Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002400.1

Orthogroup ID

OG0003284

Physical Location & Seq

Genomic Coordinates Forward (+)

25392 .. 26704

Gene Structure 1313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002400.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

atgtatgtggaagtatatcgttatgagatatatgctcctggtggcatttgggttgctgagactcttggtgatcggcacctgtacccttctcaagacgaggtctcttttgttgcgggcattgcccctcaatacattcgctctgcccaacgcttcaggcttgttagtgatggaaggtatacaacacgggagagactcggcaatgtaataagagtaaatgggaacttcaatccccgatcgcacccatcacggttgctcaacattcggaggccagtctttgactacgtgtctgaaaatggtacgacgcagcttctaacccttagcatttgccgatcccctgcaatctccgggctacaactcgctgccaccaacaataatttccgagcccctgccatctctgggctacaactcgctgccatcaaagataatttcactaccacagattggtatgctggcgatgtggctaactatgaaagctacattgatgctgcattccgttcgtctcgcggaaatgaagcctatctattcatgaagaacgagtatgtgctattggactatgctcctgggggcacaaacgacaaggtattgaacggaccgcttcttatctgcgatgggtatccatctctcaagggcacagtctttacagaacatggtatagactctgctttcgggtctcacgatcgggatgaagcttttatcttctctgggaatctctctgcacacattaacttcgcactacacaccacaaatgacaagataatcaaagggccgattagcatctctgccatgttccccttcttgagaaaaacggagtttgaaagcggcatagacgccgcgtttgagtcaatgacaaaatatgaagcttacctcttcaaagacgacaagtatgctcttataaactacggttctggtactgcgcgcctcatccatgtcaagcccatcggcgatggctatcctagcttgaaaaacaccatctttgcaagtggaatcgaggcagcgcttgcttcacacaggtataatgaggcataccttttcaaaggagattcctactgctggatcaactttgctcctggcaccacaaatgacttcatcggtggagtgaagcaaatccgtcccaattggccttccctccgaagcatcttgcctcgcaaataccatggactggacgttcacaatcacacttcacactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemopexin

Protein Analysis

395

Amino Acids

44.14

Weight (kDa)

7.2

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0076401 RchiOBHm_Chr5g0076491 RchiOBHm_Chr5g0076541 RchiOBHm_Chr5g0076681 RchiOBHm_Chr5g0076801
rosa_multiflora	Rmu_sc0000369.1_g000005 Rmu_sc0000369.1_g000007 Rmu_sc0000369.1_g000008 Rmu_sc0000369.1_g000010 Rmu_sc0002400.1_g000007 Rmu_sc0006747.1_g000015 Rmu_ssc0000184.1_g000027 Rmu_ssc0000184.1_g000037
rosa_roxburghii	Rroxscaffold_1G00005320 Rroxscaffold_1G00005330 Rroxscaffold_1G00005350 Rroxscaffold_1G00005390 Rroxscaffold_1G00005410
rosa_rugosa	Rorug05G0447500.1 Rorug05G0447600 Rorug05G0447700 Rorug05G0448600 Rorug05G0448800 Rorug05G0448900 Rorug05G0449000 Rorug05G0449100
rosa_samantha	Rh5AG502400 Rh5AG503500 Rh5BG524200 Rh5CG547800 Rh5DG536800 Rh5DG536900 Rh5DG537000 Rh5DG537100
rosa_wichuraiana	Rw5G046680 Rw5G046690 Rw5G046700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	893
AccB1I	GGYRCC	2 cut(s)	75, 1070
AccB7I	CCANNNNNTGG	2 cut(s)	441, 1159
AccI	GTMKAC	1 cut(s)	176
AccII	CGCG	3 cut(s)	504, 833, 916
AciI	CCGC	5 cut(s)	113, 504, 593, 819, 831
AclWI	GGATC	2 cut(s)	324, 1061
AcuI	CTGAAG	1 cut(s)	136
AcyI	GRCGYC	1 cut(s)	828
AfaI	GTAC	3 cut(s)	83, 298, 910
AfeI	AGCGCT	1 cut(s)	996
AfiI	CCNNNNNNNGG	4 cut(s)	396, 441, 1050, 1159
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	6 cut(s)	226, 586, 815, 871, 961, 1033
AhdI	GACNNNNNGTC	1 cut(s)	283
AjnI	CCWGG	3 cut(s)	37, 559, 1066
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
AloI	GAACNNNNNNTCC	2 cut(s)	1149, 1181
AluBI	AGCT	5 cut(s)	307, 474, 689, 860, 957
AluI	AGCT	5 cut(s)	307, 474, 689, 860, 957
Alw26I	GTCTC	5 cut(s)	53, 106, 184, 504, 675
AlwI	GGATC	2 cut(s)	324, 1061
Aor51HI	AGCGCT	1 cut(s)	996
AoxI	GGCC	3 cut(s)	266, 764, 1118
ApeKI	GCWGC	5 cut(s)	304, 359, 410, 485, 992
ArsI	GACNNNNNNTTYG	4 cut(s)	647, 679, 818, 850
AspLEI	GCGC	3 cut(s)	916, 918, 997
AspS9I	GGNCC	2 cut(s)	590, 764
AsuC2I	CCSGG	1 cut(s)	346
AsuHPI	GGTGA	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	590
BaeGI	GKGCMC	2 cut(s)	569, 632
BanI	GGYRCC	2 cut(s)	75, 1070
BanII	GRGCYC	1 cut(s)	385
BbvI	GCAGC	5 cut(s)	316, 346, 397, 472, 1004
BccI	CCATC	9 cut(s)	161, 250, 398, 422, 602, 625, 938, 944, 977
BcgI	CGANNNNNNTGC	4 cut(s)	477, 511, 866, 900
BciT130I	CCWGG	3 cut(s)	39, 561, 1068
BciVI	GTATCC	1 cut(s)	624
BcnI	CCSGG	1 cut(s)	346
BcoDI	GTCTC	5 cut(s)	53, 106, 184, 504, 675
BfaI	CTAG	2 cut(s)	954, 1186
BfoI	RGCGCY	1 cut(s)	998
BfuI	GTATCC	1 cut(s)	624
BisI	GCNGC	7 cut(s)	305, 360, 411, 486, 820, 831, 993
BlsI	GCNGC	7 cut(s)	306, 361, 412, 487, 821, 832, 994
Bme1390I	CCNGG	4 cut(s)	39, 346, 561, 1068
Bme18I	GGWCC	1 cut(s)	590
BmeRI	GACNNNNNGTC	1 cut(s)	283
BmgT120I	GGNCC	2 cut(s)	590, 764
BmiI	GGNNCC	2 cut(s)	77, 1072
BmrFI	CCNGG	4 cut(s)	39, 346, 561, 1068
BmsI	GCATC	3 cut(s)	472, 783, 1143
Bpu10I	CCTNAGC	1 cut(s)	317
BpuEI	CTTGAG	3 cut(s)	75, 608, 817
BpuMI	CCSGG	1 cut(s)	346
BsaAI	YACGTR	1 cut(s)	283
BsaBI	GATNNNNATC	3 cut(s)	612, 773, 948
BsaHI	GRCGYC	1 cut(s)	828
BsaI	GGTCTC	2 cut(s)	106, 675
BsaJI	CCNNGG	2 cut(s)	560, 1153
Bsc4I	CCNNNNNNNGG	4 cut(s)	396, 441, 1050, 1159
Bse1I	ACTGG	2 cut(s)	269, 1164
Bse3DI	GCAATG	2 cut(s)	117, 205
Bse8I	GATNNNNATC	3 cut(s)	612, 773, 948
BseBI	CCWGG	3 cut(s)	39, 561, 1068
BseDI	CCNNGG	2 cut(s)	560, 1153
BseGI	GGATG	2 cut(s)	688, 921
BseJI	GATNNNNATC	3 cut(s)	612, 773, 948
BseLI	CCNNNNNNNGG	4 cut(s)	396, 441, 1050, 1159
BseMI	GCAATG	2 cut(s)	117, 205
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	2 cut(s)	269, 1164
BsePI	GCGCGC	1 cut(s)	914
BseSI	GKGCMC	2 cut(s)	569, 632
BseXI	GCAGC	5 cut(s)	316, 346, 397, 472, 1004
BsgI	GTGCAG	1 cut(s)	699
Bsh1236I	CGCG	3 cut(s)	504, 833, 916
Bsh1285I	CGRYCG	2 cut(s)	236, 679
BshFI	GGCC	3 cut(s)	268, 766, 1120
BshNI	GGYRCC	2 cut(s)	75, 1070
BsiEI	CGRYCG	2 cut(s)	236, 679
BsiSI	CCGG	1 cut(s)	345
BslFI	GGGAC	1 cut(s)	1095
BslI	CCNNNNNNNGG	4 cut(s)	396, 441, 1050, 1159
BsmAI	GTCTC	5 cut(s)	53, 106, 184, 504, 675
BsmBI	CGTCTC	1 cut(s)	504
BsmFI	GGGAC	1 cut(s)	1095
BsmI	GAATGC	1 cut(s)	488
BsnI	GGCC	3 cut(s)	268, 766, 1120
Bso31I	GGTCTC	2 cut(s)	106, 675
Bsp1286I	GDGCHC	3 cut(s)	385, 569, 632
Bsp143I	GATC	5 cut(s)	70, 233, 329, 676, 1053
Bsp19I	CCATGG	1 cut(s)	1153
BspACI	CCGC	5 cut(s)	113, 504, 593, 819, 831
BspANI	GGCC	3 cut(s)	268, 766, 1120
BspCNI	CTCAG	1 cut(s)	49
BspFNI	CGCG	3 cut(s)	504, 833, 916
BspHI	TCATGA	1 cut(s)	525
BspLI	GGNNCC	2 cut(s)	77, 1072
BspPI	GGATC	2 cut(s)	324, 1061
BspT107I	GGYRCC	2 cut(s)	75, 1070
BspTNI	GGTCTC	2 cut(s)	106, 675
BsrDI	GCAATG	2 cut(s)	117, 205
BsrI	ACTGG	2 cut(s)	269, 1164
BssECI	CCNNGG	2 cut(s)	560, 1153
BssHII	GCGCGC	1 cut(s)	914
BssMI	GATC	5 cut(s)	70, 233, 329, 676, 1053
BssNAI	GTATAC	1 cut(s)	177
BssNI	GRCGYC	1 cut(s)	828
BssT1I	CCWWGG	1 cut(s)	1153
Bst1107I	GTATAC	1 cut(s)	177
Bst2UI	CCWGG	3 cut(s)	39, 561, 1068
Bst4CI	ACNGT	3 cut(s)	249, 634, 902
Bst6I	CTCTTC	1 cut(s)	872
BstACI	GRCGYC	1 cut(s)	828
BstAPI	GCANNNNNTGC	1 cut(s)	998
BstBAI	YACGTR	1 cut(s)	283
BstC8I	GCNNGC	4 cut(s)	115, 451, 916, 999
BstDEI	CTNAG	2 cut(s)	57, 317
BstDSI	CCRYGG	1 cut(s)	1153
BstF5I	GGATG	2 cut(s)	688, 921
BstFNI	CGCG	3 cut(s)	504, 833, 916
BstH2I	RGCGCY	1 cut(s)	998
BstHHI	GCGC	3 cut(s)	916, 918, 997
BstKTI	GATC	5 cut(s)	73, 236, 332, 679, 1056
BstMAI	GTCTC	5 cut(s)	53, 106, 184, 504, 675
BstMBI	GATC	5 cut(s)	70, 233, 329, 676, 1053
BstMCI	CGRYCG	2 cut(s)	236, 679
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 954, 998
BstNI	CCWGG	3 cut(s)	39, 561, 1068
BstSCI	CCNGG	4 cut(s)	37, 344, 559, 1066
BstSLI	GKGCMC	2 cut(s)	569, 632
BstUI	CGCG	3 cut(s)	504, 833, 916
BstV1I	GCAGC	5 cut(s)	316, 346, 397, 472, 1004
BstZ17I	GTATAC	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	624
BsuRI	GGCC	3 cut(s)	268, 766, 1120
BtgI	CCRYGG	1 cut(s)	1153
BtgZI	GCGATG	3 cut(s)	468, 621, 957
BtsCI	GGATG	2 cut(s)	688, 921
Cac8I	GCNNGC	4 cut(s)	115, 451, 916, 999
CciI	TCATGA	1 cut(s)	525
CfoI	GCGC	3 cut(s)	916, 918, 997
Cfr13I	GGNCC	2 cut(s)	590, 764
CpoI	CGGWCCG	1 cut(s)	590
CseI	GACGC	2 cut(s)	310, 836
Csp6I	GTAC	3 cut(s)	82, 297, 909
CspI	CGGWCCG	1 cut(s)	590
CviAII	CATG	5 cut(s)	526, 647, 784, 926, 1154
CviQI	GTAC	3 cut(s)	82, 297, 909
DdeI	CTNAG	2 cut(s)	57, 317
DpnI	GATC	5 cut(s)	72, 235, 331, 678, 1055
DpnII	GATC	5 cut(s)	70, 233, 329, 676, 1053
DriI	GACNNNNNGTC	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	872
Eam1105I	GACNNNNNGTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	872
Eco130I	CCWWGG	1 cut(s)	1153
Eco24I	GRGCYC	1 cut(s)	385
Eco31I	GGTCTC	2 cut(s)	106, 675
Eco47I	GGWCC	1 cut(s)	590
Eco47III	AGCGCT	1 cut(s)	996
Eco57I	CTGAAG	1 cut(s)	136
EcoRII	CCWGG	3 cut(s)	37, 559, 1066
EcoT14I	CCWWGG	1 cut(s)	1153
EcoT38I	GRGCYC	1 cut(s)	385
ErhI	CCWWGG	1 cut(s)	1153
Esp3I	CGTCTC	1 cut(s)	504
FaeI	CATG	5 cut(s)	529, 650, 787, 929, 1157
FaqI	GGGAC	1 cut(s)	1095
FatI	CATG	5 cut(s)	525, 646, 783, 925, 1153
FauI	CCCGC	1 cut(s)	106
FblI	GTMKAC	1 cut(s)	176
Fnu4HI	GCNGC	7 cut(s)	305, 360, 411, 486, 820, 831, 993
FokI	GGATG	2 cut(s)	695, 908
FriOI	GRGCYC	1 cut(s)	385
Fsp4HI	GCNGC	7 cut(s)	305, 360, 411, 486, 820, 831, 993
FspBI	CTAG	2 cut(s)	954, 1186
GlaI	GCGC	3 cut(s)	915, 917, 996
GluI	GCNGC	7 cut(s)	305, 360, 411, 486, 820, 831, 993
HaeII	RGCGCY	1 cut(s)	998
HaeIII	GGCC	3 cut(s)	268, 766, 1120
HapII	CCGG	1 cut(s)	345
HgaI	GACGC	2 cut(s)	310, 836
HhaI	GCGC	3 cut(s)	916, 918, 997
Hin1I	GRCGYC	1 cut(s)	828
Hin1II	CATG	5 cut(s)	529, 650, 787, 929, 1157
Hin6I	GCGC	3 cut(s)	914, 916, 995
HinP1I	GCGC	3 cut(s)	914, 916, 995
HindIII	AAGCTT	2 cut(s)	687, 858
HinfI	GANTC	7 cut(s)	61, 192, 656, 706, 839, 984, 1040
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	2 cut(s)	177, 1168
Hpy188I	TCNGA	4 cut(s)	264, 289, 380, 1130
Hpy188III	TCNNGA	5 cut(s)	92, 526, 674, 680, 796
Hpy8I	GTNNAC	2 cut(s)	177, 1168
Hpy99I	CGWCG	1 cut(s)	304
HpyAV	CCTTC	4 cut(s)	96, 165, 802, 1131
HpyCH4III	ACNGT	3 cut(s)	249, 634, 902
HpyCH4IV	ACGT	2 cut(s)	282, 1164
HpyCH4V	TGCA	4 cut(s)	338, 488, 716, 977
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 954, 998
HpyF3I	CTNAG	2 cut(s)	57, 317
HpySE526I	ACGT	2 cut(s)	282, 1164
Hsp92I	GRCGYC	1 cut(s)	828
Hsp92II	CATG	5 cut(s)	529, 650, 787, 929, 1157
HspAI	GCGC	3 cut(s)	914, 916, 995
Kzo9I	GATC	5 cut(s)	70, 233, 329, 676, 1053
LmnI	GCTCC	3 cut(s)	40, 562, 1069
Lsp1109I	GCAGC	5 cut(s)	316, 346, 397, 472, 1004
LweI	GCATC	3 cut(s)	472, 783, 1143
MaeI	CTAG	2 cut(s)	954, 1186
MaeII	ACGT	2 cut(s)	282, 1164
MalI	GATC	5 cut(s)	72, 235, 331, 678, 1055
MboI	GATC	5 cut(s)	70, 233, 329, 676, 1053
MboII	GAAGA	3 cut(s)	541, 688, 859
MfeI	CAATTG	1 cut(s)	1114
MhlI	GDGCHC	3 cut(s)	385, 569, 632
MluCI	AATT	3 cut(s)	373, 424, 1114
MlyI	GAGTC	4 cut(s)	55, 186, 650, 848
MnlI	CCTC	9 cut(s)	91, 135, 258, 875, 929, 982, 1012, 1136, 1152
MseI	TTAA	1 cut(s)	723
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	4 cut(s)	39, 346, 561, 1068
MunI	CAATTG	1 cut(s)	1114
Mva1269I	GAATGC	1 cut(s)	488
MvaI	CCWGG	3 cut(s)	39, 561, 1068
MvnI	CGCG	3 cut(s)	504, 833, 916
MwoI	GCNNNNNNNGC	3 cut(s)	119, 954, 998
NciI	CCSGG	1 cut(s)	346
NcoI	CCATGG	1 cut(s)	1153
NdeII	GATC	5 cut(s)	70, 233, 329, 676, 1053
NlaIII	CATG	5 cut(s)	529, 650, 787, 929, 1157
NlaIV	GGNNCC	2 cut(s)	77, 1072
NmeAIII	GCCGAG	1 cut(s)	174
PagI	TCATGA	1 cut(s)	525
PauI	GCGCGC	1 cut(s)	914
PcsI	WCGNNNNNNNCGW	1 cut(s)	672
PctI	GAATGC	1 cut(s)	488
PfeI	GAWTC	3 cut(s)	706, 984, 1040
PflFI	GACNNNGTC	1 cut(s)	98
PflMI	CCANNNNNTGG	2 cut(s)	441, 1159
PkrI	GCNGC	7 cut(s)	306, 361, 412, 487, 821, 832, 994
Ple19I	CGATCG	2 cut(s)	236, 679
PleI	GAGTC	4 cut(s)	55, 186, 650, 847
PpsI	GAGTC	4 cut(s)	55, 186, 650, 847
Ppu21I	YACGTR	1 cut(s)	283
PsiI	TTATAA	1 cut(s)	893
Psp6I	CCWGG	3 cut(s)	37, 559, 1066
PspGI	CCWGG	3 cut(s)	37, 559, 1066
PspN4I	GGNNCC	2 cut(s)	77, 1072
PspPI	GGNCC	2 cut(s)	590, 764
PsyI	GACNNNGTC	1 cut(s)	98
PteI	GCGCGC	1 cut(s)	914
PvuI	CGATCG	2 cut(s)	236, 679
RsaI	GTAC	3 cut(s)	83, 298, 910
RsaNI	GTAC	3 cut(s)	82, 297, 909
Rsr2I	CGGWCCG	1 cut(s)	590
RsrII	CGGWCCG	1 cut(s)	590
SaqAI	TTAA	1 cut(s)	723
SatI	GCNGC	7 cut(s)	305, 360, 411, 486, 820, 831, 993
Sau3AI	GATC	5 cut(s)	70, 233, 329, 676, 1053
Sau96I	GGNCC	2 cut(s)	590, 764
SchI	GAGTC	4 cut(s)	55, 186, 650, 848
ScrFI	CCNGG	4 cut(s)	39, 346, 561, 1068
SduI	GDGCHC	3 cut(s)	385, 569, 632
SfaNI	GCATC	3 cut(s)	472, 783, 1143
SinI	GGWCC	1 cut(s)	590
SmlI	CTYRAG	3 cut(s)	90, 623, 796
SmoI	CTYRAG	3 cut(s)	90, 623, 796
Sse9I	AATT	3 cut(s)	373, 424, 1114
SsiI	CCGC	5 cut(s)	113, 504, 593, 819, 831
SspMI	CTAG	2 cut(s)	954, 1186
StyD4I	CCNGG	4 cut(s)	37, 344, 559, 1066
StyI	CCWWGG	1 cut(s)	1153
TaaI	ACNGT	3 cut(s)	249, 634, 902
TaiI	ACGT	2 cut(s)	285, 1167
TaqI	TCGA	1 cut(s)	987
TasI	AATT	3 cut(s)	373, 424, 1114
TauI	GCSGC	2 cut(s)	822, 833
TfiI	GAWTC	3 cut(s)	706, 984, 1040
Tru1I	TTAA	1 cut(s)	723
Tru9I	TTAA	1 cut(s)	723
TseI	GCWGC	5 cut(s)	304, 359, 410, 485, 992
TspDTI	ATGAA	7 cut(s)	483, 514, 525, 542, 699, 870, 1075
TspGWI	ACGGA	4 cut(s)	482, 603, 821, 1097
Tth111I	GACNNNGTC	1 cut(s)	98
Van91I	CCANNNNNTGG	2 cut(s)	441, 1159
VpaK11BI	GGWCC	1 cut(s)	590
XmiI	GTMKAC	1 cut(s)	176
XspI	CTAG	2 cut(s)	954, 1186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.