Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003284

Physical Location & Seq

Genomic Coordinates Reverse (-)

82550572 .. 82551036

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35143

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGACCATCAGTGCCATGTTCCCCTTCTTCAAATCGACTGTGTTTTCAACCGACATAGATGCTGCGTTTGAGGCAGCAACAAAATATGAAGCTTACCTCTTCAAGGACAACCAATATGCTCTTATAAACTACGGTTCTGGTAGTGCCTGCCTCATCCACCTCCAGCTCATCATTGACAGCTTTCATGGTTTGAGAAACACCATCTTTGCAAGTGGAATCGAGGCAGCGTTTGCTTCGCGCAGGACTAATGAGGCATACCTATTCAAAAGAGATTCCTACGCACTCATCAACTTTTCTCTTGGGAACACTAATGACTACATTATCGGTGGCGTCAAGAAGATCCTTCCCAATTGGCCATCTCTGCAACCCATCTTGCCTAGCAAAAACTATGGACTTGACGTTCACAATCACTCTAGCCTTGGTGTTGATGATGTTGGCCGTAACCAAGATCATGATGAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemopexin

Protein Analysis

154

Amino Acids

17.18

Weight (kDa)

5.63

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0076401 RchiOBHm_Chr5g0076491 RchiOBHm_Chr5g0076541 RchiOBHm_Chr5g0076681 RchiOBHm_Chr5g0076801
rosa_multiflora	Rmu_sc0000369.1_g000005 Rmu_sc0000369.1_g000007 Rmu_sc0000369.1_g000008 Rmu_sc0000369.1_g000010 Rmu_sc0002400.1_g000007 Rmu_sc0006747.1_g000015 Rmu_ssc0000184.1_g000027 Rmu_ssc0000184.1_g000037
rosa_roxburghii	Rroxscaffold_1G00005320 Rroxscaffold_1G00005330 Rroxscaffold_1G00005350 Rroxscaffold_1G00005390 Rroxscaffold_1G00005410
rosa_rugosa	Rorug05G0447500.1 Rorug05G0447600 Rorug05G0447700 Rorug05G0448600 Rorug05G0448800 Rorug05G0448900 Rorug05G0449000 Rorug05G0449100
rosa_samantha	Rh5AG502400 Rh5AG503500 Rh5BG524200 Rh5CG547800 Rh5DG536800 Rh5DG536900 Rh5DG537000 Rh5DG537100
rosa_wichuraiana	Rw5G046680 Rw5G046690 Rw5G046700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	125
AccII	CGCG	1 cut(s)	238
AclWI	GGATC	1 cut(s)	334
AcoI	YGGCCR	2 cut(s)	353, 436
AcyI	GRCGYC	1 cut(s)	330
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	4 cut(s)	31, 48, 103, 265
AloI	GAACNNNNNNTCC	2 cut(s)	384, 416
AluBI	AGCT	3 cut(s)	92, 166, 180
AluI	AGCT	3 cut(s)	92, 166, 180
AlwI	GGATC	1 cut(s)	334
AoxI	GGCC	2 cut(s)	353, 436
ApeKI	GCWGC	3 cut(s)	62, 74, 224
AspLEI	GCGC	1 cut(s)	240
BalI	TGGCCA	1 cut(s)	355
BbvI	GCAGC	3 cut(s)	49, 86, 236
BccI	CCATC	4 cut(s)	14, 209, 364, 377
BceAI	ACGGC	1 cut(s)	423
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BfaI	CTAG	2 cut(s)	378, 414
BisI	GCNGC	3 cut(s)	63, 75, 225
BlsI	GCNGC	3 cut(s)	64, 76, 226
BmsI	GCATC	1 cut(s)	49
BpmI	CTGGAG	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	418
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	418
BseGI	GGATG	1 cut(s)	153
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseXI	GCAGC	3 cut(s)	49, 86, 236
Bsh1236I	CGCG	1 cut(s)	238
BshFI	GGCC	2 cut(s)	355, 438
BslI	CCNNNNNNNGG	1 cut(s)	103
BsnI	GGCC	2 cut(s)	355, 438
Bsp143I	GATC	2 cut(s)	339, 448
BspANI	GGCC	2 cut(s)	355, 438
BspFNI	CGCG	1 cut(s)	238
BspHI	TCATGA	1 cut(s)	451
BspPI	GGATC	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	418
BssMI	GATC	2 cut(s)	339, 448
BssNI	GRCGYC	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	418
Bst4CI	ACNGT	2 cut(s)	40, 134
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	330
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	148
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	153
BstFNI	CGCG	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	2 cut(s)	342, 451
BstMBI	GATC	2 cut(s)	339, 448
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 230, 361
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	3 cut(s)	49, 86, 236
BstX2I	RGATCY	1 cut(s)	339
BstYI	RGATCY	1 cut(s)	339
BsuRI	GGCC	2 cut(s)	355, 438
BtsCI	GGATG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	148
CciI	TCATGA	1 cut(s)	451
CfoI	GCGC	1 cut(s)	240
CseI	GACGC	1 cut(s)	319
CviAII	CATG	3 cut(s)	16, 185, 452
CviJI	RGCY	6 cut(s)	92, 166, 180, 355, 417, 438
CviKI_1	RGCY	6 cut(s)	92, 166, 180, 355, 417, 438
DpnI	GATC	2 cut(s)	341, 450
DpnII	GATC	2 cut(s)	339, 448
EaeI	YGGCCR	2 cut(s)	353, 436
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	418
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	418
ErhI	CCWWGG	1 cut(s)	418
FaeI	CATG	3 cut(s)	19, 188, 455
FaiI	YATR	9 cut(s)	17, 56, 87, 117, 125, 186, 256, 390, 453
FatI	CATG	3 cut(s)	15, 184, 451
Fnu4HI	GCNGC	3 cut(s)	63, 75, 225
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	3 cut(s)	63, 75, 225
FspBI	CTAG	2 cut(s)	378, 414
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	3 cut(s)	63, 75, 225
GsuI	CTGGAG	1 cut(s)	146
HaeIII	GGCC	2 cut(s)	355, 438
HgaI	GACGC	1 cut(s)	319
HhaI	GCGC	1 cut(s)	240
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	3 cut(s)	19, 188, 455
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	2 cut(s)	216, 272
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188III	TCNNGA	2 cut(s)	334, 452
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	2 cut(s)	34, 353
HpyCH4III	ACNGT	2 cut(s)	40, 134
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	2 cut(s)	209, 364
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 230, 361
HpySE526I	ACGT	1 cut(s)	399
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	3 cut(s)	19, 188, 455
HspAI	GCGC	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	339, 448
LpnPI	CCDG	4 cut(s)	123, 160, 176, 226
Lsp1109I	GCAGC	3 cut(s)	49, 86, 236
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	2 cut(s)	378, 414
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	1 cut(s)	440
MalI	GATC	2 cut(s)	341, 450
MboI	GATC	2 cut(s)	339, 448
MboII	GAAGA	3 cut(s)	19, 91, 349
MfeI	CAATTG	1 cut(s)	349
MflI	RGATCY	1 cut(s)	339
MlsI	TGGCCA	1 cut(s)	355
MluCI	AATT	1 cut(s)	349
MluNI	TGGCCA	1 cut(s)	355
MnlI	CCTC	6 cut(s)	64, 107, 161, 170, 214, 244
Mox20I	TGGCCA	1 cut(s)	355
MscI	TGGCCA	1 cut(s)	355
Msp20I	TGGCCA	1 cut(s)	355
MunI	CAATTG	1 cut(s)	349
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	3 cut(s)	71, 230, 361
NdeII	GATC	2 cut(s)	339, 448
NlaIII	CATG	3 cut(s)	19, 188, 455
PagI	TCATGA	1 cut(s)	451
PfeI	GAWTC	2 cut(s)	216, 272
PkrI	GCNGC	3 cut(s)	64, 76, 226
PsiI	TTATAA	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	339
SatI	GCNGC	3 cut(s)	63, 75, 225
Sau3AI	GATC	2 cut(s)	339, 448
SetI	ASST	7 cut(s)	94, 99, 162, 168, 182, 261, 402
SfaNI	GCATC	1 cut(s)	49
Sse9I	AATT	1 cut(s)	349
SspMI	CTAG	2 cut(s)	378, 414
StyI	CCWWGG	1 cut(s)	418
TaaI	ACNGT	2 cut(s)	40, 134
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	2 cut(s)	35, 219
TasI	AATT	1 cut(s)	349
TfiI	GAWTC	2 cut(s)	216, 272
TscAI	CASTG	1 cut(s)	16
TseI	GCWGC	3 cut(s)	62, 74, 224
TspDTI	ATGAA	2 cut(s)	102, 173
TspRI	CASTG	1 cut(s)	16
XagI	CCTNNNNNAGG	1 cut(s)	101
XspI	CTAG	2 cut(s)	378, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.