Rorug05G0449100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003284
Physical Location & Seq
Forward (+)
62149501 .. 62149932
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0449100.1

Sequence Viewer

Length: 432 bp
ATGGCCGGTGTTGATGATGTGACTTCGAAGCTTGCTGCGGCCCTAGCTATTGGGGGAGATGAGTACCAATGTGAGGATCCTGTAGGGGACTCGACTGATCCAAACTACCATTGGTTGGTGGGCCGTCTGGTCTCGGTGGAGACAACAAAGGCGGCAACGCACTGCTTCATGGTGCAGATTGGGCAGGTCTGGCCGGTTTCTGATCATGGTTTGGTGATCTGTGAACGTCCGAATGGTCGATTTCTTTTCCGTTTTGTTAATCCGACGGATAAGCAGAAGGTCCTGGCAAAATCACCGTGGTACTATCGCTCGGCAACTCTCGTTTTAGGGGATTATGATGGGGTGAGCGAGATTATGGATGTGCCTCTTAACCGGTTGCCTATCTGGGTGCAGATCAGTGGGTTGCCGCCGGCCTACACTACACAGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hemopexin

Protein Analysis

143

Amino Acids

15.8

Weight (kDa)

4.99

Isoelectric Point (pI)

28.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 62 - 109 1e-07 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 175
AccB7I CCANNNNNTGG 1 cut(s) 115
AciI CCGC 3 cut(s) 38, 152, 407
AclWI GGATC 3 cut(s) 71, 84, 92
AcoI YGGCCR 2 cut(s) 3, 191
AfaI GTAC 2 cut(s) 65, 302
AfiI CCNNNNNNNGG 2 cut(s) 73, 115
AgeI ACCGGT 1 cut(s) 372
AjnI CCWGG 1 cut(s) 282
AluBI AGCT 2 cut(s) 31, 47
AluI AGCT 2 cut(s) 31, 47
Alw26I GTCTC 2 cut(s) 134, 136
AlwI GGATC 3 cut(s) 71, 84, 92
AoxI GGCC 5 cut(s) 3, 39, 121, 191, 411
ApeKI GCWGC 1 cut(s) 35
AsiGI ACCGGT 1 cut(s) 372
AspS9I GGNCC 3 cut(s) 40, 121, 280
AsuHPI GGTGA 3 cut(s) 226, 285, 355
AsuII TTCGAA 1 cut(s) 26
AvaII GGWCC 1 cut(s) 280
BamHI GGATCC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 22
BccI CCATC 1 cut(s) 332
BceAI ACGGC 1 cut(s) 108
BciT130I CCWGG 1 cut(s) 284
BclI TGATCA 1 cut(s) 202
BcoDI GTCTC 2 cut(s) 134, 136
BfaI CTAG 1 cut(s) 44
BfmI CTRYAG 1 cut(s) 81
BfuAI ACCTGC 1 cut(s) 175
BisI GCNGC 4 cut(s) 36, 39, 153, 407
BlsI GCNGC 4 cut(s) 37, 40, 154, 408
Bme1390I CCNGG 1 cut(s) 284
Bme18I GGWCC 1 cut(s) 280
BmgT120I GGNCC 3 cut(s) 40, 121, 280
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 284
Bpu14I TTCGAA 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 296
BsaWI WCCGGW 1 cut(s) 372
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 115
Bse118I RCCGGY 4 cut(s) 5, 193, 372, 409
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 1 cut(s) 296
BseGI GGATG 1 cut(s) 364
BseLI CCNNNNNNNGG 2 cut(s) 73, 115
BseXI GCAGC 1 cut(s) 22
BsgI GTGCAG 2 cut(s) 194, 410
BshFI GGCC 5 cut(s) 5, 41, 123, 193, 413
BshTI ACCGGT 1 cut(s) 372
BsiSI CCGG 4 cut(s) 6, 194, 373, 410
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 2 cut(s) 73, 115
BsmAI GTCTC 2 cut(s) 134, 136
BsmFI GGGAC 1 cut(s) 101
BsnI GGCC 5 cut(s) 5, 41, 123, 193, 413
Bso31I GGTCTC 1 cut(s) 136
Bsp119I TTCGAA 1 cut(s) 26
Bsp143I GATC 5 cut(s) 76, 97, 202, 216, 393
BspACI CCGC 3 cut(s) 38, 152, 407
BspANI GGCC 5 cut(s) 5, 41, 123, 193, 413
BspLI GGNNCC 1 cut(s) 78
BspMI ACCTGC 1 cut(s) 175
BspPI GGATC 3 cut(s) 71, 84, 92
BspT104I TTCGAA 1 cut(s) 26
BspTNI GGTCTC 1 cut(s) 136
BsrFI RCCGGY 4 cut(s) 5, 193, 372, 409
BssAI RCCGGY 4 cut(s) 5, 193, 372, 409
BssECI CCNNGG 1 cut(s) 296
BssMI GATC 5 cut(s) 76, 97, 202, 216, 393
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 1 cut(s) 297
BstBI TTCGAA 1 cut(s) 26
BstC8I GCNNGC 2 cut(s) 33, 411
BstDEI CTNAG 1 cut(s) 429
BstDSI CCRYGG 1 cut(s) 296
BstF5I GGATG 1 cut(s) 364
BstKTI GATC 5 cut(s) 79, 100, 205, 219, 396
BstMAI GTCTC 2 cut(s) 134, 136
BstMBI GATC 5 cut(s) 76, 97, 202, 216, 393
BstMWI GCNNNNNNNGC 3 cut(s) 44, 181, 190
BstNI CCWGG 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 282
BstSFI CTRYAG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 22
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BsuRI GGCC 5 cut(s) 5, 41, 123, 193, 413
BtgI CCRYGG 1 cut(s) 296
BtsCI GGATG 1 cut(s) 364
BtsI GCAGTG 1 cut(s) 160
BtsIMutI CAGTG 2 cut(s) 160, 403
BveI ACCTGC 1 cut(s) 175
Cac8I GCNNGC 2 cut(s) 33, 411
Cfr10I RCCGGY 4 cut(s) 5, 193, 372, 409
Cfr13I GGNCC 3 cut(s) 40, 121, 280
Csp6I GTAC 2 cut(s) 64, 301
CspAI ACCGGT 1 cut(s) 372
CviAII CATG 2 cut(s) 169, 206
CviJI RGCY 7 cut(s) 5, 31, 41, 47, 123, 193, 413
CviKI_1 RGCY 7 cut(s) 5, 31, 41, 47, 123, 193, 413
CviQI GTAC 2 cut(s) 64, 301
DdeI CTNAG 1 cut(s) 429
DpnI GATC 5 cut(s) 78, 99, 204, 218, 395
DpnII GATC 5 cut(s) 76, 97, 202, 216, 393
EaeI YGGCCR 2 cut(s) 3, 191
Eco31I GGTCTC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 280
EcoO109I RGGNCCY 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 282
FaeI CATG 2 cut(s) 172, 209
FaiI YATR 4 cut(s) 170, 207, 336, 356
FaqI GGGAC 1 cut(s) 101
FatI CATG 2 cut(s) 168, 205
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 4 cut(s) 36, 39, 153, 407
FokI GGATG 1 cut(s) 371
Fsp4HI GCNGC 4 cut(s) 36, 39, 153, 407
FspBI CTAG 1 cut(s) 44
GluI GCNGC 4 cut(s) 36, 39, 153, 407
HaeIII GGCC 5 cut(s) 5, 41, 123, 193, 413
HapII CCGG 4 cut(s) 6, 194, 373, 410
Hin1II CATG 2 cut(s) 172, 209
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 1 cut(s) 89
HpaII CCGG 4 cut(s) 6, 194, 373, 410
HphI GGTGA 3 cut(s) 226, 285, 355
Hpy166II GTNNAC 1 cut(s) 224
Hpy188I TCNGA 3 cut(s) 202, 231, 264
Hpy8I GTNNAC 1 cut(s) 224
Hpy99I CGWCG 1 cut(s) 268
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 1 cut(s) 297
HpyCH4IV ACGT 1 cut(s) 226
HpyCH4V TGCA 2 cut(s) 175, 391
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 181, 190
HpyF3I CTNAG 1 cut(s) 429
HpySE526I ACGT 1 cut(s) 226
Hsp92II CATG 2 cut(s) 172, 209
KroI GCCGGC 1 cut(s) 409
KroNI GCCGGC 1 cut(s) 411
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 5 cut(s) 76, 97, 202, 216, 393
Lsp1109I GCAGC 1 cut(s) 22
MaeI CTAG 1 cut(s) 44
MaeII ACGT 1 cut(s) 226
MaeIII GTNAC 1 cut(s) 19
MalI GATC 5 cut(s) 78, 99, 204, 218, 395
MboI GATC 5 cut(s) 76, 97, 202, 216, 393
MflI RGATCY 1 cut(s) 76
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 287
MnlI CCTC 2 cut(s) 67, 375
MroNI GCCGGC 1 cut(s) 409
MseI TTAA 2 cut(s) 258, 369
MspI CCGG 4 cut(s) 6, 194, 373, 410
MspR9I CCNGG 1 cut(s) 284
MvaI CCWGG 1 cut(s) 284
MwoI GCNNNNNNNGC 3 cut(s) 44, 181, 190
NaeI GCCGGC 1 cut(s) 411
NdeII GATC 5 cut(s) 76, 97, 202, 216, 393
NgoMIV GCCGGC 1 cut(s) 409
NlaIII CATG 2 cut(s) 172, 209
NlaIV GGNNCC 1 cut(s) 78
NmeAIII GCCGAG 1 cut(s) 290
NmuCI GTSAC 1 cut(s) 19
NspV TTCGAA 1 cut(s) 26
PdiI GCCGGC 1 cut(s) 411
PflMI CCANNNNNTGG 1 cut(s) 115
PinAI ACCGGT 1 cut(s) 372
PkrI GCNGC 4 cut(s) 37, 40, 154, 408
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
PpuMI RGGWCCY 1 cut(s) 280
Psp5II RGGWCCY 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 282
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 3 cut(s) 40, 121, 280
PspPPI RGGWCCY 1 cut(s) 280
PsuI RGATCY 1 cut(s) 76
RsaI GTAC 2 cut(s) 65, 302
RsaNI GTAC 2 cut(s) 64, 301
SaqAI TTAA 2 cut(s) 258, 369
SatI GCNGC 4 cut(s) 36, 39, 153, 407
Sau3AI GATC 5 cut(s) 76, 97, 202, 216, 393
Sau96I GGNCC 3 cut(s) 40, 121, 280
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 1 cut(s) 284
SetI ASST 5 cut(s) 33, 49, 189, 229, 282
SfcI CTRYAG 1 cut(s) 81
SfuI TTCGAA 1 cut(s) 26
SinI GGWCC 1 cut(s) 280
SsiI CCGC 3 cut(s) 38, 152, 407
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 282
TaaI ACNGT 1 cut(s) 297
TaiI ACGT 1 cut(s) 229
TaqI TCGA 3 cut(s) 26, 92, 238
TauI GCSGC 3 cut(s) 41, 155, 409
Tru1I TTAA 2 cut(s) 258, 369
Tru9I TTAA 2 cut(s) 258, 369
TscAI CASTG 2 cut(s) 167, 403
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 157
TspGWI ACGGA 2 cut(s) 239, 281
TspRI CASTG 2 cut(s) 167, 403
Van91I CCANNNNNTGG 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 280
XcmI CCANNNNNNNNNTGG 1 cut(s) 108
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.