Rh5DG536900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003284
Physical Location & Seq
Reverse (-)
82803165 .. 82803668
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG536900.1

Sequence Viewer

Length: 504 bp
ATGCATGGGAACTTCAATCCACAATCGCATCCATCAAGGTTGCTCTACATTCAGAGGCCAGCATTTGACTACAAGGATGAAGAAGGTGAGAGCCGGCCTCTAACCATTGTCATTTGGCGACCGGTACCCCCTGCAGTCTCCGATCCAGAGAAACGATCAGCTGACAACTCTGACACCACCACCGATTGGTATGCCGGCGATGTGGCTGACTGTGAGAGCTACATAGATGCTGGATTCCGTTCGTCACGTATCGATCAAGCCTATCTATTCATAAACGACGAGTATGTGCTAGTGGACTATGCTCCGGGCAGCACAAACGACGAGGTATTGAACGGACCGCTTCTTATCTGCGATGGGTATCCATCCCTCAGGGGCACAGCCTTTGCAGAACATGGAATAGACTCTGCTTTTGGGACTTCATATCATGATTATAACGATGCCTTCATCTTCTCCGGGAATCTCTGCGCACTGATAGATAAACTATGCACCATACTCCACAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hemopexin

Protein Analysis

167

Amino Acids

18.68

Weight (kDa)

4.46

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 432
Acc16I TGCGCA 1 cut(s) 466
Acc65I GGTACC 1 cut(s) 124
AccB1I GGYRCC 1 cut(s) 124
AccB7I CCANNNNNTGG 1 cut(s) 186
AciI CCGC 1 cut(s) 338
AclWI GGATC 1 cut(s) 137
AfaI GTAC 1 cut(s) 126
AfiI CCNNNNNNNGG 1 cut(s) 186
AgeI ACCGGT 1 cut(s) 121
AgsI TTSAA 2 cut(s) 16, 331
AluBI AGCT 2 cut(s) 161, 219
AluI AGCT 2 cut(s) 161, 219
Alw26I GTCTC 1 cut(s) 142
AlwI GGATC 1 cut(s) 137
AoxI GGCC 2 cut(s) 56, 95
ApeKI GCWGC 1 cut(s) 309
ArsI GACNNNNNNTTYG 2 cut(s) 392, 424
AsiGI ACCGGT 1 cut(s) 121
Asp718I GGTACC 1 cut(s) 124
AspLEI GCGC 1 cut(s) 467
AspS9I GGNCC 1 cut(s) 335
AsuC2I CCSGG 2 cut(s) 306, 454
AsuHPI GGTGA 1 cut(s) 98
AvaII GGWCC 1 cut(s) 335
AxyI CCTNAGG 1 cut(s) 368
BaeGI GKGCMC 1 cut(s) 377
BanI GGYRCC 1 cut(s) 124
BbvI GCAGC 1 cut(s) 321
BccI CCATC 3 cut(s) 40, 347, 370
BcgI CGANNNNNNTGC 2 cut(s) 173, 207
BciVI GTATCC 1 cut(s) 369
BcnI CCSGG 2 cut(s) 306, 454
BcoDI GTCTC 1 cut(s) 142
BfaI CTAG 1 cut(s) 290
BfmI CTRYAG 1 cut(s) 132
BfuI GTATCC 1 cut(s) 369
BisI GCNGC 1 cut(s) 310
BlsI GCNGC 1 cut(s) 311
Bme1390I CCNGG 2 cut(s) 306, 454
Bme18I GGWCC 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 126
BmrFI CCNGG 2 cut(s) 306, 454
BmsI GCATC 3 cut(s) 37, 217, 427
BplI GAGNNNNNCTC 2 cut(s) 82, 114
BpuMI CCSGG 2 cut(s) 306, 454
Bsa29I ATCGAT 1 cut(s) 252
BsaAI YACGTR 1 cut(s) 248
BsaBI GATNNNNATC 1 cut(s) 357
BsaWI WCCGGW 1 cut(s) 121
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse118I RCCGGY 3 cut(s) 93, 121, 194
Bse21I CCTNAGG 1 cut(s) 368
Bse8I GATNNNNATC 1 cut(s) 357
BseCI ATCGAT 1 cut(s) 252
BseGI GGATG 3 cut(s) 28, 82, 362
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 382
BseSI GKGCMC 1 cut(s) 377
BseXI GCAGC 1 cut(s) 321
Bsh1285I CGRYCG 1 cut(s) 122
BshFI GGCC 2 cut(s) 58, 97
BshNI GGYRCC 1 cut(s) 124
BshTI ACCGGT 1 cut(s) 121
BshVI ATCGAT 1 cut(s) 252
BsiEI CGRYCG 1 cut(s) 122
BsiSI CCGG 5 cut(s) 94, 122, 195, 305, 453
BslFI GGGAC 1 cut(s) 427
BslI CCNNNNNNNGG 1 cut(s) 186
BsmAI GTCTC 1 cut(s) 142
BsmFI GGGAC 1 cut(s) 427
BsnI GGCC 2 cut(s) 58, 97
Bsp1286I GDGCHC 1 cut(s) 377
Bsp143I GATC 3 cut(s) 142, 155, 253
BspACI CCGC 1 cut(s) 338
BspANI GGCC 2 cut(s) 58, 97
BspCNI CTCAG 1 cut(s) 381
BspDI ATCGAT 1 cut(s) 252
BspHI TCATGA 1 cut(s) 424
BspLI GGNNCC 1 cut(s) 126
BspMAI CTGCAG 1 cut(s) 136
BspPI GGATC 1 cut(s) 137
BspT107I GGYRCC 1 cut(s) 124
BsrFI RCCGGY 3 cut(s) 93, 121, 194
BssAI RCCGGY 3 cut(s) 93, 121, 194
BssMI GATC 3 cut(s) 142, 155, 253
Bst4CI ACNGT 1 cut(s) 212
BstBAI YACGTR 1 cut(s) 248
BstC8I GCNNGC 3 cut(s) 60, 95, 196
BstDEI CTNAG 1 cut(s) 368
BstF5I GGATG 3 cut(s) 28, 82, 362
BstHHI GCGC 1 cut(s) 467
BstKTI GATC 3 cut(s) 145, 158, 256
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 3 cut(s) 142, 155, 253
BstMCI CGRYCG 1 cut(s) 122
BstSCI CCNGG 2 cut(s) 304, 452
BstSFI CTRYAG 1 cut(s) 132
BstSLI GKGCMC 1 cut(s) 377
BstV1I GCAGC 1 cut(s) 321
Bsu15I ATCGAT 1 cut(s) 252
Bsu36I CCTNAGG 1 cut(s) 368
BsuI GTATCC 1 cut(s) 369
BsuRI GGCC 2 cut(s) 58, 97
BsuTUI ATCGAT 1 cut(s) 252
BtgZI GCGATG 2 cut(s) 213, 366
BtsCI GGATG 3 cut(s) 28, 82, 362
BtsIMutI CAGTG 1 cut(s) 467
Cac8I GCNNGC 3 cut(s) 60, 95, 196
CciI TCATGA 1 cut(s) 424
CfoI GCGC 1 cut(s) 467
Cfr10I RCCGGY 3 cut(s) 93, 121, 194
Cfr13I GGNCC 1 cut(s) 335
ClaI ATCGAT 1 cut(s) 252
CpoI CGGWCCG 1 cut(s) 335
Csp6I GTAC 1 cut(s) 125
CspAI ACCGGT 1 cut(s) 121
CspI CGGWCCG 1 cut(s) 335
CviAII CATG 3 cut(s) 5, 392, 425
CviJI RGCY 8 cut(s) 58, 93, 97, 161, 206, 219, 260, 380
CviKI_1 RGCY 8 cut(s) 58, 93, 97, 161, 206, 219, 260, 380
CviQI GTAC 1 cut(s) 125
DdeI CTNAG 1 cut(s) 368
DpnI GATC 3 cut(s) 144, 157, 255
DpnII GATC 3 cut(s) 142, 155, 253
Eco47I GGWCC 1 cut(s) 335
Eco81I CCTNAGG 1 cut(s) 368
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 8, 395, 428
FaqI GGGAC 1 cut(s) 427
FatI CATG 3 cut(s) 4, 391, 424
Fnu4HI GCNGC 1 cut(s) 310
FokI GGATG 3 cut(s) 15, 89, 349
Fsp4HI GCNGC 1 cut(s) 310
FspBI CTAG 1 cut(s) 290
FspI TGCGCA 1 cut(s) 466
GlaI GCGC 1 cut(s) 466
GluI GCNGC 1 cut(s) 310
HaeIII GGCC 2 cut(s) 58, 97
HapII CCGG 5 cut(s) 94, 122, 195, 305, 453
HhaI GCGC 1 cut(s) 467
Hin1II CATG 3 cut(s) 8, 395, 428
Hin6I GCGC 1 cut(s) 465
HinP1I GCGC 1 cut(s) 465
HinfI GANTC 3 cut(s) 234, 401, 457
HpaII CCGG 5 cut(s) 94, 122, 195, 305, 453
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 3 cut(s) 54, 142, 172
Hpy188III TCNNGA 2 cut(s) 146, 425
Hpy8I GTNNAC 1 cut(s) 295
Hpy99I CGWCG 2 cut(s) 281, 323
HpyAV CCTTC 2 cut(s) 77, 451
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4IV ACGT 1 cut(s) 247
HpyCH4V TGCA 4 cut(s) 4, 134, 386, 486
HpyF3I CTNAG 1 cut(s) 368
HpySE526I ACGT 1 cut(s) 247
Hsp92II CATG 3 cut(s) 8, 395, 428
HspAI GCGC 1 cut(s) 465
KpnI GGTACC 1 cut(s) 128
KroI GCCGGC 2 cut(s) 93, 194
KroNI GCCGGC 2 cut(s) 95, 196
Kzo9I GATC 3 cut(s) 142, 155, 253
LmnI GCTCC 1 cut(s) 307
Lsp1109I GCAGC 1 cut(s) 321
LweI GCATC 3 cut(s) 37, 217, 427
MaeI CTAG 1 cut(s) 290
MaeII ACGT 1 cut(s) 247
MaeIII GTNAC 1 cut(s) 243
MalI GATC 3 cut(s) 144, 157, 255
MboI GATC 3 cut(s) 142, 155, 253
MboII GAAGA 2 cut(s) 92, 439
MhlI GDGCHC 1 cut(s) 377
MlyI GAGTC 1 cut(s) 395
MnlI CCTC 4 cut(s) 48, 108, 316, 377
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 2 cut(s) 93, 194
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 5 cut(s) 94, 122, 195, 305, 453
MspR9I CCNGG 2 cut(s) 306, 454
NaeI GCCGGC 2 cut(s) 95, 196
NciI CCSGG 2 cut(s) 306, 454
NdeII GATC 3 cut(s) 142, 155, 253
NgoMIV GCCGGC 2 cut(s) 93, 194
NlaIII CATG 3 cut(s) 8, 395, 428
NlaIV GGNNCC 1 cut(s) 126
NmuCI GTSAC 1 cut(s) 243
NsbI TGCGCA 1 cut(s) 466
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 424
PdiI GCCGGC 2 cut(s) 95, 196
PfeI GAWTC 2 cut(s) 234, 457
PflMI CCANNNNNTGG 1 cut(s) 186
PfoI TCCNGGA 1 cut(s) 452
PinAI ACCGGT 1 cut(s) 121
PkrI GCNGC 1 cut(s) 311
PleI GAGTC 1 cut(s) 395
PpsI GAGTC 1 cut(s) 395
Ppu21I YACGTR 1 cut(s) 248
PsiI TTATAA 1 cut(s) 432
PspN4I GGNNCC 1 cut(s) 126
PspPI GGNCC 1 cut(s) 335
PstI CTGCAG 1 cut(s) 136
PvuII CAGCTG 1 cut(s) 161
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
Rsr2I CGGWCCG 1 cut(s) 335
RsrII CGGWCCG 1 cut(s) 335
SatI GCNGC 1 cut(s) 310
Sau3AI GATC 3 cut(s) 142, 155, 253
Sau96I GGNCC 1 cut(s) 335
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 2 cut(s) 306, 454
SduI GDGCHC 1 cut(s) 377
SetI ASST 6 cut(s) 41, 88, 163, 221, 250, 327
SfaNI GCATC 3 cut(s) 37, 217, 427
SfcI CTRYAG 1 cut(s) 132
SinI GGWCC 1 cut(s) 335
SsiI CCGC 1 cut(s) 338
SspMI CTAG 1 cut(s) 290
StyD4I CCNGG 2 cut(s) 304, 452
TaaI ACNGT 1 cut(s) 212
TaiI ACGT 1 cut(s) 250
TaqI TCGA 1 cut(s) 252
TfiI GAWTC 2 cut(s) 234, 457
TscAI CASTG 1 cut(s) 474
TseFI GTSAC 1 cut(s) 243
TseI GCWGC 1 cut(s) 309
Tsp45I GTSAC 1 cut(s) 243
TspDTI ATGAA 4 cut(s) 93, 259, 408, 433
TspGWI ACGGA 2 cut(s) 227, 348
TspRI CASTG 1 cut(s) 474
Van91I CCANNNNNTGG 1 cut(s) 186
VpaK11BI GGWCC 1 cut(s) 335
XspI CTAG 1 cut(s) 290
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.