 1347
Sau3AI GATC 7 cut(s) 6, 205, 292, 758, 1369, 1461, 1570
Sau96I GGNCC 6 cut(s) 486, 487, 731, 935, 1109, 1476
SchI GAGTC 3 cut(s) 454, 1166, 1193
ScrFI CCNGG 6 cut(s) 438, 647, 683, 745, 1266, 1422
SduI GDGCHC 2 cut(s) 490, 977
SfaNI GCATC 7 cut(s) 23, 391, 525, 646, 817, 1333, 1416
SinI GGWCC 1 cut(s) 935
SmiMI CAYNNNNRTG 1 cut(s) 1127
Sse9I AATT 3 cut(s) 115, 1338, 1471
SseBI AGGCCT 1 cut(s) 319
SspMI CTAG 3 cut(s) 1308, 1536, 1542
StuI AGGCCT 1 cut(s) 319
StyD4I CCNGG 6 cut(s) 436, 645, 681, 743, 1264, 1420
TaaI ACNGT 6 cut(s) 103, 391, 1153, 1247, 1511, 1562
TaiI ACGT 3 cut(s) 150, 303, 550
TaqI TCGA 2 cut(s) 5, 894
TasI AATT 3 cut(s) 115, 1338, 1471
TauI GCSGC 1 cut(s) 1167
TfiI GAWTC 5 cut(s) 17, 240, 326, 1051, 1253
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 5 cut(s) 67, 172, 400, 1068, 1435
TseFI GTSAC 3 cut(s) 391, 1288, 1562
TseI GCWGC 3 cut(s) 38, 830, 1346
Tsp45I GTSAC 3 cut(s) 391, 1288, 1562
TspDTI ATGAA 7 cut(s) 828, 859, 870, 887, 1027, 1044, 1215
TspGWI ACGGA 2 cut(s) 188, 827
TspRI CASTG 5 cut(s) 67, 172, 400, 1068, 1435
Van91I CCANNNNNTGG 1 cut(s) 786
VpaK11BI GGWCC 1 cut(s) 935
XmiI GTMKAC 1 cut(s) 279
XmnI GAANNNNTTC 1 cut(s) 239
XspI CTAG 3 cut(s) 1308, 1536, 1542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.