Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003284

Physical Location & Seq

Genomic Coordinates Reverse (-)

80947069 .. 80947926

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G046680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTGGGAAGGCCCTTCAAACTCCAGGCTAGAGAAACGATCAGCCGACAACTCAAACGCCACAGATTGGTATGTTGGCGGTGTGGCTAACTATGAAAGCTACATAGATGCTGCATTCCGTTCGTCTCGCGGAAATGAAGCCTATCTATTCATGAAGAACGAGTATGTGCTAATCAACTATGCTCCTGGCAGTACAAACGACAGGGTATTGAACGGACCGCTCTTTATCTGCGATGGGTATCCATCTCTAACGGGCACAGCCTTTGCAGAACATGGTATAGACTGTGCTTTCGGGTCTCATGATCGGGATGAAGCCTTTATCTTCTCTGGGAATCTCTGTGCACACATTAACTTAGCACCGGGCACCACAAATGACAAGATAATTAACGGCCCGATGACCATCAGTGCCATGTTCCCCTTCTTCAAATCGACTGTGTTTTCAACCGGCATAGATGCCGCGTTTGAGGCAACAACAAAATATGAAGCTTACCTCTTCAAAGACAACCCGTATGCTCTTATAAACTACCGTTCTGGTAGTGCCCGCCTCATCCACCGCCAGCTCATCACTGATGGCTTTCGTGGTTTGAGAAACACAATCTTTGCAAGTGGAATCGAGGCAGCGTTTGCTTCGCACAGGACTAATGAGGCATACCTATTCAAAGGAGATTCCTGCGCACTCATCAACTTTGCTCCTGGCACCACTAATGACTACATCATCGGTGGCGTCAAGAAGATCCTGCCCAATTGGCCCTCTCTGCAACCGATCTTGCCTCGCAAAAACCGTGGACTTGACGTTCACAACCCATCTAGCCCTGGTGTTGATGATGCTGGCCGTAACCAAGATCATGATGAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemopexin

Protein Analysis

285

Amino Acids

31.34

Weight (kDa)

5.64

Isoelectric Point (pI)

27.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0076401 RchiOBHm_Chr5g0076491 RchiOBHm_Chr5g0076541 RchiOBHm_Chr5g0076681 RchiOBHm_Chr5g0076801
rosa_multiflora	Rmu_sc0000369.1_g000005 Rmu_sc0000369.1_g000007 Rmu_sc0000369.1_g000008 Rmu_sc0000369.1_g000010 Rmu_sc0002400.1_g000007 Rmu_sc0006747.1_g000015 Rmu_ssc0000184.1_g000027 Rmu_ssc0000184.1_g000037
rosa_roxburghii	Rroxscaffold_1G00005320 Rroxscaffold_1G00005330 Rroxscaffold_1G00005350 Rroxscaffold_1G00005390 Rroxscaffold_1G00005410
rosa_rugosa	Rorug05G0447500.1 Rorug05G0447600 Rorug05G0447700 Rorug05G0448600 Rorug05G0448800 Rorug05G0448900 Rorug05G0449000 Rorug05G0449100
rosa_samantha	Rh5AG502400 Rh5AG503500 Rh5BG524200 Rh5CG547800 Rh5DG536800 Rh5DG536900 Rh5DG537000 Rh5DG537100
rosa_wichuraiana	Rw5G046680 Rw5G046690 Rw5G046700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	518
Acc16I	TGCGCA	1 cut(s)	673
AccB1I	GGYRCC	2 cut(s)	362, 695
AccB7I	CCANNNNNTGG	1 cut(s)	66
AccBSI	CCGCTC	1 cut(s)	220
AccII	CGCG	2 cut(s)	129, 458
AciI	CCGC	6 cut(s)	78, 129, 218, 456, 541, 553
AclWI	GGATC	1 cut(s)	727
AcoI	YGGCCR	1 cut(s)	829
AcyI	GRCGYC	1 cut(s)	723
AfaI	GTAC	1 cut(s)	193
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	6 cut(s)	18, 211, 424, 441, 496, 658
AjnI	CCWGG	4 cut(s)	23, 184, 691, 811
AloI	GAACNNNNNNTCC	2 cut(s)	777, 809
AluBI	AGCT	3 cut(s)	99, 485, 559
AluI	AGCT	3 cut(s)	99, 485, 559
Alw21I	GWGCWC	1 cut(s)	343
Alw26I	GTCTC	2 cut(s)	129, 300
Alw44I	GTGCAC	1 cut(s)	339
AlwI	GGATC	1 cut(s)	727
AoxI	GGCC	4 cut(s)	10, 388, 746, 829
ApaLI	GTGCAC	1 cut(s)	339
ApeKI	GCWGC	2 cut(s)	110, 617
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
AspLEI	GCGC	1 cut(s)	674
AspS9I	GGNCC	4 cut(s)	11, 215, 389, 747
AsuC2I	CCSGG	1 cut(s)	360
AvaII	GGWCC	1 cut(s)	215
BaeGI	GKGCMC	4 cut(s)	257, 343, 365, 541
BanI	GGYRCC	2 cut(s)	362, 695
Bbv12I	GWGCWC	1 cut(s)	343
BbvI	GCAGC	2 cut(s)	97, 629
BccI	CCATC	5 cut(s)	227, 250, 407, 563, 811
BceAI	ACGGC	2 cut(s)	403, 816
BcgI	CGANNNNNNTGC	2 cut(s)	102, 136
BciT130I	CCWGG	4 cut(s)	25, 186, 693, 813
BciVI	GTATCC	1 cut(s)	249
BcnI	CCSGG	1 cut(s)	360
BcoDI	GTCTC	2 cut(s)	129, 300
BfaI	CTAG	2 cut(s)	29, 807
BfuI	GTATCC	1 cut(s)	249
BglI	GCCNNNNNGGC	1 cut(s)	745
BisI	GCNGC	3 cut(s)	111, 456, 618
BlsI	GCNGC	3 cut(s)	112, 457, 619
Bme1390I	CCNGG	5 cut(s)	25, 186, 360, 693, 813
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	4 cut(s)	11, 215, 389, 747
BmiI	GGNNCC	2 cut(s)	364, 697
BmrFI	CCNGG	5 cut(s)	25, 186, 360, 693, 813
BmsI	GCATC	3 cut(s)	97, 442, 814
BpmI	CTGGAG	1 cut(s)	7
BpuMI	CCSGG	1 cut(s)	360
BsaBI	GATNNNNATC	2 cut(s)	237, 398
BsaHI	GRCGYC	1 cut(s)	723
BsaI	GGTCTC	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	781, 811
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse118I	RCCGGY	1 cut(s)	443
Bse8I	GATNNNNATC	2 cut(s)	237, 398
BseBI	CCWGG	4 cut(s)	25, 186, 693, 813
BseDI	CCNNGG	2 cut(s)	781, 811
BseGI	GGATG	2 cut(s)	313, 546
BseJI	GATNNNNATC	2 cut(s)	237, 398
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseSI	GKGCMC	4 cut(s)	257, 343, 365, 541
BseXI	GCAGC	2 cut(s)	97, 629
Bsh1236I	CGCG	2 cut(s)	129, 458
BshFI	GGCC	4 cut(s)	12, 390, 748, 831
BshNI	GGYRCC	2 cut(s)	362, 695
BsiHKAI	GWGCWC	1 cut(s)	343
BsiSI	CCGG	2 cut(s)	359, 444
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	2 cut(s)	129, 300
BsmBI	CGTCTC	1 cut(s)	129
BsmI	GAATGC	1 cut(s)	113
BsnI	GGCC	4 cut(s)	12, 390, 748, 831
Bso31I	GGTCTC	1 cut(s)	300
Bsp1286I	GDGCHC	4 cut(s)	257, 343, 365, 541
Bsp143I	GATC	5 cut(s)	38, 301, 732, 762, 841
BspACI	CCGC	6 cut(s)	78, 129, 218, 456, 541, 553
BspANI	GGCC	4 cut(s)	12, 390, 748, 831
BspFNI	CGCG	2 cut(s)	129, 458
BspHI	TCATGA	3 cut(s)	150, 298, 844
BspLI	GGNNCC	2 cut(s)	364, 697
BspPI	GGATC	1 cut(s)	727
BspT107I	GGYRCC	2 cut(s)	362, 695
BspTNI	GGTCTC	1 cut(s)	300
BsrBI	CCGCTC	1 cut(s)	220
BsrFI	RCCGGY	1 cut(s)	443
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	2 cut(s)	781, 811
BssMI	GATC	5 cut(s)	38, 301, 732, 762, 841
BssNI	GRCGYC	1 cut(s)	723
Bst2UI	CCWGG	4 cut(s)	25, 186, 693, 813
Bst4CI	ACNGT	4 cut(s)	284, 433, 527, 782
Bst6I	CTCTTC	1 cut(s)	497
BstACI	GRCGYC	1 cut(s)	723
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstC8I	GCNNGC	3 cut(s)	541, 557, 829
BstDEI	CTNAG	1 cut(s)	352
BstDSI	CCRYGG	1 cut(s)	781
BstF5I	GGATG	2 cut(s)	313, 546
BstFNI	CGCG	2 cut(s)	129, 458
BstHHI	GCGC	1 cut(s)	674
BstKTI	GATC	5 cut(s)	41, 304, 735, 765, 844
BstMAI	GTCTC	2 cut(s)	129, 300
BstMBI	GATC	5 cut(s)	38, 301, 732, 762, 841
BstMWI	GCNNNNNNNGC	4 cut(s)	464, 623, 745, 754
BstNI	CCWGG	4 cut(s)	25, 186, 693, 813
BstSCI	CCNGG	5 cut(s)	23, 184, 358, 691, 811
BstSLI	GKGCMC	4 cut(s)	257, 343, 365, 541
BstUI	CGCG	2 cut(s)	129, 458
BstV1I	GCAGC	2 cut(s)	97, 629
BstX2I	RGATCY	1 cut(s)	732
BstYI	RGATCY	1 cut(s)	732
BsuI	GTATCC	1 cut(s)	249
BsuRI	GGCC	4 cut(s)	12, 390, 748, 831
BtgI	CCRYGG	1 cut(s)	781
BtgZI	GCGATG	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	313, 546
BtsIMutI	CAGTG	2 cut(s)	409, 564
Cac8I	GCNNGC	3 cut(s)	541, 557, 829
CciI	TCATGA	3 cut(s)	150, 298, 844
CfoI	GCGC	1 cut(s)	674
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	4 cut(s)	11, 215, 389, 747
CpoI	CGGWCCG	1 cut(s)	215
CseI	GACGC	1 cut(s)	712
Csp6I	GTAC	1 cut(s)	192
CspCI	CAANNNNNGTGG	2 cut(s)	763, 798
CspI	CGGWCCG	1 cut(s)	215
CviAII	CATG	5 cut(s)	151, 272, 299, 409, 845
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	1 cut(s)	352
DpnI	GATC	5 cut(s)	40, 303, 734, 764, 843
DpnII	GATC	5 cut(s)	38, 301, 732, 762, 841
EaeI	YGGCCR	1 cut(s)	829
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
Eco31I	GGTCTC	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	11
EcoRII	CCWGG	4 cut(s)	23, 184, 691, 811
Esp3I	CGTCTC	1 cut(s)	129
FaeI	CATG	5 cut(s)	154, 275, 302, 412, 848
FatI	CATG	5 cut(s)	150, 271, 298, 408, 844
FauI	CCCGC	1 cut(s)	548
Fnu4HI	GCNGC	3 cut(s)	111, 456, 618
FokI	GGATG	2 cut(s)	320, 533
Fsp4HI	GCNGC	3 cut(s)	111, 456, 618
FspBI	CTAG	2 cut(s)	29, 807
FspI	TGCGCA	1 cut(s)	673
GlaI	GCGC	1 cut(s)	673
GluI	GCNGC	3 cut(s)	111, 456, 618
GsuI	CTGGAG	1 cut(s)	7
HaeIII	GGCC	4 cut(s)	12, 390, 748, 831
HapII	CCGG	2 cut(s)	359, 444
HgaI	GACGC	1 cut(s)	712
HhaI	GCGC	1 cut(s)	674
Hin1I	GRCGYC	1 cut(s)	723
Hin1II	CATG	5 cut(s)	154, 275, 302, 412, 848
Hin6I	GCGC	1 cut(s)	672
HinP1I	GCGC	1 cut(s)	672
HindIII	AAGCTT	1 cut(s)	483
HinfI	GANTC	3 cut(s)	331, 609, 665
HpaII	CCGG	2 cut(s)	359, 444
Hpy166II	GTNNAC	3 cut(s)	341, 785, 796
Hpy188III	TCNNGA	5 cut(s)	151, 299, 305, 727, 845
Hpy8I	GTNNAC	3 cut(s)	341, 785, 796
HpyAV	CCTTC	2 cut(s)	24, 427
HpyCH4III	ACNGT	4 cut(s)	284, 433, 527, 782
HpyCH4IV	ACGT	1 cut(s)	792
HpyCH4V	TGCA	5 cut(s)	113, 266, 341, 602, 757
HpyF10VI	GCNNNNNNNGC	4 cut(s)	464, 623, 745, 754
HpyF3I	CTNAG	1 cut(s)	352
HpySE526I	ACGT	1 cut(s)	792
Hsp92I	GRCGYC	1 cut(s)	723
Hsp92II	CATG	5 cut(s)	154, 275, 302, 412, 848
HspAI	GCGC	1 cut(s)	672
Kzo9I	GATC	5 cut(s)	38, 301, 732, 762, 841
LmnI	GCTCC	2 cut(s)	187, 694
Lsp1109I	GCAGC	2 cut(s)	97, 629
LweI	GCATC	3 cut(s)	97, 442, 814
MaeI	CTAG	2 cut(s)	29, 807
MaeII	ACGT	1 cut(s)	792
MaeIII	GTNAC	1 cut(s)	833
MalI	GATC	5 cut(s)	40, 303, 734, 764, 843
MbiI	CCGCTC	1 cut(s)	220
MboI	GATC	5 cut(s)	38, 301, 732, 762, 841
MboII	GAAGA	5 cut(s)	166, 313, 412, 484, 742
MfeI	CAATTG	1 cut(s)	742
MflI	RGATCY	1 cut(s)	732
MhlI	GDGCHC	4 cut(s)	257, 343, 365, 541
MluCI	AATT	2 cut(s)	381, 742
MnlI	CCTC	7 cut(s)	457, 500, 554, 607, 637, 760, 780
MseI	TTAA	2 cut(s)	348, 384
MspI	CCGG	2 cut(s)	359, 444
MspR9I	CCNGG	5 cut(s)	25, 186, 360, 693, 813
MunI	CAATTG	1 cut(s)	742
Mva1269I	GAATGC	1 cut(s)	113
MvaI	CCWGG	4 cut(s)	25, 186, 693, 813
MvnI	CGCG	2 cut(s)	129, 458
MwoI	GCNNNNNNNGC	4 cut(s)	464, 623, 745, 754
NciI	CCSGG	1 cut(s)	360
NdeII	GATC	5 cut(s)	38, 301, 732, 762, 841
NlaIII	CATG	5 cut(s)	154, 275, 302, 412, 848
NlaIV	GGNNCC	2 cut(s)	364, 697
NsbI	TGCGCA	1 cut(s)	673
PagI	TCATGA	3 cut(s)	150, 298, 844
PcsI	WCGNNNNNNNCGW	1 cut(s)	778
PctI	GAATGC	1 cut(s)	113
PfeI	GAWTC	3 cut(s)	331, 609, 665
PflMI	CCANNNNNTGG	1 cut(s)	66
PkrI	GCNGC	3 cut(s)	112, 457, 619
PsiI	TTATAA	1 cut(s)	518
Psp6I	CCWGG	4 cut(s)	23, 184, 691, 811
PspGI	CCWGG	4 cut(s)	23, 184, 691, 811
PspN4I	GGNNCC	2 cut(s)	364, 697
PspPI	GGNCC	4 cut(s)	11, 215, 389, 747
PsuI	RGATCY	1 cut(s)	732
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
Rsr2I	CGGWCCG	1 cut(s)	215
RsrII	CGGWCCG	1 cut(s)	215
SaqAI	TTAA	2 cut(s)	348, 384
SatI	GCNGC	3 cut(s)	111, 456, 618
Sau3AI	GATC	5 cut(s)	38, 301, 732, 762, 841
Sau96I	GGNCC	4 cut(s)	11, 215, 389, 747
ScrFI	CCNGG	5 cut(s)	25, 186, 360, 693, 813
SduI	GDGCHC	4 cut(s)	257, 343, 365, 541
SetI	ASST	6 cut(s)	101, 487, 492, 561, 654, 795
SfaNI	GCATC	3 cut(s)	97, 442, 814
SinI	GGWCC	1 cut(s)	215
Sse9I	AATT	2 cut(s)	381, 742
SsiI	CCGC	6 cut(s)	78, 129, 218, 456, 541, 553
SspMI	CTAG	2 cut(s)	29, 807
StyD4I	CCNGG	5 cut(s)	23, 184, 358, 691, 811
TaaI	ACNGT	4 cut(s)	284, 433, 527, 782
TaiI	ACGT	1 cut(s)	795
TaqI	TCGA	2 cut(s)	428, 612
TasI	AATT	2 cut(s)	381, 742
TatI	WGTACW	1 cut(s)	191
TauI	GCSGC	1 cut(s)	458
TfiI	GAWTC	3 cut(s)	331, 609, 665
Tru1I	TTAA	2 cut(s)	348, 384
Tru9I	TTAA	2 cut(s)	348, 384
TscAI	CASTG	2 cut(s)	409, 571
TseI	GCWGC	2 cut(s)	110, 617
TspDTI	ATGAA	6 cut(s)	108, 139, 150, 167, 324, 495
TspGWI	ACGGA	2 cut(s)	107, 228
TspRI	CASTG	2 cut(s)	409, 571
Van91I	CCANNNNNTGG	1 cut(s)	66
VneI	GTGCAC	1 cut(s)	339
VpaK11BI	GGWCC	1 cut(s)	215
XspI	CTAG	2 cut(s)	29, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.