Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000184.1

Orthogroup ID

OG0003284

Physical Location & Seq

Genomic Coordinates Forward (+)

147047 .. 147931

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000184.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atgtctatcccgccaaattcaccatggagaggatgcgcagcaaactaccctcaacctgtcgataaatatgtcgaatttgcagttcagtatttggtagaagctgtttattactctaattgccgtgttggagattccccactggctgacatcgagtacagaagcagcagtggagaagaagacatactccgccatgtgttccgttgggatcttaccccctatgaggaggtgtttcagaatggcttccaagcgaggcgtccagaaaacactactgacgaagactacttcaatctggaacagtacgtccatcatggcggtaggcctcttgattcccgccgacccgccacctatgcctttgttagcaccaaccttaacagcggctggcatcccactgtcactgtgactgtggaggaaatatttcgctatgagatatatgctcccggtggcatttgggttgctgagactcttggtgaccgttaccagtacccggcccaagatgaggtctcctttgttgccggcattgcccctcaatacattcgctctgtccaacgtttcaggcttgttcgtaacagaagatacacaagacgggagagacttgatcatcaaatcatactaaatgggaactacaatccacaatcgcatccataccggcagctcaacattcggaggccagtattttactacgtggctgaaaatggtacgaggcagcttctgactgtagcacttgggaagcccctgcaatctccaatcgagagaaacgatcagccgacaactctgacaccaccgactgtgagagctacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemopexin

Protein Analysis

266

Amino Acids

30.94

Weight (kDa)

6.61

Isoelectric Point (pI)

66.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0076401 RchiOBHm_Chr5g0076491 RchiOBHm_Chr5g0076541 RchiOBHm_Chr5g0076681 RchiOBHm_Chr5g0076801
rosa_multiflora	Rmu_sc0000369.1_g000005 Rmu_sc0000369.1_g000007 Rmu_sc0000369.1_g000008 Rmu_sc0000369.1_g000010 Rmu_sc0002400.1_g000007 Rmu_sc0006747.1_g000015 Rmu_ssc0000184.1_g000027 Rmu_ssc0000184.1_g000037
rosa_roxburghii	Rroxscaffold_1G00005320 Rroxscaffold_1G00005330 Rroxscaffold_1G00005350 Rroxscaffold_1G00005390 Rroxscaffold_1G00005410
rosa_rugosa	Rorug05G0447500.1 Rorug05G0447600 Rorug05G0447700 Rorug05G0448600 Rorug05G0448800 Rorug05G0448900 Rorug05G0449000 Rorug05G0449100
rosa_samantha	Rh5AG502400 Rh5AG503500 Rh5BG524200 Rh5CG547800 Rh5DG536800 Rh5DG536900 Rh5DG537000 Rh5DG537100
rosa_wichuraiana	Rw5G046680 Rw5G046690 Rw5G046700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	37
AciI	CCGC	6 cut(s)	11, 187, 312, 331, 339, 375
AclI	AACGTT	1 cut(s)	547
AclWI	GGATC	1 cut(s)	213
AcsI	RAATTY	2 cut(s)	16, 74
AcyI	GRCGYC	1 cut(s)	253
AfaI	GTAC	4 cut(s)	155, 299, 482, 697
AfiI	CCNNNNNNNGG	4 cut(s)	29, 220, 484, 496
AgsI	TTSAA	1 cut(s)	286
AloI	GAACNNNNNNTCC	2 cut(s)	285, 317
AluBI	AGCT	4 cut(s)	101, 652, 706, 794
AluI	AGCT	4 cut(s)	101, 652, 706, 794
Alw26I	GTCTC	3 cut(s)	452, 505, 583
AlwI	GGATC	1 cut(s)	213
AlwNI	CAGNNNCTG	2 cut(s)	378, 709
AoxI	GGCC	3 cut(s)	317, 486, 665
ApeKI	GCWGC	4 cut(s)	38, 162, 649, 703
ApoI	RAATTY	2 cut(s)	16, 74
Asp700I	GAANNNNTTC	2 cut(s)	239, 414
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	487
AsuC2I	CCSGG	2 cut(s)	438, 485
AsuHPI	GGTGA	2 cut(s)	12, 479
BarI	GAAGNNNNNNTAC	2 cut(s)	165, 197
BbsI	GAAGAC	2 cut(s)	183, 282
BbvI	GCAGC	4 cut(s)	50, 174, 661, 715
BccI	CCATC	1 cut(s)	312
BceAI	ACGGC	1 cut(s)	105
BclI	TGATCA	1 cut(s)	595
BcnI	CCSGG	2 cut(s)	438, 485
BcoDI	GTCTC	3 cut(s)	452, 505, 583
BfmI	CTRYAG	1 cut(s)	714
BisI	GCNGC	5 cut(s)	39, 163, 376, 650, 704
BlsI	GCNGC	5 cut(s)	40, 164, 377, 651, 705
Bme1390I	CCNGG	2 cut(s)	438, 485
BmgT120I	GGNCC	1 cut(s)	487
BmrFI	CCNGG	2 cut(s)	438, 485
BmsI	GCATC	3 cut(s)	23, 391, 646
BpiI	GAAGAC	2 cut(s)	183, 282
BpuMI	CCSGG	2 cut(s)	438, 485
BsaAI	YACGTR	1 cut(s)	682
BsaHI	GRCGYC	1 cut(s)	253
BsaI	GGTCTC	1 cut(s)	505
BsaJI	CCNNGG	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 220, 484, 496
Bse118I	RCCGGY	2 cut(s)	512, 645
Bse1I	ACTGG	3 cut(s)	144, 478, 668
Bse3DI	GCAATG	1 cut(s)	516
BseDI	CCNNGG	1 cut(s)	23
BseGI	GGATG	3 cut(s)	38, 382, 637
BseLI	CCNNNNNNNGG	4 cut(s)	29, 220, 484, 496
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	3 cut(s)	144, 478, 668
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	4 cut(s)	50, 174, 661, 715
BshFI	GGCC	3 cut(s)	319, 488, 667
BsiSI	CCGG	4 cut(s)	438, 485, 513, 646
BslI	CCNNNNNNNGG	4 cut(s)	29, 220, 484, 496
BsmAI	GTCTC	3 cut(s)	452, 505, 583
BsnI	GGCC	3 cut(s)	319, 488, 667
Bso31I	GGTCTC	1 cut(s)	505
Bsp143I	GATC	3 cut(s)	205, 595, 757
Bsp19I	CCATGG	1 cut(s)	23
BspACI	CCGC	6 cut(s)	11, 187, 312, 331, 339, 375
BspANI	GGCC	3 cut(s)	319, 488, 667
BspCNI	CTCAG	1 cut(s)	448
BspPI	GGATC	1 cut(s)	213
BspTNI	GGTCTC	1 cut(s)	505
BsrDI	GCAATG	1 cut(s)	516
BsrFI	RCCGGY	2 cut(s)	512, 645
BsrI	ACTGG	3 cut(s)	144, 478, 668
BssAI	RCCGGY	2 cut(s)	512, 645
BssECI	CCNNGG	1 cut(s)	23
BssMI	GATC	3 cut(s)	205, 595, 757
BssNI	GRCGYC	1 cut(s)	253
BssT1I	CCWWGG	1 cut(s)	23
Bst4CI	ACNGT	7 cut(s)	297, 391, 397, 403, 473, 715, 787
BstACI	GRCGYC	1 cut(s)	253
BstBAI	YACGTR	1 cut(s)	682
BstC8I	GCNNGC	2 cut(s)	380, 514
BstDEI	CTNAG	1 cut(s)	456
BstDSI	CCRYGG	1 cut(s)	23
BstEII	GGTNACC	1 cut(s)	467
BstF5I	GGATG	3 cut(s)	38, 382, 637
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	3 cut(s)	208, 598, 760
BstMAI	GTCTC	3 cut(s)	452, 505, 583
BstMBI	GATC	3 cut(s)	205, 595, 757
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 518
BstPI	GGTNACC	1 cut(s)	467
BstSCI	CCNGG	2 cut(s)	436, 483
BstSFI	CTRYAG	1 cut(s)	714
BstV1I	GCAGC	4 cut(s)	50, 174, 661, 715
BstV2I	GAAGAC	2 cut(s)	183, 282
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BsuRI	GGCC	3 cut(s)	319, 488, 667
BtgI	CCRYGG	1 cut(s)	23
BtsCI	GGATG	3 cut(s)	38, 382, 637
BtsI	GCAGTG	1 cut(s)	172
BtsIMutI	CAGTG	4 cut(s)	137, 172, 387, 393
Cac8I	GCNNGC	2 cut(s)	380, 514
CaiI	CAGNNNCTG	2 cut(s)	378, 709
CfoI	GCGC	1 cut(s)	38
Cfr10I	RCCGGY	2 cut(s)	512, 645
Cfr13I	GGNCC	1 cut(s)	487
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	4 cut(s)	154, 298, 481, 696
CviAII	CATG	3 cut(s)	24, 191, 308
CviQI	GTAC	4 cut(s)	154, 298, 481, 696
DdeI	CTNAG	1 cut(s)	456
DpnI	GATC	3 cut(s)	207, 597, 759
DpnII	GATC	3 cut(s)	205, 595, 757
EciI	GGCGGA	1 cut(s)	176
Eco130I	CCWWGG	1 cut(s)	23
Eco147I	AGGCCT	1 cut(s)	319
Eco31I	GGTCTC	1 cut(s)	505
Eco91I	GGTNACC	1 cut(s)	467
EcoO65I	GGTNACC	1 cut(s)	467
EcoT14I	CCWWGG	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	3 cut(s)	27, 194, 311
FatI	CATG	3 cut(s)	23, 190, 307
FauI	CCCGC	3 cut(s)	18, 338, 346
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	5 cut(s)	39, 163, 376, 650, 704
FokI	GGATG	3 cut(s)	45, 369, 624
Fsp4HI	GCNGC	5 cut(s)	39, 163, 376, 650, 704
FspI	TGCGCA	1 cut(s)	37
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	5 cut(s)	39, 163, 376, 650, 704
HaeIII	GGCC	3 cut(s)	319, 488, 667
HapII	CCGG	4 cut(s)	438, 485, 513, 646
HgaI	GACGC	1 cut(s)	242
HhaI	GCGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	253
Hin1II	CATG	3 cut(s)	27, 194, 311
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HinfI	GANTC	3 cut(s)	131, 326, 460
HpaII	CCGG	4 cut(s)	438, 485, 513, 646
HphI	GGTGA	2 cut(s)	12, 479
Hpy188I	TCNGA	4 cut(s)	234, 663, 711, 774
Hpy188III	TCNNGA	4 cut(s)	257, 290, 323, 748
HpyCH4III	ACNGT	7 cut(s)	297, 391, 397, 403, 473, 715, 787
HpyCH4IV	ACGT	3 cut(s)	300, 547, 681
HpyCH4V	TGCA	2 cut(s)	80, 736
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 518
HpyF3I	CTNAG	1 cut(s)	456
HpySE526I	ACGT	3 cut(s)	300, 547, 681
Hsp92I	GRCGYC	1 cut(s)	253
Hsp92II	CATG	3 cut(s)	27, 194, 311
HspAI	GCGC	1 cut(s)	36
KroI	GCCGGC	1 cut(s)	512
KroNI	GCCGGC	1 cut(s)	514
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	3 cut(s)	205, 595, 757
LmnI	GCTCC	1 cut(s)	439
Lsp1109I	GCAGC	4 cut(s)	50, 174, 661, 715
LweI	GCATC	3 cut(s)	23, 391, 646
MaeII	ACGT	3 cut(s)	300, 547, 681
MaeIII	GTNAC	5 cut(s)	391, 397, 467, 473, 563
MalI	GATC	3 cut(s)	207, 597, 759
MboI	GATC	3 cut(s)	205, 595, 757
MboII	GAAGA	4 cut(s)	185, 188, 287, 582
MflI	RGATCY	1 cut(s)	205
MluCI	AATT	3 cut(s)	16, 74, 115
MlyI	GAGTC	1 cut(s)	454
MmeI	TCCRAC	2 cut(s)	106, 568
MroNI	GCCGGC	1 cut(s)	512
MroXI	GAANNNNTTC	2 cut(s)	239, 414
MseI	TTAA	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	375
MspI	CCGG	4 cut(s)	438, 485, 513, 646
MspR9I	CCNGG	2 cut(s)	438, 485
MwoI	GCNNNNNNNGC	2 cut(s)	347, 518
NaeI	GCCGGC	1 cut(s)	514
NciI	CCSGG	2 cut(s)	438, 485
NcoI	CCATGG	1 cut(s)	23
NdeII	GATC	3 cut(s)	205, 595, 757
NgoMIV	GCCGGC	1 cut(s)	512
NlaIII	CATG	3 cut(s)	27, 194, 311
NmuCI	GTSAC	3 cut(s)	391, 397, 467
NsbI	TGCGCA	1 cut(s)	37
PceI	AGGCCT	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	1 cut(s)	753
PdiI	GCCGGC	1 cut(s)	514
PdmI	GAANNNNTTC	2 cut(s)	239, 414
PfeI	GAWTC	2 cut(s)	131, 326
PkrI	GCNGC	5 cut(s)	40, 164, 377, 651, 705
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
Ppu21I	YACGTR	1 cut(s)	682
Psp1406I	AACGTT	1 cut(s)	547
PspEI	GGTNACC	1 cut(s)	467
PspPI	GGNCC	1 cut(s)	487
PstNI	CAGNNNCTG	2 cut(s)	378, 709
PsuI	RGATCY	1 cut(s)	205
RsaI	GTAC	4 cut(s)	155, 299, 482, 697
RsaNI	GTAC	4 cut(s)	154, 298, 481, 696
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	5 cut(s)	39, 163, 376, 650, 704
Sau3AI	GATC	3 cut(s)	205, 595, 757
Sau96I	GGNCC	1 cut(s)	487
SchI	GAGTC	1 cut(s)	454
ScrFI	CCNGG	2 cut(s)	438, 485
SfaNI	GCATC	3 cut(s)	23, 391, 646
SfcI	CTRYAG	1 cut(s)	714
Sse9I	AATT	3 cut(s)	16, 74, 115
SseBI	AGGCCT	1 cut(s)	319
SsiI	CCGC	6 cut(s)	11, 187, 312, 331, 339, 375
SspI	AATATT	1 cut(s)	414
StuI	AGGCCT	1 cut(s)	319
StyD4I	CCNGG	2 cut(s)	436, 483
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	7 cut(s)	297, 391, 397, 403, 473, 715, 787
TaiI	ACGT	3 cut(s)	303, 550, 684
TaqI	TCGA	4 cut(s)	60, 72, 150, 747
TasI	AATT	3 cut(s)	16, 74, 115
TatI	WGTACW	1 cut(s)	153
TauI	GCSGC	1 cut(s)	378
TfiI	GAWTC	2 cut(s)	131, 326
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	4 cut(s)	144, 172, 394, 400
TseFI	GTSAC	3 cut(s)	391, 397, 467
TseI	GCWGC	4 cut(s)	38, 162, 649, 703
Tsp45I	GTSAC	3 cut(s)	391, 397, 467
TspGWI	ACGGA	1 cut(s)	188
TspRI	CASTG	4 cut(s)	144, 172, 394, 400
XapI	RAATTY	2 cut(s)	16, 74
XcmI	CCANNNNNNNNNTGG	1 cut(s)	21
XmnI	GAANNNNTTC	2 cut(s)	239, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.