Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003284

Physical Location & Seq

Genomic Coordinates Forward (+)

82713831 .. 82715192

Gene Structure 1362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG524200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAAGAACGAGTATGTGCTATTGGACTATGCTCCTGGGGGCACAAACGACAAGGTATTGAACGGACCGCTTCTTATCTGCGATGGGTATCCATCTCTCAAGGGCACAGTCTTTACAGAACATGGTATAGACTCTGCTTTCGGGTCTCACGATCGGGATGAAGCTTTTATCTTCTCTGGGAATCTCTCTGCACACATTAACTTCGCACTACACACCACAAATGACAAGATAATCAAAGGGCCGATTAGCATCTCTGCCATGTTCCCCTTCTTGAGAAAAACGGAGTTTGAAAGCGGCATAGACGCCGCGTTTGAGTCAATGACAAAATATGAAGCTTACCTCTTCAAAGACGACAAGTATGCTCTTATAAACTACGGTTCTGGTACTGCGCGCCTCATCCATGTCAAGCCCATCGGCGATGGCTATCCTAGCTTGAAAAACACCATCTTTGCAAGTGGAATCGAGGCAGCGCTTGCTTCACACAGGTATAATGAGGCATACCTTTTCAAAGGAGATTCCTACTGCTGGATCAACTTTGCTCCTGGCACCACAAATGACTTCATCGGTGGAGTGAAGCAAATCCGTCCCAATTGGCCTTCCCACCGAAGCATCTTGCCTCGCAAATACCATCGACTTGACGTTCACAATCACACTTCACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemopexin

Protein Analysis

220

Amino Acids

24.56

Weight (kDa)

6.83

Isoelectric Point (pI)

21.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0076401 RchiOBHm_Chr5g0076491 RchiOBHm_Chr5g0076541 RchiOBHm_Chr5g0076681 RchiOBHm_Chr5g0076801
rosa_multiflora	Rmu_sc0000369.1_g000005 Rmu_sc0000369.1_g000007 Rmu_sc0000369.1_g000008 Rmu_sc0000369.1_g000010 Rmu_sc0002400.1_g000007 Rmu_sc0006747.1_g000015 Rmu_ssc0000184.1_g000027 Rmu_ssc0000184.1_g000037
rosa_roxburghii	Rroxscaffold_1G00005320 Rroxscaffold_1G00005330 Rroxscaffold_1G00005350 Rroxscaffold_1G00005390 Rroxscaffold_1G00005410
rosa_rugosa	Rorug05G0447500.1 Rorug05G0447600 Rorug05G0447700 Rorug05G0448600 Rorug05G0448800 Rorug05G0448900 Rorug05G0449000 Rorug05G0449100
rosa_samantha	Rh5AG502400 Rh5AG503500 Rh5BG524200 Rh5CG547800 Rh5DG536800 Rh5DG536900 Rh5DG537000 Rh5DG537100
rosa_wichuraiana	Rw5G046680 Rw5G046690 Rw5G046700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	368
AccB1I	GGYRCC	1 cut(s)	545
AccII	CGCG	2 cut(s)	308, 391
AciI	CCGC	3 cut(s)	68, 294, 306
AclWI	GGATC	1 cut(s)	536
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	1 cut(s)	385
AfeI	AGCGCT	1 cut(s)	471
AfiI	CCNNNNNNNGG	1 cut(s)	525
AgsI	TTSAA	5 cut(s)	61, 290, 346, 436, 508
AjnI	CCWGG	2 cut(s)	34, 541
AluBI	AGCT	3 cut(s)	164, 335, 432
AluI	AGCT	3 cut(s)	164, 335, 432
Alw26I	GTCTC	1 cut(s)	150
AlwI	GGATC	1 cut(s)	536
Aor51HI	AGCGCT	1 cut(s)	471
AoxI	GGCC	2 cut(s)	239, 593
ApeKI	GCWGC	1 cut(s)	467
ArsI	GACNNNNNNTTYG	4 cut(s)	122, 154, 293, 325
AspLEI	GCGC	3 cut(s)	391, 393, 472
AspS9I	GGNCC	2 cut(s)	65, 239
AvaII	GGWCC	1 cut(s)	65
BaeGI	GKGCMC	2 cut(s)	44, 107
BanI	GGYRCC	1 cut(s)	545
BbvI	GCAGC	1 cut(s)	479
BccI	CCATC	6 cut(s)	77, 100, 413, 419, 452, 636
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciT130I	CCWGG	2 cut(s)	36, 543
BciVI	GTATCC	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	150
BfaI	CTAG	2 cut(s)	429, 661
BfoI	RGCGCY	1 cut(s)	473
BfuI	GTATCC	1 cut(s)	99
BisI	GCNGC	3 cut(s)	295, 306, 468
BlsI	GCNGC	3 cut(s)	296, 307, 469
Bme1390I	CCNGG	2 cut(s)	36, 543
Bme18I	GGWCC	1 cut(s)	65
BmgT120I	GGNCC	2 cut(s)	65, 239
BmiI	GGNNCC	1 cut(s)	547
BmrFI	CCNGG	2 cut(s)	36, 543
BmsI	GCATC	2 cut(s)	258, 618
BpuEI	CTTGAG	2 cut(s)	83, 292
BsaBI	GATNNNNATC	3 cut(s)	87, 248, 423
BsaHI	GRCGYC	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	525
Bse8I	GATNNNNATC	3 cut(s)	87, 248, 423
BseBI	CCWGG	2 cut(s)	36, 543
BseDI	CCNNGG	1 cut(s)	35
BseGI	GGATG	2 cut(s)	163, 396
BseJI	GATNNNNATC	3 cut(s)	87, 248, 423
BseLI	CCNNNNNNNGG	1 cut(s)	525
BsePI	GCGCGC	1 cut(s)	389
BseSI	GKGCMC	2 cut(s)	44, 107
BseXI	GCAGC	1 cut(s)	479
BsgI	GTGCAG	1 cut(s)	174
Bsh1236I	CGCG	2 cut(s)	308, 391
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	2 cut(s)	241, 595
BshNI	GGYRCC	1 cut(s)	545
BsiEI	CGRYCG	1 cut(s)	154
BslFI	GGGAC	1 cut(s)	570
BslI	CCNNNNNNNGG	1 cut(s)	525
BsmAI	GTCTC	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	570
BsnI	GGCC	2 cut(s)	241, 595
Bso31I	GGTCTC	1 cut(s)	150
Bsp1286I	GDGCHC	2 cut(s)	44, 107
Bsp143I	GATC	2 cut(s)	151, 528
BspACI	CCGC	3 cut(s)	68, 294, 306
BspANI	GGCC	2 cut(s)	241, 595
BspFNI	CGCG	2 cut(s)	308, 391
BspLI	GGNNCC	1 cut(s)	547
BspPI	GGATC	1 cut(s)	536
BspT107I	GGYRCC	1 cut(s)	545
BspTNI	GGTCTC	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	35
BssHII	GCGCGC	1 cut(s)	389
BssMI	GATC	2 cut(s)	151, 528
BssNI	GRCGYC	1 cut(s)	303
Bst2UI	CCWGG	2 cut(s)	36, 543
Bst4CI	ACNGT	2 cut(s)	109, 377
Bst6I	CTCTTC	1 cut(s)	347
BstACI	GRCGYC	1 cut(s)	303
BstAPI	GCANNNNNTGC	1 cut(s)	473
BstC8I	GCNNGC	2 cut(s)	391, 474
BstF5I	GGATG	2 cut(s)	163, 396
BstFNI	CGCG	2 cut(s)	308, 391
BstH2I	RGCGCY	1 cut(s)	473
BstHHI	GCGC	3 cut(s)	391, 393, 472
BstKTI	GATC	2 cut(s)	154, 531
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	2 cut(s)	151, 528
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	2 cut(s)	429, 473
BstNI	CCWGG	2 cut(s)	36, 543
BstSCI	CCNGG	2 cut(s)	34, 541
BstSLI	GKGCMC	2 cut(s)	44, 107
BstUI	CGCG	2 cut(s)	308, 391
BstV1I	GCAGC	1 cut(s)	479
BsuI	GTATCC	1 cut(s)	99
BsuRI	GGCC	2 cut(s)	241, 595
BtgZI	GCGATG	2 cut(s)	96, 432
BtsCI	GGATG	2 cut(s)	163, 396
Cac8I	GCNNGC	2 cut(s)	391, 474
CfoI	GCGC	3 cut(s)	391, 393, 472
Cfr13I	GGNCC	2 cut(s)	65, 239
CpoI	CGGWCCG	1 cut(s)	65
CseI	GACGC	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	384
CspI	CGGWCCG	1 cut(s)	65
CviAII	CATG	3 cut(s)	122, 259, 401
CviJI	RGCY	7 cut(s)	164, 241, 335, 409, 423, 432, 595
CviKI_1	RGCY	7 cut(s)	164, 241, 335, 409, 423, 432, 595
CviQI	GTAC	1 cut(s)	384
DpnI	GATC	2 cut(s)	153, 530
DpnII	GATC	2 cut(s)	151, 528
Eam1104I	CTCTTC	1 cut(s)	347
EarI	CTCTTC	1 cut(s)	347
Eco31I	GGTCTC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	65
Eco47III	AGCGCT	1 cut(s)	471
EcoRII	CCWGG	2 cut(s)	34, 541
FaeI	CATG	3 cut(s)	125, 262, 404
FaqI	GGGAC	1 cut(s)	570
FatI	CATG	3 cut(s)	121, 258, 400
Fnu4HI	GCNGC	3 cut(s)	295, 306, 468
FokI	GGATG	2 cut(s)	170, 383
Fsp4HI	GCNGC	3 cut(s)	295, 306, 468
FspBI	CTAG	2 cut(s)	429, 661
GlaI	GCGC	3 cut(s)	390, 392, 471
GluI	GCNGC	3 cut(s)	295, 306, 468
HaeII	RGCGCY	1 cut(s)	473
HaeIII	GGCC	2 cut(s)	241, 595
HgaI	GACGC	1 cut(s)	311
HhaI	GCGC	3 cut(s)	391, 393, 472
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	3 cut(s)	125, 262, 404
Hin6I	GCGC	3 cut(s)	389, 391, 470
HinP1I	GCGC	3 cut(s)	389, 391, 470
HindIII	AAGCTT	2 cut(s)	162, 333
HinfI	GANTC	5 cut(s)	131, 181, 314, 459, 515
Hpy166II	GTNNAC	1 cut(s)	643
Hpy188III	TCNNGA	3 cut(s)	149, 155, 271
Hpy8I	GTNNAC	1 cut(s)	643
HpyAV	CCTTC	2 cut(s)	277, 606
HpyCH4III	ACNGT	2 cut(s)	109, 377
HpyCH4IV	ACGT	1 cut(s)	639
HpyCH4V	TGCA	2 cut(s)	191, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	429, 473
HpySE526I	ACGT	1 cut(s)	639
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	3 cut(s)	125, 262, 404
HspAI	GCGC	3 cut(s)	389, 391, 470
Kzo9I	GATC	2 cut(s)	151, 528
LmnI	GCTCC	2 cut(s)	37, 544
LpnPI	CCDG	8 cut(s)	21, 48, 162, 366, 469, 511, 528, 555
Lsp1109I	GCAGC	1 cut(s)	479
LweI	GCATC	2 cut(s)	258, 618
MaeI	CTAG	2 cut(s)	429, 661
MaeII	ACGT	1 cut(s)	639
MalI	GATC	2 cut(s)	153, 530
MboI	GATC	2 cut(s)	151, 528
MboII	GAAGA	3 cut(s)	16, 163, 334
MfeI	CAATTG	1 cut(s)	589
MhlI	GDGCHC	2 cut(s)	44, 107
MluCI	AATT	1 cut(s)	589
MlyI	GAGTC	2 cut(s)	125, 323
MnlI	CCTC	5 cut(s)	350, 404, 457, 487, 627
MseI	TTAA	1 cut(s)	198
MspR9I	CCNGG	2 cut(s)	36, 543
MunI	CAATTG	1 cut(s)	589
MvaI	CCWGG	2 cut(s)	36, 543
MvnI	CGCG	2 cut(s)	308, 391
MwoI	GCNNNNNNNGC	2 cut(s)	429, 473
NdeII	GATC	2 cut(s)	151, 528
NlaIII	CATG	3 cut(s)	125, 262, 404
NlaIV	GGNNCC	1 cut(s)	547
PauI	GCGCGC	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PfeI	GAWTC	3 cut(s)	181, 459, 515
PkrI	GCNGC	3 cut(s)	296, 307, 469
Ple19I	CGATCG	1 cut(s)	154
PleI	GAGTC	2 cut(s)	125, 322
PpsI	GAGTC	2 cut(s)	125, 322
PsiI	TTATAA	1 cut(s)	368
Psp6I	CCWGG	2 cut(s)	34, 541
PspGI	CCWGG	2 cut(s)	34, 541
PspN4I	GGNNCC	1 cut(s)	547
PspPI	GGNCC	2 cut(s)	65, 239
PteI	GCGCGC	1 cut(s)	389
PvuI	CGATCG	1 cut(s)	154
RsaI	GTAC	1 cut(s)	385
RsaNI	GTAC	1 cut(s)	384
Rsr2I	CGGWCCG	1 cut(s)	65
RsrII	CGGWCCG	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	3 cut(s)	295, 306, 468
Sau3AI	GATC	2 cut(s)	151, 528
Sau96I	GGNCC	2 cut(s)	65, 239
SchI	GAGTC	2 cut(s)	125, 323
ScrFI	CCNGG	2 cut(s)	36, 543
SduI	GDGCHC	2 cut(s)	44, 107
SetI	ASST	8 cut(s)	57, 166, 337, 342, 434, 488, 504, 642
SfaNI	GCATC	2 cut(s)	258, 618
SinI	GGWCC	1 cut(s)	65
SmlI	CTYRAG	2 cut(s)	98, 271
SmoI	CTYRAG	2 cut(s)	98, 271
Sse9I	AATT	1 cut(s)	589
SsiI	CCGC	3 cut(s)	68, 294, 306
SspMI	CTAG	2 cut(s)	429, 661
StyD4I	CCNGG	2 cut(s)	34, 541
TaaI	ACNGT	2 cut(s)	109, 377
TaiI	ACGT	1 cut(s)	642
TaqI	TCGA	2 cut(s)	462, 631
TasI	AATT	1 cut(s)	589
TauI	GCSGC	2 cut(s)	297, 308
TfiI	GAWTC	3 cut(s)	181, 459, 515
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TseI	GCWGC	1 cut(s)	467
TspDTI	ATGAA	4 cut(s)	17, 174, 345, 550
TspGWI	ACGGA	3 cut(s)	78, 296, 572
VpaK11BI	GGWCC	1 cut(s)	65
XspI	CTAG	2 cut(s)	429, 661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.